BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02660.1
Length=2609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918918 jgi|Araly1|918918|scaffold_100199.1 3293 0.0
> Ahg918918 jgi|Araly1|918918|scaffold_100199.1
Length=2190
Score = 3293 bits (1783), Expect = 0.0
Identities = 2062/2193 (94%), Gaps = 34/2193 (2%)
Strand=Plus/Plus
Query 227 TTTCTTTCGATGGACAGTTTGTGTTTGAATAGCGGTTTACACGGTGTAATTCCAGCGATC 286
||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 12 TTTATTACGATGGACAGTTTGTGTTTTAATAGCGGTTTACACGGTGTAATTCCAGCGATC 71
Query 287 ACTGCGGTTGGAAACGGCGGT-TGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCGTCGGC 345
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||
Sbjct 72 ACTGCGGTTGGAAACGG-TGTAAGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCAACGGC 130
Query 346 ACCATCGCAAAAAAGAGGACCTTTCGGGTTCTCATTTAAGTACCCACTGACGCCGTTTTG 405
|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 131 ACCATCGCAAAAAAGAGGACCTTTTGGCTTCTCATTTAAGTACCCATTGACGCCGTTTTG 190
Query 406 GTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGATTGTGTTTAGACGA 465
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 191 GTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGGTTGTGTTTAGACGA 250
Query 466 CGCCGTTTTGGTTGATTCCGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGA 525
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 251 CGCCGTTTTGGTTGATTCTGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGA 310
Query 526 AATGGATACGGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTAC 585
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 AATGGATACCGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTAT 370
Query 586 GTGGA-A-ACACgaagaagaagaagatgatgatgaag-t-a-ga--a-gatgaagacgga 637
||||| | | | | ||||||||||||||| ||||||| | | || | ||||| || | |
Sbjct 371 GTGGAGAGATA-G-AGAAGAAGAAGATGAAGATGAAGATGATGATGATGATGATGAAGAA 428
Query 638 gacgaagaCGAGGAGGTTGAATTAGACGACGCCGTAGTATCTGAAGATGATGGTGGATGC 697
|| ||||||||||| ||||||| ||||||||||||| || |||||||||||||||| |||
Sbjct 429 GATGAAGACGAGGATGTTGAATCAGACGACGCCGTATTAGCTGAAGATGATGGTGGTTGC 488
Query 698 GATGTATGTTCAG-TTTTGGAAGATGATGGCAACGAAGCAAACAAATTTCAACTCGATAG 756
||||||||||| | |||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 489 GATGTATGTTC-GATTTTGGAAGATGATGGTGACGAAGCAAACAAATTTCAGCTTGATAG 547
Query 757 AGAATCGTTCTCCAAATTGCTAAGGAGGGTTACGTTACCCGAATCAAAACTCTATGCCCA 816
|||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 548 AGAATCGTTCACCAAATTGCTGAGGAGGGTTACGTTACCAGAATCAAAACTCTATGCCCA 607
Query 817 ACTATCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTGTC 876
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 608 AATGTCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTTTC 667
Query 877 GAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCGGCGTTAAA 936
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 GAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCTGCGTTAAA 727
Query 937 AGCTGAGAATGGTGAAGTTTCAGGTGAGACTAAGCCAATTGTGgaagcagaagaag---a 993
||||| ||||||||| |||||||| |||||||||||||||| ||||| |||||||| |
Sbjct 728 AGCTGGGAATGGTGAGGTTTCAGGAGAGACTAAGCCAATTGAGGAAGAAGAAGAAGCTAA 787
Query 994 agttgaagaagaag-ag-a-agaa-CA-AAA-GTCGCAAGATTAGTGCTTCTGCTGCATA 1047
|| ||||||||||| || | |||| | ||| ||||||||||||||||||||||||||||
Sbjct 788 AGATGAAGAAGAAGAAGAAGAGAAGAAGAAAGGTCGCAAGATTAGTGCTTCTGCTGCATA 847
Query 1048 TGAGATTGTTGCATCAGCTGCTTCTTACCTTCACTCTCGTACCAACAACATACTTCCTTT 1107
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 848 TGAGATTGTTGCATCAGCTGCTTCTTACCTGCACTCCCGTACCAACAACATACTTCCTTT 907
Query 1108 CAACTCTTCATCGAAAGCCGAGAATTCGGACAAACATGATGTAAATTTGACTAATGCGGA 1167
||| ||||||||||||| | | |||||| |||||||||||||| | ||||||||
Sbjct 908 CAATTCTTCATCGAAAG-C------T--GACAAAAATGATGTAAATTTGGCAAATGCGGA 958
Query 1168 GTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAA 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAA 1018
Query 1228 GCAAGCAGTTGCAGACGATTTGAAATCCACGATTTCGTCTCCCTGCGATTGGTTTATATG 1287
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1019 GCAAGCTGTTGCAGACGATTTGAAATCGACGATTTCTTCTCCCTGCGATTGGTTTATATG 1078
Query 1288 TGATGATGATCAGAGTCACACTAGATTCGTTGTGATTCAGGGATCTGAATCTCTAGCTTC 1347
