BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02690.2
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918924 jgi|Araly1|918924|scaffold_100205.1 1783 0.0
Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1 1037 0.0
> Ahg918924 jgi|Araly1|918924|scaffold_100205.1
Length=1178
Score = 1783 bits (965), Expect = 0.0
Identities = 1076/1130 (95%), Gaps = 5/1130 (0%)
Strand=Plus/Plus
Query 118 TTGATTCGATTAAGCT-AACCATGTCTTACAAACCAAGCGCGAAGACTGAGGTTCGCCGG 176
|||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 1 TTGATTCGATTAAGCTCTACCATGTCTTATAAACCGAGTGCGAAGACTGAGGTTCGTCGG 60
Query 177 AACAGGTATAAAGTATCTGTGGACGCCGATGAAGGTCGCCGGAGACGGGAGGATAACATG 236
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGGTATAAGGTATCTGTGGACGCCGATGAAGGTCGCCGGAGACGGGAGGATAACATG 120
Query 237 GTGGAGATCCGGAAGAACAAGAGAGAGGAGAACTTGCAGAAGAAGCGGCGTGAAGGTTTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGGAGATCCGGAAGAACAAGAGAGAGGAGAACTTGCAGAAGAAGCGGCGTGAAGGTTTT 180
Query 297 AATCCTTCCATGGCGTCACAGCCAGGGCAGGATTTCTCCTCGTCTCTCCCTACGGAAACG 356
| ||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||| |
Sbjct 181 ACTCCTTCCATGGGGTCGCAGCTAGGGCAGGATTTCTCCTCGTCTCTTCCTACGGAAAAG 240
Query 357 AGATTGGAGAATATACAACAGATGATTGCTGGAGTAATGTCAGAGGATAGAGACTTACAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 241 AGATTGGAGAATATACAACAGATGATTGCTGGAGTAATGTCAGAGGATAGAAACATACAA 300
Query 417 TTGGAGGCGACGGCTAGCTTCAGGAGATTGCTTTCAATTGAGCGAAATCCTCCAATCAAT 476
|||||||||||||| ||||||||| |||||||||||||||||| || ||||| ||||||
Sbjct 301 CTGGAGGCGACGGCTGGCTTCAGGAAATTGCTTTCAATTGAGCGTAACCCTCCGATCAAT 360
Query 477 GAAGTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAATTTCTTTCCAGGGATGACTTC 536
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GAAGTTGTTCAATCTGGTGTTGTTCCTCGCATTGTGCAATTTCTTTCCAGGGATGACTTC 420
Query 537 ACTCAACTTCAGTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTCAACTTCAGTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAG 480
Query 597 AACACTAGGGTCATTATTGATAGTGGTGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCT 656
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AACACTAAAGTCATTATTGATAGTGGGGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCT 540
Query 657 GCAAGTGAGGAAGTTCGAGAACAGGCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCG 716
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 GCAAGTGATGAAGTCCGAGAACAGGCTGTCTGGGCATTGGGAAACGTTGCTGGTGACTCG 600
Query 717 CCAAAATGTCGTGATCATGTCCTAAGTTGTGAGGCTATGATGTCTCTTCTGGCTCAATTC 776
