BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02660.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value Ahg918918 jgi|Araly1|918918|scaffold_100199.1 3293 0.0 > Ahg918918 jgi|Araly1|918918|scaffold_100199.1 Length=2190 Score = 3293 bits (1783), Expect = 0.0 Identities = 2062/2193 (94%), Gaps = 34/2193 (2%) Strand=Plus/Plus Query 227 TTTCTTTCGATGGACAGTTTGTGTTTGAATAGCGGTTTACACGGTGTAATTCCAGCGATC 286 ||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 12 TTTATTACGATGGACAGTTTGTGTTTTAATAGCGGTTTACACGGTGTAATTCCAGCGATC 71 Query 287 ACTGCGGTTGGAAACGGCGGT-TGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCGTCGGC 345 ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| Sbjct 72 ACTGCGGTTGGAAACGG-TGTAAGCGGTGGAGTTGTTGAAGTCCGAGCAACTGCAACGGC 130 Query 346 ACCATCGCAAAAAAGAGGACCTTTCGGGTTCTCATTTAAGTACCCACTGACGCCGTTTTG 405 |||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 131 ACCATCGCAAAAAAGAGGACCTTTTGGCTTCTCATTTAAGTACCCATTGACGCCGTTTTG 190 Query 406 GTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGATTGTGTTTAGACGA 465 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 191 GTCTCGCGGCGGTGGAGGAGGAATTGCGTCGAGGAGACGAAGTGGGTTGTGTTTAGACGA 250 Query 466 CGCCGTTTTGGTTGATTCCGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGA 525 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 251 CGCCGTTTTGGTTGATTCTGGCGATTCGAGAAAGCCGATCGCGGAGGAGACGGCGGTGGA 310 Query 526 AATGGATACGGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTAC 585 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311 AATGGATACCGAGAGGCGAAATGGGAGCTGGGTTTTGAAGATCTTGGATGTACAATCTAT 370 Query 586 GTGGA-A-ACACgaagaagaagaagatgatgatgaag-t-a-ga--a-gatgaagacgga 637 ||||| | | | | ||||||||||||||| ||||||| | | || | ||||| || | | Sbjct 371 GTGGAGAGATA-G-AGAAGAAGAAGATGAAGATGAAGATGATGATGATGATGATGAAGAA 428 Query 638 gacgaagaCGAGGAGGTTGAATTAGACGACGCCGTAGTATCTGAAGATGATGGTGGATGC 697 || ||||||||||| ||||||| ||||||||||||| || |||||||||||||||| ||| Sbjct 429 GATGAAGACGAGGATGTTGAATCAGACGACGCCGTATTAGCTGAAGATGATGGTGGTTGC 488 Query 698 GATGTATGTTCAG-TTTTGGAAGATGATGGCAACGAAGCAAACAAATTTCAACTCGATAG 756 ||||||||||| | |||||||||||||||| ||||||||||||||||||| || ||||| Sbjct 489 GATGTATGTTC-GATTTTGGAAGATGATGGTGACGAAGCAAACAAATTTCAGCTTGATAG 547 Query 757 AGAATCGTTCTCCAAATTGCTAAGGAGGGTTACGTTACCCGAATCAAAACTCTATGCCCA 816 |||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 548 AGAATCGTTCACCAAATTGCTGAGGAGGGTTACGTTACCAGAATCAAAACTCTATGCCCA 607 Query 817 ACTATCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTGTC 876 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 608 AATGTCGTATTTGGGAAACTTGGCTTATTCAATTTCAAAAATCAAGCCTGCGAATCTTTC 667 Query 877 GAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCGGCGTTAAA 936 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 668 GAAATATTACGGCCTGAGATTTGTAACTTCATCAGCTGAGAAAACAGAATCTGCGTTAAA 727 Query 937 AGCTGAGAATGGTGAAGTTTCAGGTGAGACTAAGCCAATTGTGgaagcagaagaag---a 993 ||||| ||||||||| |||||||| |||||||||||||||| ||||| |||||||| | Sbjct 728 AGCTGGGAATGGTGAGGTTTCAGGAGAGACTAAGCCAATTGAGGAAGAAGAAGAAGCTAA 787 Query 994 agttgaagaagaag-ag-a-agaa-CA-AAA-GTCGCAAGATTAGTGCTTCTGCTGCATA 1047 || ||||||||||| || | |||| | ||| |||||||||||||||||||||||||||| Sbjct 788 AGATGAAGAAGAAGAAGAAGAGAAGAAGAAAGGTCGCAAGATTAGTGCTTCTGCTGCATA 847 Query 1048 TGAGATTGTTGCATCAGCTGCTTCTTACCTTCACTCTCGTACCAACAACATACTTCCTTT 1107 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 848 TGAGATTGTTGCATCAGCTGCTTCTTACCTGCACTCCCGTACCAACAACATACTTCCTTT 907 Query 1108 CAACTCTTCATCGAAAGCCGAGAATTCGGACAAACATGATGTAAATTTGACTAATGCGGA 1167 ||| ||||||||||||| | | |||||| |||||||||||||| | |||||||| Sbjct 908 CAATTCTTCATCGAAAG-C------T--GACAAAAATGATGTAAATTTGGCAAATGCGGA 958 Query 1168 GTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAA 1227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 GTCATCATCAGATGTTGCTTATTCTGTTACTTCTGTTGTTGCTGCTGAGGAAGATGTGAA 1018 Query 1228 GCAAGCAGTTGCAGACGATTTGAAATCCACGATTTCGTCTCCCTGCGATTGGTTTATATG 1287 |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 1019 GCAAGCTGTTGCAGACGATTTGAAATCGACGATTTCTTCTCCCTGCGATTGGTTTATATG 1078 Query 1288 