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 TGATGATGATCAGAGTCACACTAGATTTGTTGTGATTCAGGGATCTGAATCTCTAGCTTC 1138
Query 1348 TTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGCCTTGGTGCGATCGTACA 1407
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1139 TTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGACTTGGTGCGATCGTACA 1198
Query 1408 CAGAGGAATATACGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGC 1467
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CAGAGGAATATATGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGC 1258
Query 1468 CCATATTAAAACCCATGGGACCAGCGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGG 1527
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCATATCAAAACCCACGGGACCAACGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGG 1318
Query 1528 AAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCGTCTTC 1587
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1319 AAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCTTCTTC 1378
Query 1588 TTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGTGACCGTCTTCT 1647
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1379 TTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGCGACCGTCTTCT 1438
Query 1648 TAAGAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTATTGTTATGCACCGTGACATTGT 1707
||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1439 TAAAAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTGTCATAATGCACCGTGACATTGT 1498
Query 1708 TCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCTGAGCTTCTCAAAGCTGTTAA 1767
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1499 CCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCCGAGCTTCTCAAAGCTGTTAA 1558
Query 1768 TGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGG 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGG 1618
Query 1828 CGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCCCCCGGGCATGAACTTCTTCCTTC 1887
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
Sbjct 1619 CGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCTCCTGGACATGAACTTCTTCCTCC 1678
Query 1888 CGGAAACGGTTTATACCTTCTAACTAGT-GATTTTGAATCGCCGGATATTGAAGATTCGG 1946
||| |||||||||| |||||||| || ||||| ||||||||| ||| ||||||||| |
Sbjct 1679 CGGGGACGGTTTATATCTTCTAAC-AGGCGATTTCGAATCGCCGAATAATGAAGATTCTG 1737
Query 1947 ATGAGGAGCGGTTAAGAGCCGCGCAGACGGTTTTCTTGAACACCCCGCATCCTCTCGACA 2006
| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 1738 AGGAGGAACGGTTAAGAGCCGCGCAGACGGTTTTCTTAAACACACCGCATCCTCTTGACA 1797
Query 2007 TTCTCAGCGACAGATCGGCTTATGGGTCCAGCGGAACAATCCAAAGAGACCATGATATGA 2066
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1798 TACTCAGCGACAGATCGGCTTATGGGTCCAGTGGAACAATCCAAAGGGACCATGATATGA 1857
Query 2067 ACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAGGAAGTGAATCAGATAAGGAGAG 2126
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1858 ACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAAGAAGTGAATCAGATAAGGAGAG 1917
Query 2127 CAAAAAGGGAGCATCGCCGGAGTCTTTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAA 2186
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1918 CGAAAAGGGAGCATCGCCGGAGTCTCTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAA 1977
Query 2187 GCTCAGGGATTGCGGTCAGTAACGGCCAAATCAACGGTCAGGATTTCTCCGGGATGATGC 2246
|||| |||||||| |||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1978 GCTCGGGGATTGCAATCAGTAACGGCCAAATCAACAGTCAGGATTTCTCTGGGATGATGA 2037
Query 2247 AGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGT 2306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGT 2097
Query 2307 TGATCGTTGTTATGTTGTTTCCGGTTAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTA 2366
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2098 TGATCGTTGTTATGTTGTTTCCGGTGAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTA 2157
Query 2367 GTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTAT 2399
|||||||||||||||||||||||||||||||||
Sbjct 2158 GTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTAT 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98387102835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5