||||| || |||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 601 CCAAAGTGCCGTGATCATGTCCTAAGTTGCGAGGCCATGATGTCTCTTTTGGCTCAATTC 660
Query 777 CATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGC 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCTGC 720
Query 837 AGAGGGAAGCCGCAGCCTGCATTTGAACAGCAGACAAAAGCAGCTTTACCAGCTCTTGAG 896
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 721 AGAGGGAAGCCGCAGCCTGCATTTGAACAG-A--CAAAAGCAGCTTTACCAGCTCTTGAG 777
Query 897 CGCCTTCTGCATTCAACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCATAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CGCCTTCTGCATTCAACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCATAT 837
Query 957 CTCTCTGATGGTACAAACGAGAAAATACAAACTGTTATCGACGCTGGTGTCATCCCTCGC 1016
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 838 CTATCTGATGGTACAAACGAGAAAATACAAACTGTTATCGACGCTGGCGTCATACCTCGT 897
Query 1017 CTTGTTCAGCTCTTGGCTCATCCATCGCCCTCAGTTCTGATTCCAGCTCTCCGTACAATT 1076
|||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||
Sbjct 898 CTTGTTCAGCTCTTAGCTCATCCATCACCCTCAGTTCTGGTTCCAGCTCTCCGTACCATT 957
Query 1077 GGTAACATTGTAACCGGAGATGATATTCAGACTCAGGCGGTTATTAGCAGTCAAGCGCTT 1136
||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||
Sbjct 958 GGTAATATTGTAACCGGAGATGATCTTCAGACTCAGGAGGTTATTAACAGTCAAGCGCTT 1017
Query 1137 CCTGGTCTGTTAAACCTTTTGAAGAACACATACAAGAAGAGTATCAAGAAGGAAGCTTGC 1196
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCTGGTTTGTTAAACCTTTTGAAAAACACATACAAGAAGAGTATCAAGAAGGAAGCTTGC 1077
Query 1197 TGGACTATCTCTAACATTACAGCTGGGAACACAAGTCAAATTCAAGAAGT 1246
||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1078 TGGACGATCTCTAACATTACAGCTGGGAACTCAAGTCAAATTCAA-AAGT 1126
> Ahg490357 jgi|Araly1|490357|fgenesh2_kg.6__3491__AT4G02150.1
Length=1735
Score = 1037 bits (561), Expect = 0.0
Identities = 1211/1519 (80%), Gaps = 67/1519 (4%)
Strand=Plus/Plus
Query 138 ATGTCT-TACAAACCAAGCGCGAAGACTGAGGTTCGCCGGAACAGGTATAAAGTAT-CTG 195
|||||| | || ||| ||||||||||| ||||| || |||||| |||| ||||| | | |
Sbjct 82 ATGTCTCT-CAGACCTAGCGCGAAGACGGAGGTACGACGGAACCGGTACAAAGT-TGCGG 139
Query 196 TGGACGCCGATGAAGGTCGCCGGAGACGGGAGGATAACATGGTGGAGATCCGGAAGAACA 255
| || || || ||||| || ||||| || |||||||||||||| |||||| |||||||||
Sbjct 140 TCGATGCGGAGGAAGGACGGCGGAGGCGAGAGGATAACATGGTTGAGATCAGGAAGAACA 199
Query 256 AGAGAGAGGAGAACTTGCAGAAGAAGCGGCGTGAAGGTTTTA-ATCCTTCCATGGCGTCA 314
|||||||||| || |||||||||||||| || || || | | | |||| ||||| |
