BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02720.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470231 jgi|Araly1|470231|fgenesh2_kg.1__185__AT1G02720.1 2156 0.0
Ahg490360 jgi|Araly1|490360|fgenesh2_kg.6__3494__AT4G02130.1 732 0.0
Ahg472678 jgi|Araly1|472678|fgenesh2_kg.1__2632__AT1G24170.1 148 1e-34
> Ahg470231 jgi|Araly1|470231|fgenesh2_kg.1__185__AT1G02720.1
Length=1383
Score = 2156 bits (1167), Expect = 0.0
Identities = 1266/1314 (96%), Gaps = 5/1314 (0%)
Strand=Plus/Plus
Query 117 AAAAGCAGAGGAGAAGAGAAGAGAGACGGCGCAGAGTAGCATTGACATGCGAAATGTGCC 176
||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAACGCAGAGGAGAAGAAAAGAGAGAAGGCGCAGAGTAGCATTGACATGCGAAATGTGCC 60
Query 177 TCTCAGAATTCTTATCCTACGCCTGTTTCAATTTCTTCTCCACCATGAAAGTTTTCTGAT 236
|||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 TCTCAGGGTTCTTATCTTACGCCTGTTTCAATCTCTTCCCCACCATGAAAGTTTTCTGAT 120
Query 237 TGCTCTTTCCTCAGAAATTTTGAAGCTTCGTAGTTTCTTCTGCATTCCTCGCAATGCATT 296
|||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGCTGTTTCCTCTGAAA-TTTGAAGCTTCGTAGTTTCTTCTGCATT-CTCGCAATGCATT 178
Query 297 GGATTACGAGATTCTCTGCTTTCTTCTCCGCCGCATTAGCCATGATTCTCCTTTCTCCTT 356
|||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||
Sbjct 179 GGATTACGAGATTCTCCGCCATCTTCGCTGCCGCATTAGCCATGATTCTCCTTTCTCCTT 238
Query 357 CGCTCCAATCCTTTTCTCCGGCGGCAGCTATCCGATCATCTCACCCCTACGCCGACGAAT 416
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CACTCCAATCCTTTTCTCCGGCGGCAGCTATCCGATCATCTCACCCCTACGCCGACGAAT 298
Query 417 TCAAACCCCAACAAAACTCCGATTACTCCTCCTTCAGAGAATCTCCAATGTTCCGTAACG 476
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 299 TCAAACCACAACAAAACTCCGATCACTCCTCCTTCAGAGAATCTCCAATGTTCCGTAATG 358
Query 477 CCGAACAATGCAGATCTTCCGGCGAAGATTCCGGCGTCTGTAACCCTAATCTCGTCCACG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCGAACAATGCAGATCTTCCGGCGAAGATTCCGGCGTCTGTAACCCTAATCTCGTCCACG 418
Query 537 TAGCCATCACTCTCGACATCGATTACCTCCGTGGCTCAATCGCAGCCGTCAATTCGATCC 596
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 419 TAGCCATCACACTCGACATCGATTACCTCCGTGGCTCAATCGCAGCCGTGAATTCAATCC 478
Query 597 TCCAGCACTCAATGTGCCCTCAAAGCGTCTTCTTCCACTTCCTCGTCTCCTCCGAG-TCT 655
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 479 TCCAGCACTCAATGTGTCCTCAAAGCGTCTTCTTCCACTTCCTCGTCTCCTCCGAGAT-T 537
Query 656 CAAAACCTAGAATCTCTGATTCGTTCTACTTTCCCCAAATTGACGAATCTCAAAATTTAC 715
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 CAAAACCTAGAATCTCTGATTCGTTCAACTTTCCCCAAATTGACGAATCTCAAAATTTAC 597
Query 716 TATTTTGCCCCTGAGACCGTACAGTCTTTGATTTCATCTTCCGTGAGACAAGCCCTAGAG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TATTTTGCCCCTGAGACCGTACAGTCTTTGATTTCATCTTCCGTGAGACAAGCCCTAGAG 657
Query 776 CAACCGTTGAATTACGCCAGAAATTACTTGGCGGATCTGCTCGAGCCTTGCGTTAAGCGA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAACCGTTGAATTACGCCAGAAATTACTTGGCGGATCTGCTCGAGCCTTGCGTTAAGCGA 717
Query 836 GTCATCTACTTGGATTCGGATCTCGTCGTCGTCGATGATATCGTCAAGCTTTGGAAAACG 895
