BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02640.1
Length=2584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470222 jgi|Araly1|470222|fgenesh2_kg.1__176__AT1G02640.1 3838 0.0
Ahg927211 jgi|Araly1|927211|scaffold_202772.1 78.7 2e-13
> Ahg470222 jgi|Araly1|470222|fgenesh2_kg.1__176__AT1G02640.1
Length=2345
Score = 3838 bits (2078), Expect = 0.0
Identities = 2243/2325 (96%), Gaps = 2/2325 (0%)
Strand=Plus/Plus
Query 83 AAAGAAATGATTCTCCACAAAATGGCGTTCTTGGCCGTTATTCTCTTCTTCTTGATAAGC 142
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AAAGAAATGATTCTCCACAAAATGGCGTTCTTGGCCGCTATTCTCTTCTTCTTGATAAGC 60
Query 143 AGCAGCAGCGTTTGCGTTCATAGCCGTGAAACGTTTGCTTGCGATACAAAGGACGCAGCA 202
|||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||
Sbjct 61 AGCAGCAGCGTTTGCGTTCAGAGCCGCGAAACGTTTGCTTGCGATATAAAGGACGCAGCA 120
Query 203 ACAGCTACACTGAGATTCTGCCAGCTTTCAGTTCCTATACCGGAGAGAGT-CAGAGATTT 261
|||| ||||||||||||||| || || |||||||| |||||||||||||| || |||||
Sbjct 121 ACAGATACACTGAGATTCTGTCAACTATCAGTTCCGATACCGGAGAGAGTGAAG-GATTT 179
Query 262 GATCGGACGGTTGACATTGGCCGAGAAAGTGAGCTTGTTAGGGAACACTGCGGCGGCGAT 321
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATCGGACGGTTGACATTGGTCGAGAAAGTGAGCTTGTTAGGGAACACTGCGGCGGCGAT 239
Query 322 ACCACGTCTAGGAATCAAAGGGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTTTCAAA 381
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACCACGGCTAGGAATCAAAGGGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTTTCAAA 299
Query 382 TGTGGGACCCGGTACTAAGTTCGGTGGGGTTTACCCTGCAGCCACCAGTTTCCCTCAAGT 441
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTAGGTCCCGGTACTAAGTTCGGTGGGGTTTACCCTGCAGCCACCAGTTTCCCTCAAGT 359
Query 442 CATCACCACCGTTGCTTCTTTCAATGCCTCCTTGTGGGAATCCATCGGACGGGTTGTGTC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CATCACCACCGTTGCTTCTTTCAATGCCTCCTTGTGGGAATCCATCGGACGGGTTGTATC 419
Query 502 AAATGAGGCCAGGGCCATGTACAACGGTGGAGTTGGTGGGCTTACGTATTGGAGCCCAAA 561
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 420 AAATGAGGCCAGAGCCATGTACAACGGTGGTGTTGGTGGGCTTACTTATTGGAGCCCAAA 479
Query 562 CGTTAACATATTGAGGGACCCACGTTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCC 621
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGTTAACATATTGCGGGACCCACGTTGGGGACGTGGACAGGAAACTCCCGGTGAAGATCC 539
Query 622 AGTAGTAGCCGGTAAATACGCAGCGAGCTACGTCAGAGGGTTACAGGGAAACGACCGTAG 681
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGTCGTAGCCGGTAAATACGCAGCGAGCTACGTCAGAGGTTTACAGGGAAACGACCGTAG 599
Query 682 CCGGTTAAAAGTAGCTGCTTGTTGCAAACATTTCACAGCTTACGATCTCGATAACTGGAA 741
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 600 CCGGTTAAAAGTAGCTGGTTGTTGCAAACATTTCACAGCTTACGATCTTGATAATTGGAA 659
Query 742 CGGCGTCGACAGATTCCATTTCAACGCTAAGGTAAGCAAGCAAGACATAGAAGACACGTT 801
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CGGCGTCGATAGATTCCATTTCAACGCTAAGGTAAGCAAGCAAGACATAGAGGACACGTT 719