Sbjct 200 AGAGAGAGGAAAATTTGCAGAAGAAGCGACGCGAGGGACTCACGT-CTTCTATGGC-TTT 257
Query 315 CAGC-CAG-GGCAGGA-TTTCTCCTC-GTCTCTCCCTAC-G-GAAACGAGATTGGAGAAT 368
|| ||| || ||| | | | ||| || | | ||| | | ||| || ||
Sbjct 258 TGGCTCAGCCGCGGGACAAACGGAACAGGATCTTTCTTCAGCGAAGC-A-ATT-GA-AAG 313
Query 369 AT-A-C-AACAG--ATGATTGCTGGAGTAAT-GTCAGAGGATAG-AGACTTACAATTGGA 421
|| | | | ||| ||| |||||||| | | |||||||||||| | ||| |||| ||||
Sbjct 314 ATAATCTACCAGCTATGGTTGCTGGAAT-CTGGTCAGAGGATAGCA-ACTCACAACTGGA 371
Query 422 GGCGACGGCTAGCTT-CAGGAGA-TTGCTTTCAATTGAGCGAAATCCTCCAATCAATGAA 479
||| || | ||| | ||| | || ||||| ||||||| ||| ||||| |||||||||
Sbjct 372 GGCAACAAATCTCTTGC-GGAAACTT-CTTTCGATTGAGCAAAACCCTCCTATCAATGAA 429
Query 480 GTTGTTCAATCTGGTGTTGTTCCTCACATTGTGCAA-TTTCTTTCCAGGGATGAC-TTCA 537
||||| ||||||||||||||||||| ||||| || |||||||||||||||||| |||
Sbjct 430 GTTGTACAATCTGGTGTTGTTCCTCGTGTTGTG-AAGTTTCTTTCCAGGGATGACTTTC- 487
Query 538 CTC-AACTTCAGTTTGAGGCAGCTTGGGCGCTTACCAATATCGCTTCAGGGACATCTGAG 596
| | |||||||||||||||||||||||||||| ||||| || |||||||||||||| |||
Sbjct 488 C-CAAACTTCAGTTTGAGGCAGCTTGGGCGCTCACCAACATTGCTTCAGGGACATCAGAG 546
Query 597 AACACTAGGGTCATTATTGATAGTGGTGCTGTCCCTTTATTCGTCAAACTTCTTAGTTCT 656
||||| | ||||| ||||| |||||||||||||| ||||| || ||||||| || |||
Sbjct 547 AACACAAATGTCATCATTGAAAGTGGTGCTGTCCCGATATTCATCCAACTTCTCAGCTCT 606
Query 657 GCAAGTGAGGAAGTTCGAGAACAGGCTGTATGGGCATTGGGAAACGTTGCTGGTGACTCG 716
|| ||||| || || || ||||||||||| |||||| ||||||| || ||||| |||||
Sbjct 607 GCTAGTGAAGATGTCCGCGAACAGGCTGTTTGGGCACTGGGAAATGTGGCTGGAGACTCA 666
Query 717 CCAAAATGTCGTGATCAT-GTCCTAAGTTGTGAG-GCTATGATGTCTCTTCTGGCTCAAT 774
|||||||| ||||||| | |||||||| | || | || |||||| |||||||| ||||||
Sbjct 667 CCAAAATGCCGTGATC-TAGTCCTAAGCTATG-GTGCCATGATGCCTCTTCTGACTCAAT 724
Query 775 TCCATGAGCATTCAAAGCTCTCCATGCTGAGGAATGCTACATGGACATTATCAAATTTCT 834
|| ||||| || ||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 725 TCAATGAGAATACAAAGCTTTCAATGCTGAGGAATGCTACATGGACATTATCAAACTTCT 784
Query 835 GCAGAGGGAAGCCGCAGCCTGCATTTGAACAGCAGACAAAAGCAGCTTTACCAGCTCTTG 894
||||||||||||| | |||| | |||| | | |||||| || |||||||||||| |||||
Sbjct 785 GCAGAGGGAAGCCCCCGCCTTCTTTTG-A-A-CAGACACAACCAGCTTTACCAGTTCTTG 841
Query 895 AGCGCCTTCTGCATTCAACCGACGAAGAAGTTCTCACAGATGCATCCTGGGCTCTCTCAT 954
|||||||| |||| |||| || |||||||||||||||||||||| ||||||||| ||||
Sbjct 842 AGCGCCTTGTGCAATCAATGGATGAAGAAGTTCTCACAGATGCATGCTGGGCTCTGTCAT 901
Query 955 ATCTCTCTGAT-GGTACAAACGAGAAAATACAAACTGTTATCGACGCTGGTGTCATCCCT 1013
