BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02700.1
Length=1030
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470228 jgi|Araly1|470228|fgenesh2_kg.1__182__AT1G02700.1 1539 0.0
> Ahg470228 jgi|Araly1|470228|fgenesh2_kg.1__182__AT1G02700.1
Length=1017
Score = 1539 bits (833), Expect = 0.0
Identities = 948/1003 (95%), Gaps = 10/1003 (1%)
Strand=Plus/Plus
Query 38 GATGATGATGCAATCCCGATTATTAGCGTTTGCTTCAGCGGCGCGTTCACGTGTTCGACC 97
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 15 GATGATGATGCAATCCCGATTATTAGCGTTTGCTTCTGCGGCGCGTTCCCGTGTTCGACC 74
Query 98 AATCGCTCAAAGGCGTTTAGCGTTTGGATCATCCACGTCTGGTCGCACAGCTGATCCAGA 157
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 75 AATCGCTCAAAGGCGTTTAGCGTTTGGATCATCCACGTCTGGCCGCACCGCTGATCCAGA 134
Query 158 GATCCATGCCGGTAACGATGGAGCCGATCCAGCTATCTATCCGAGAGACCCTGAAGGTAT 217
||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct 135 GATCCATTCCGGTAACGATGGAGCTGATCCAGCTATTTATCCGAGAGACCCTGAAGTTAT 194
Query 218 GGATGATGTTGCAAACCCTAAAACGGCGGCGGAAGAAATCGTAGACGATACTCCCCGACC 277
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 195 GGATGATGTTGCAAACCCTAAAACGGCGGCGGATGAAATCGTAGACGATACTCCACGACC 254
Query 278 GAGTTTAGAAGAGCAACCGCTTGTACCGCCGAAATCTCCACGCGCCACTGCGCACAAGCT 337
|||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 255 GAGTTTAGAAGAGCAACCGCTTGTACCGCCTAAATCTCCACGCGCCACCGCACATAAGCT 314
Query 338 AGAGAGTACTCCCGTTGGTCACCCGTCAGAACCTCATTTCCAACAGAAACGAAAAAACTC 397
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 AGAGAGTACTCCTGTTGGTCACCCGTCAGAACCTCATTTCCAACAGAAACGAAAAAACTC 374
Query 398 CACCG---CT---TCTCCGCCGTCGCTTGATTCCGTGAGCTGTGCTGGTTTAGACGGTTC 451
||||| || |||||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 375 CACCGCCTCTCCGTCTCCGCCGTCGCTTGATTCTGTGAGCTGTGCTGGTCTAGACGGCTC 434
Query 452 ACCATGGCCGAGAGACGAAGGAGAAGTGGAAGAGCAAAGGCGAAGAGAAGATGAAACAGA 511
||| ||||| |||||||||||||||| ||| ||||| ||||| ||||||| |||||||||
Sbjct 435 ACCGTGGCCAAGAGACGAAGGAGAAGCGGAGGAGCAGAGGCGGAGAGAAGGTGAAACAGA 494
Query 512 GAGTGACCAAGAGTTTTACAAACACCACAAAGCTTCTCCGTTATCGGAGATTGAATTCGC 571
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 495 GAGCGACCAAGAGTTTTACAAACACCACAAAGCTTCTCCGTTATCGGATATTGAATTCGC 554
Query 572 CGATACTCGGAAACCTATTACGCAAGCTACCGATGGAACTGCCTACCCAGCCGGGAAAGA 631
|||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||
Sbjct 555 CGATACTCGGAAACCTATTACGCAAGCTACTGATGGAACGGCGTACGCAGCCGGGAAAGA 614
Query 632 TGTGATCGGATGGTTACCGGAGCAGCTAGACACGGCGGAAGAATCTTTGATGAAAGCAAC 691
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TGTGATCGGATGGTTGCCTGAGCAGCTAGACACGGCGGAAGAATCTTTGATGAAAGCAAC 674
Query 692 AATGATATTCAAACGCAACGCAGAACGTGGCGATCCTGAAACGTTTCCTCATTCTAGAAT 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 GATGATATTCAAACGCAACGCAGAACGTGGCGATCCTGAAACGTTTCCTCATTCTAGAAT 734
Query 752 CTTAAGAGAAATGAGAGGCGAGTGGTTTTAAACTAAAGACCACAATAAAATGTT-AAGAA 810
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 735 CTTAAGAGAAATGAGAGGCGAGTGGTTTTAAACTAAAGACTACAATAAAATGTTGAAAAA 794
Query 811 GTGTCTGAATAAACTTTTGTCAATTAGCTTCATTGAGACATTTTGGTTCCTTACGAAAGT 870
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 795 GTGTCTGAATAAACTTTTGTCAATTAGCTTCATTAAGACATTTTGGTTCCTTACCAAAGT 854
Query 871 GAACAAAGCCTCTTTATGTC--CCAAATCTCTAGAAACCCTAAAATCAAAAGAATTTGTT 928
||||||||||||||||| || |||||||| |||||||||||||||||| ||||||||||
Sbjct 855 GAACAAAGCCTCTTTATATCTTCCAAATCTTTAGAAACCCTAAAATCAAGAGAATTTGTT 914
Query 929 CGTACATTATGGATTACAGTTATGGTATGGTCCAAAAAAGGGTTTTGTTCTTGAATC-AA 987
|| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 915 CGAACATTATGGATTACAGTTATGATATGGTCCAAAAAAGGGTTTTGTTCTTCAATCCAA 974
Query 988 AGCTGTAAAATTTAAATGGTATCAGATTCCAAAGTTATTGCTT 1030
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 975 AGCTGTAAAATTAAAATGGTATCAGATTCCAAAGTTATTGCTT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38313531585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5