Query 802 CGACGTACCGTTCCGTATGTGTGTTAAAGAAGGTAACGTTGCGAGCATTATGTGTTCGTA 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGACGTACCGTTCCGTATGTGTGTTAAAGAAGGTAACGTTGCGAGCATTATGTGTTCGTA 779
Query 862 CAATCAAGTTAATGGTGTTCCTACATGTGCTGATCCTAATCTCCTCAAGAAGACCATACG 921
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CAATGAAGTTAATGGTGTTCCCACATGTGCTGATCCTAATCTCCTAAAGAAGACCATACG 839
Query 922 CAATCAATGGGGTCTCAACGGGTATATCGTGTCTGATTGTGACTCTGTCGGTGTTTTGTA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 CAATCAATGGGGTCTCAACGGGTATATCGTGTCTGATTGTGACTCTGTCGGTGTTTTATA 899
Query 982 CGATACCCAACATTACACTGGTACTCCTGAAGAAGCTGCCGCTGATTCCATCAAAGCTGG 1041
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 CGATACGCAACATTACACTGGTACTCCTGAAGAAGCTGCTGCTGATTCCATCAAAGCTGG 959
Query 1042 CTTGGATTTAGATTGTGGGCCATTTCTAGGAGCCCATACAATCGATGCGGTGAAGAAAAA 1101
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 960 CTTGGATTTAGATTGTGGGCCGTTTCTTGGAGCCCATACAATTGATGCGGTGAAGAAAAA 1019
Query 1102 CTTGTTGCGTGAGTCCGATGTTGATAATGCCTTAATCAACACGCTAACAGTCCAAATGAG 1161
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTGTTGCGTGAGTCTGACGTTGACAATGCCTTAATCAACACGCTAACAGTCCAAATGAG 1079
Query 1162 ACTAGGAATGTTTGATGGCGATATAGCGGCTCAACCGTACGGACACCTTGGACCGGCACA 1221
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACTGGGAATGTTTGATGGCGATATAGCGGCTCAACCGTACGGACACCTTGGACCGGCACA 1139
Query 1222 CGTGTGTACACCGGTTCACAAAGGACTAGCTCTCGAAGCAGCTCAACAAGGAATCGTCCT 1281
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 CGTGTGTACACCGGTTCACAAAGGACTAGCTCTCGAAGCAGCTCATCAAGGAATCGTCCT 1199
Query 1282 ACTCAAAAATCACGGCTCGTCTCTACCTCTCTCAAGCCAACGTCACCGAACTGTCGCCGT 1341
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ACTCAAGAATCACGGCTCGTCTCTACCTCTCTCAAGCCAACGTCACCGAACTGTCGCCGT 1259
Query 1342 AATTGGACCTAATTCAGACGCTACGGTCACAATGATTGGTAATTATGCAGGGGTTGCTTG 1401
||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1260 AATTGGACCTAATTCTGACGCTACAGTCGCAATGATTGGTAATTATGCAGGAATTGCTTG 1319
Query 1402 TGGATATACCAGTCCGGTTCAAGGTATTACCGGTTATGCTCGAACCATTCATCAAAAGGG 1461
|||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||
Sbjct 1320 TGGATATACCAGTCCGGTTCAAGGAATTACCGGTTATGCACGAACGGTTCACCAAAAGGG 1379
Query 1462 TTGCGTGGACGTACACTGCATGGATGATAGATTGTTCGATGCCGCGGTTGAAGCGGCTCG 1521
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1380 TTGCGTGGACGTACACTGCATGGACGATAGATTGTTCGATGCCGCGGTTGAAGCTGCTCG 1439
Query 1522 TGGAGCTGATGCGACGGTTCTTGTGATGGGTTTGGATCAGTCTATTGAAGCGGAGTTCAA 1581
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1440 TGGAGCTGATGCGACAGTTCTTGTGATGGGTTTGGATCAGTCTATTGAAGCTGAGTTTAA 1499
Query 1582 GGACAGAAACAGTTTGCTTTTGCCTGGGAAACAACAAGAGCTTGTCTCTAGAGTTGCTAA 1641
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1500 GGACAGAAACAGTTTGCTTTTGCCTGGGAAACAACAAGAGCTTATCTCTAGAGTTGCTAA 1559
Query 1642 GGCCGCTAAAGGCCCAGTTATCTTAGTATTGATGTCTGGTGGGCCTATCGATATATCTTT 1701
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGCCTCTAAAGGCCCAGTTATATTAGTATTGATGTCTGGTGGGCCTATCGATATATCTTT 1619