TGATGATGATCAGAGTCACACTAGATTCGTTGTGATTCAGGGATCTGAATCTCTAGCTTC 1347 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1079 TGATGATGATCAGAGTCACACTAGATTTGTTGTGATTCAGGGATCTGAATCTCTAGCTTC 1138 Query 1348 TTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGCCTTGGTGCGATCGTACA 1407 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1139 TTGGCAAGCAAATTTACTCTTTGAGCCTATTGAATTTGAGGGACTTGGTGCGATCGTACA 1198 Query 1408 CAGAGGAATATACGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGC 1467 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CAGAGGAATATATGAAGCTGCAAAAGGAATGTATGAACAAATGCTACCTGAAGTTAAAGC 1258 Query 1468 CCATATTAAAACCCATGGGACCAGCGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGG 1527 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1259 CCATATCAAAACCCACGGGACCAACGCTAAATTCCGTTTCACCGGTCATTCATTAGGTGG 1318 Query 1528 AAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCGTCTTC 1587 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1319 AAGCTTATCGCTATTACTAAACCTCATGTTACTCGTTCGAGGCGAAGTACCTGCTTCTTC 1378 Query 1588 TTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGTGACCGTCTTCT 1647 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1379 TTTACTTCCGGTTATAACATATGGTGCACCATTTGTGCTATGTGGAGGCGACCGTCTTCT 1438 Query 1648 TAAGAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTATTGTTATGCACCGTGACATTGT 1707 ||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 1439 TAAAAAACTCGGATTGCCTAAAAGCCATGTTCAAGCTGTCATAATGCACCGTGACATTGT 1498 Query 1708 TCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCTGAGCTTCTCAAAGCTGTTAA 1767 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1499 CCCGAGAGCTTTTTCTTGTAACTATCCGTACCATGTTGCCGAGCTTCTCAAAGCTGTTAA 1558 Query 1768 TGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGG 1827 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 TGGAAACTTCCGTAGCCATCCTTGTCTTAACAAACAGAGTATGTTGTATTCTCCGATGGG 1618 Query 1828 CGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCCCCCGGGCATGAACTTCTTCCTTC 1887 |||||||||||||||||||||||||||||||||||| || || ||||||||||||||| | Sbjct 1619 CGAGCTTCTGATTCTTCAACCAGATGAGACATTCTCTCCTGGACATGAACTTCTTCCTCC 1678 Query 1888 CGGAAACGGTTTATACCTTCTAACTAGT-GATTTTGAATCGCCGGATATTGAAGATTCGG 1946 ||| |||||||||| |||||||| || ||||| ||||||||| ||| ||||||||| | Sbjct 1679 CGGGGACGGTTTATATCTTCTAAC-AGGCGATTTCGAATCGCCGAATAATGAAGATTCTG 1737 Query 1947 ATGAGGAGCGGTTAAGAGCCGCGCAGACGGTTTTCTTGAACACCCCGCATCCTCTCGACA 2006 | ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct 1738 AGGAGGAACGGTTAAGAGCCGCGCAGACGGTTTTCTTAAACACACCGCATCCTCTTGACA 1797 Query 2007 TTCTCAGCGACAGATCGGCTTATGGGTCCAGCGGAACAATCCAAAGAGACCATGATATGA 2066 | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1798 TACTCAGCGACAGATCGGCTTATGGGTCCAGTGGAACAATCCAAAGGGACCATGATATGA 1857 Query 2067 ACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAGGAAGTGAATCAGATAAGGAGAG 2126 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1858 ACTCGTATCTGAAAGCGGTTAGGAGTGTAATAAGAAAAGAAGTGAATCAGATAAGGAGAG 1917 Query 2127 CAAAAAGGGAGCATCGCCGGAGTCTTTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAA 2186 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1918 CGAAAAGGGAGCATCGCCGGAGTCTCTGGTGGCCAATTCTGGTGGCTAGAGAAAGTGGAA 1977 Query 2187 GCTCAGGGATTGCGGTCAGTAACGGCCAAATCAACGGTCAGGATTTCTCCGGGATGATGC 2246 |||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1978 GCTCGGGGATTGCAATCAGTAACGGCCAAATCAACAGTCAGGATTTCTCTGGGATGATGA 2037 Query 2247 AGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGT 2306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2038 AGACAGGAAGAAAGTCGTTGCAGAGGTTTAGCCGCCTTGTGGCGTCTCAACATATGCCGT 2097 Query 2307 TGATCGTTGTTATGTTGTTTCCGGTTAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTA 2366 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2098 TGATCGTTGTTATGTTGTTTCCGGTGAAGTTGTTGTTCCTTGGAGCTTTCAACGTCTTTA 2157 Query 2367 GTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTAT 2399 ||||||||||||||||||||||||||||||||| Sbjct 2158 GTTTCCGTTGAAAAGTTTCTTTTGGCGGGTTAT 2190 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98387102835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5