BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02650.1 Length=1542 Score E Sequences producing significant alignments: (Bits) Value Ahg470223 jgi|Araly1|470223|fgenesh2_kg.1__177__AT1G02650.1 2366 0.0 > Ahg470223 jgi|Araly1|470223|fgenesh2_kg.1__177__AT1G02650.1 Length=1524 Score = 2366 bits (1281), Expect = 0.0 Identities = 1459/1543 (95%), Gaps = 20/1543 (1%) Strand=Plus/Plus Query 1 ATGGCGATTCATCCTTGGTGGAAACGTAACAGAAAGAAAGTGGACAAGTACATGAAGAAT 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGATTCATCCTTGGTGGAAACGTAACAGAAAGAAAGTGGACAAGTACATGAAGAAC 60 Query 61 GCGAAGGATTTGATAACCAGCCAAGATCCAAACGACATCGTATCAGCTCTCAGTCTCTTG 120 ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 61 GCGAAGGATTTGATAACGAGCCAAGATCCAAACGACATCGTATCAGCTCTAAGCCTCTTG 120 Query 121 AATTCAACGCTTTCTATCTCTCCTCACCACGAACTCGCTCTGGAACTCAAAGCCAGATCG 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATTCAACGCTTTCCATCTCTCCTCACCACGAACTCGCTCTGGAACTCAAAGCCAGATCG 180 Query 181 CTTCTCTACCTTCGTCGTTTCAAAGACGTGGCCGTTTTGCTTCACAATTACATTCCCAGT 240 ||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||| Sbjct 181 CTTCTCTACCTTCGTCGTTTCGAAGACGTCGCCGTTTTGCTTCACGATTACATTCCCAGT 240 Query 241 CTTAGAATCGATAACGAAGATGTCAGCAGTGTCTTCGCCGCTTCATCGGAGCTTTCCTCT 300 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 241 CTTAGAATCGATAACGAAGATGTCAGCAGTGTCGTCGTCGCTTCATCGGAGCTTTCCTCT 300 Query 301 CTCATGCTTCTTCTTCCGAGTGGCTCACCGAGTCATGACTCGTCGTTCAAGTGTTTCTCT 360 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTCAGGCCTCTTCTTCCGAGTGGCTCACCGAGTCATGACTCGTCGTTCAAGTGTTTCTCT 360 Query 361 TATTCCTACTTGAAGAAGAAGGTCATGGCAGGGTTAAGTAATAATTCTCAAGTACAAGGG 420 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 361 TATTCCTACTTGAAGAAGAAGGTCATGGCAGGGTTAAGTAATAATTCTGAAGTACAAGGG 420 Query 421 CAATGGAGATACTTGGTTTTGGGCCAAGCTTGTTACCATCTGGGTTTAATGGATGACGCG 480 ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||| Sbjct 421 CAATGGAGATACTTGGTTTTGGGTCAAGCTTGTTACCATCTAGGTCTAATGGAAGACGCG 480 Query 481 ATCATCCTACTCCAAACCGGTAAACGCCTAGCCACGGCGGAGCTCCGCCGCGAAAGCATT 540 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 481 ATGATCCTACTCCAAACCGGTAAACGCCTTGCCACGGCGGAGCTCCGCCGCGAAAGCATT 540 Query 541 TGCTGGTCCGAAGATAGCTTCAACCTTTCCACCTCCGAATCTCAGCCACAACCAATCACC 600 ||||||||||| |||||||||| ||||| |||||||||||||||||||| |||| ||||| Sbjct 541 TGCTGGTCCGACGATAGCTTCATCCTTTTCACCTCCGAATCTCAGCCACGACCATTCACC 600 Query 601 GAATCCGAGATCGTATCGCAAATGCTCTCCCAAACCAAGCTCTTCCTCCGACGGCGCACA 660 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 601 GAATCCGAGATCGTATCGCAAATGCTCTCCCAAATCAAGCTCTTCCTCCGACGGCGCACG 660 Query 661 GCGGCGCTCGCAGCACTTGACGCCGGTCTCTACTCCGAATCCATCCGCCATTTCTCTAAG 720 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 661 GCGGCGCTCGCAGCACTCGACGCCGGTCTCTACTCTGAATCCATCCGCCATTTCTCTAAG 720 Query 721 ATCATAGACAGCCGTCGTGGTGCACCGCAGAGTTTCCTCGTCTATTGCTTAATTCGTCGC 780 ||||||||||||||||| |||||||||||| |||||||||| |||||||||| ||||| Sbjct 721 ATCATAGACAGCCGTCGCAGTGCACCGCAGAATTTCCTCGTCGATTGCTTAATCCGTCGT 780 Query 781 GCCTTCGCCTATAAATCCGCCGGCCGAATCGCGGATTCCATCGCCGATTGCAACTTAATC 840 |||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 781 GCCTCCGCCTACAAATCCGCCAGCCGAATCGCGGATTCCATCGCCGATTGCAACTTAACC 840 Query 841 CTAGCCCTAGAACCGTCGTGCATAGAAGCTTTAGAAACCAGAGCTGAATTGTTCCGATCG 900 |||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 841 CTAGCCTTAGATCCGTCGTGCCTAGAAGCTTTAGAAACCAGAGCCGAATTGTTCCGATCG 900 Query 901 ATACGGTGTTTCCCCGACTCGCTTCACGATCTCGAACACTTGAAACTCCTCTTCAATTCA 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ATACGGTGTTTCCCCGACTCGCTTCACGATCTCGAACACTTGAAACTCCTCTTCAATTCA 960 Query 961 ATTTTACGTGACCGGTCATTAACCGGCCCGGTTTGGAAACGGCATAATGTCCGGTACAGA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 ATTTTACGTGACCGGTCATTAACCGGCCCGGTTTGGAAACGGCATAATGTCCGGTACAGA 1020 Query 1021 GAAATCCCGGGAAAATTATGTGTATTGACCACTAATATCAAACAAATGAAGGAGAAAATT 1080 |||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 1021 GAAATCCCGGCAAAATTATGTGAATTAACCTCTAATATCAAACAAATGAAGGAGAAAATT 1080 Query 1081 ACAAACAGAGAAAACGGCAATGAGGATTATTACTCATTGATGGGAATTGAACGTGGGTGC 1140 |||||| || ||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1081 ACAAACGGAAAAAACGGTAATGAGGATTATTACTCTTTGATGGGAATTGAACGTGGGTGC 1140 Query 1141 TCGAGATCGGAGCTGAACAGGGCTTACTTGTTACTGAATCTAAGATATAAATCGGAGAGA 1200 |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| Sbjct 1141 TCGAGATCGGAGCTGAACCGGGCGTACTTGTTACTGAATCTAAGACATAAATCGGAGAGA 1200 Query 1201 TCAATGACGTCTATAGACCGGTTCGATATAATCGATGAGCAAGAATTAGTTTCGGTTAAG 1260 ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 1201 TCAATGACGTCTATAGACCGGTTCGATATAATCGATGAGGAAGAATTAGCTTCGGTTAAA 1260 Query 1261 AACCGAGCGAGAATGTCAACGTTGTTACTCTATAGATTGATCCAGAAGGGATATTACGCC 1320 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 AACCGAGCTAGAATGTCAACGTTGTTACTCTATAGATTGATCCAGAAGGGATATTACGCC 1320 Query 1321 GTATTGAGTGACATTGAAACCGTAGAAGCGG-ACAAAGCGGTTGCAATCGATAATCGACG 1379 ||| |||||||||||||||| |||||||||| | ||||||||| | ||||||||||||| Sbjct 1321 GTAATGAGTGACATTGAAACGGTAGAAGCGGTA-AAAGCGGTT--A-TCGATAATCGACG 1376 Query 1380 GATTGAAACGCCGATGGATGGTAATAAAGCGGTGGCAATGACGGTTGTGAGGAAGAGTAA 1439 |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| Sbjct 1377 GATTGAAACGCCGATGGATGGTAACAAAGCGGTGGCAGTGGCGGTTGTGAGGAAGAGTAA 1436 Query 1440 CGACAAGTTAGATGTGGTGGTTAAAGGAGTGTTTTGTAGAGATATGGCGGCGGTTGGGAG 1499 || | | || | ||||||||||||||||||||||||| ||||||||||| Sbjct 1437 CG-----T--G--GT--T----AAAGGAGTGTTTTGTAGAGATATGGTGGCGGTTGGGAC 1481 Query 1500 TTTGATTTCCCGTGCCGGTTTAAGACAACCAATTACGGTTTAG 1542 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1482 TTTGATTTCCCGTGCCGGTTTAAGACAACCAATTACGGTTTAG 1524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57744811420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5