Query 1702 TGCTGAGAAGGATCGGAAAATTCCAGCGATTGTTTGGGCCGGGTATCCGGGTCAAGAAGG 1761
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1620 TGCTGAGAAGGATCGGAAAATTCCAGCAATTGTTTGGGCCGGGTATCCGGGTCAAGAAGG 1679
Query 1762 TGGTACCGCAATCGCCGATATCTTATTCGGCAGTGCTAATCCCGGAGGAAAGCTTCCGAT 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGGTACCGCAATCGCCGATATCTTATTCGGCAGTGCTAATCCCGGAGGAAAGCTTCCGAT 1739
Query 1822 GACTTGGTATCCGCAAGATTATTTAACCAATTTACCAATGACAGAAATGTCGATGCGGCC 1881
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1740 GACTTGGTATCCGCAAGATTATTTAACCAATTTACCAATGACCGAAATGTCGATGCGACC 1799
Query 1882 GGTCCATTCGAAGCGGATCCCGGGTCGGACTTACCGGTTCTACGACGGTCCAGTTGTTTA 1941
| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1800 GATCCATTCGAAGCGGATTCCGGGTCGGACTTACCGGTTCTACGACGGTCCGGTTGTTTA 1859
Query 1942 CCCGTTCGGGCATGGTTTGAGTTACACGCGCTTTACTCACAACATAGCCGACGCGCCAAA 2001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1860 CCCGTTCGGGCATGGTTTGAGTTACACGCGCTTTACTCACAGCATAGCCGACGCGCCAAA 1919
Query 2002 AGTGATTCCTATAGCTGTTCGTGGAAGAAACGGCACCGTTTCAGGGAAATCAATCCGTGT 2061
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1920 AGTGATTCCTATAGCTGTTCGTGGTAGAAACGGCACCGTTTCAGGGAAATCAATCCGTGT 1979
Query 2062 GACGCACGCTAGGTGTGATCGTCTCTCTCTCGGAGTCCACGTGGAAGTTACTAACGTTGG 2121
||||||||||||||| ||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 1980 CACGCACGCTAGGTGTAATCGTCTTTCTCTCGGTGTCCATGTGGATGTTACTAACGTTGG 2039
Query 2122 CTCGAGAGATGGGACGCACACAATGCTTGTGTTCTCGGCTCCGCCGGGTGGAGAATGGGC 2181
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2040 CTCAAGAGATGGGACTCACACAATGCTTGTGTTCTCGGCTCCGCCGGGTGGAGAGTGGGC 2099
Query 2182 TCCGAAGAAACAGCTGGTTGCTTTTGAGAGAGTACACGTGGCGGTTGGGGAGAAGAAGCG 2241
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2100 TCCGAAGAAACAGCTAGTTGCTTTCGAGAGAGTACACGTGGCGGTTGGAGAGAAGAAGCG 2159
Query 2242 TGTGCAGGTGAATATACACGTGTGTAAGTATTTAAGTGTAGTGGACCGAGCCGGGAACCG 2301
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 TGTACAGGTGAATATACACGTGTGTAAGTATTTAAGTGTAGTGGACCGAGCCGGGAACCG 2219
Query 2302 AAGGATTCCGATCGGTGATCATGGGATTCATATTGGAGATGAGAGTCATACGGTGTCGCT 2361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 AAGGATTCCGATCGGTGATCATGGGATTCATATTGGAGATGAGAGTCATACGGTGTCGCT 2279
Query 2362 TCAAGCTTCTACTCTTGGAGTCATCAAGTCTTGACTCTGtttttt 2406
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 TCAAGCTTCTACTCTTGGAGTCATCAAGTCTTGACTCTGTTTTTT 2324
> Ahg927211 jgi|Araly1|927211|scaffold_202772.1
Length=2341
Score = 78.7 bits (42), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 298 GTTAGGGAACACTGCGGCGGCGATACCACGTCTAGGA-ATCAAAGG-GTACGAGTGGTGG 355
||| |||||||| || ||| |||||||||||| ||| || || |||||||||||||
Sbjct 209 GTTGGGGAACACAGCTCCGGGGATACCACGTCTTGGAGTTC--CGGCGTACGAGTGGTGG 266
Query 356 TCGGAGGCTTTACACGGCGT 375
||||||||||||||||||||
Sbjct 267 TCGGAGGCTTTACACGGCGT 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97434846710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5