| ||||| ||| | ||||||| ||||||||| | || ||||| || || || |||||
Sbjct 902 ACCTCTCGGATAACT-CAAACGACAAAATACAAGCAGTCATCGATGCAGGAGTTGTCCCT 960
Query 1014 CGCCTTGTTCAGCTCTTGGCTCATCCATCGCCCTCAGTTCTGATTCCAGCTCTCCGTACA 1073
||||| | |||||||| |||||| | || || ||||| |||||||| ||||| ||||||
Sbjct 961 CGCCTCATCCAGCTCTTAGCTCATTCGTCACCATCAGTGCTGATTCCCGCTCTTCGTACA 1020
Query 1074 ATTGGTAACATTGTAACCGGAGATGATATTCAGACTCAGGCGGTTAT-TAGCAGTCAAGC 1132
||||| || ||||||||||| |||||| | ||||||||| |||| | | || ||||||
Sbjct 1021 ATTGGAAATATTGTAACCGGCGATGATCTACAGACTCAGATGGTTCTCGACCA-TCAAGC 1079
Query 1133 GCTTCCTGGTCTGTTAAACCTTTTGAAGAACACATACAAGAAGAGTATCAAGAAGGAAGC 1192
||||||| |||| || |||||| | || ||||| ||||||||||||||||||||||||||
Sbjct 1080 GCTTCCTTGTCTTTTGAACCTTCTAAAAAACACTTACAAGAAGAGTATCAAGAAGGAAGC 1139
Query 1193 TTGCTGGACTATCTCTAACATTACAGCTGGGAACACAAGTCAAATTCAAGAAGTGTTTCA 1252
||||||||||||||| ||||||||||||||||| ||| ||| || |||| |||| || |
Sbjct 1140 TTGCTGGACTATCTCAAACATTACAGCTGGGAATGCAAATCAGATACAAGCAGTGATTGA 1199
Query 1253 GGCAGGCATTATTCGGCCTCT-GATTAACCTGCTTGAGA-TCGGTGAATTCGAAATTAAG 1310
||||| || || | | |||| | || ||||| | | | | || |||||| | ||
Sbjct 1200 AGCAGGTATAATCCAGTCTCTTGTTTGGG-TGCTTCAAAGT-GCAGAGTTCGAAGTAAAA 1257
Query 1311 AAAGAAGCTGTTTGGGCAATCTCTAATGCAACTTCTGGTGGCAATCATGACCAAATCAAG 1370
|||||||||| ||||| |||||| ||||| ||||||||||||| |||||| |||||||||
Sbjct 1258 AAAGAAGCTGCTTGGGGAATCTCAAATGCTACTTCTGGTGGCACTCATGATCAAATCAAG 1317
Query 1371 TTTCTCGTGAGCCAAGGCTGCATCAGACCCCTGTGTGATCTCCT-ACCGTGTCCC-GATC 1428
||||| |||||||||||||| |||| ||| | || |||||||| || || ||| ||||
Sbjct 1318 TTTCTAGTGAGCCAAGGCTGTATCAAACCTATATGCGATCTCCTTACT-TG-CCCAGATC 1375
Query 1429 C-AAGGGTTGTCACAGT--GACTTTGGAAGGTCTAGAAAACATTCTCAA-AGTAGGTGAA 1484
|| | | | || || | ||| | ||| ||||| ||||||||| | | || ||
Sbjct 1376 TGAAAG-TCATAACGGTTTG-CTTAG-AAGCACTAGAGAACATTCTCGTGATT-GGAGAG 1431
Query 1485 GCCGAGAAGAATCT-AGG-CAACACAGGAAACGATAATCTGTACGCGCAGATGATTGAAG 1542
|| |||||||| || ||| || |||||| |||| || || ||||| || |||||||| |
Sbjct 1432 GCAGAGAAGAA-CTTAGGTCAT-ACAGGAGACGACAACCTCTACGCTCAAATGATTGACG 1489
Query 1543 ACGCAGATGGTTTGGACAAGATTGAGAATCTTCAGAGTCACGATAATAATGAGATTTATG 1602
| ||||| || || || ||||||||||||||||||||||| || || ||||| || ||||
Sbjct 1490 AAGCAGAAGGGTTAGAGAAGATTGAGAATCTTCAGAGTCATGACAACAATGATATATATG 1549
Query 1603 AGAAAGCAGTCAAAATCCT 1621
| ||||| || || |||||
Sbjct 1550 AAAAAGCCGTGAAGATCCT 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72904728930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5