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GTCATCTACTTGGATTCGGATCTCGTCGTCGTTGATGATATCGTCAAGCTTTGGAAAACG 777
Query 896 GGTTTAGGCCAGAGAACAATCGGAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATAC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GGTTTAGGCCAGAGAACAATCGGAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATAC 837
Query 956 TTCACCGGAGGTTTTTGGTCAGATAAGAGGTTTAACGGGACGTTCAAAGGGAGGAACCCT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 TTCACCGGAGGTTTTTGGTCAGATAAGAGGTTTAACGGGACGTTCAAAGGGAGAAACCCT 897
Query 1016 TGTTACTTCAATACTGGTGTAATGGTGATTGATTTGAAGAAGTGGAGACAATTTAGGTTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 898 TGTTACTTCAATACTGGTGTAATGGTGATTGATTTGAAGAAGTGGAGACGATTTAGGTAC 957
Query 1076 ACGAAACGAATTGAGAAATGGATGGAGATTCAGAAGATAGAGAGGATTTATGAGCTTGGT 1135
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 958 ACGAAACGCATTGAGAAATGGATGGAGATTCAGAAGATGGAGAGGATTTATGAGCTGGGT 1017
Query 1136 TCTCTTCCTCCGTTTCTTCTGGTATTTGCTGGTCATGTAGCTCCGATTTCACATCGGTGG 1195
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1018 TCTCTTCCTCCGTTTCTTCTGGTATTTGCTGGTCATGTAGCTCCGATTTCGCATCGGTGG 1077
Query 1196 AATCAACATGGGCTTGGTGGTGATAATGTTAGAGGTAGTTGCCGTGATTTGCATTCTGGT 1255
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1078 AATCAACATGGACTTGGTGGTGATAATGTTAGAGGTAGCTGCCGTGATTTGCATTCTGGT 1137
Query 1256 CCTGTGAGTTTGCTTCACTGGTCAGGTAGTGGTAAGCCATGGTTAAGACTCGATTCCAAG 1315
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1138 CCTGTGAGTTTGCTTCATTGGTCAGGTAGTGGTAAGCCATGGTTAAGACTTGATTCCAAG 1197
Query 1316 CTTCCATGTCCTTTAGACACATTGTGGGCACCTTATGATTTGTATAAACACTCCCATTGA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTTCCATGTCCTTTAGACACATTGTGGGCACCTTATGATTTGTATAAACACTCCCATTGA 1257
Query 1376 TGCCAATTTC-GAGTTCGACATATTCATGGTCATGGGGACTAAACCGAAGATAG 1428
|| |||| ||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 1258 CACCGGTTTCTGAGTTCGACATATTCATCGCCATGAGGACTAAACCGAAGATAG 1311
> Ahg490360 jgi|Araly1|490360|fgenesh2_kg.6__3494__AT4G02130.1
Length=1517
Score = 732 bits (396), Expect = 0.0
Identities = 712/862 (83%), Gaps = 32/862 (4%)
Strand=Plus/Plus
Query 530 GTCCACGTAGCCATCAC-TCTCGACATCGATTACCTCCGTGGCTCAATCGCAGCCGTCAA 588
|||||||| || ||||| | | ||| | || ||||| |||||||||||||||||||| ||
Sbjct 420 GTCCACGTGGCGATCACGT-TAGACGTAGAGTACCTGCGTGGCTCAATCGCAGCCGTGAA 478
Query 589 TTCGATCCTCCAGCACTCAATGTGCCCTCAAAGCGTCTTCTTCCACTTCCTCGTC-TCCT 647
||| ||||| |||||||| || || || | |||||||||||||||||| ||||| | ||
Sbjct 479 TTCAATCCTTCAGCACTCGATTTGTCCAGAGAGCGTCTTCTTCCACTTCATCGTCGT-CT 537
Query 648 CCGA-GTCTCAAAACC---TAGAATCTCTGATTCGTTCTACTTTCCCCAAATTGACGAAT 703
|||| | | ||||| | || || ||| | | || | |||||| ||||| |||
Sbjct 538 CCGAGGAAAC-AAACCTGTTGGAGTCGCTGGTGAGATCGATTTTCCCGGGATTGA--AAT 594
Query 704 CTCAAAATTTACTATTTTGCCCCTGAGACCGTACAGT-CTTTGATTTCATCTTCCGTGAG 762
|||| |||||| |||||||||||||||| || | || ||||||||| |||||||||||
Sbjct 595 -TCAATATTTACGATTTTGCCCCTGAGACTGTTC-GTGGTTTGATTTCTTCTTCCGTGAG 652
Query 763 ACAAGCCCTAGAGCAACCGTTGAATTACGCCAGAAATTACTTGGCGGATCTGCTCGAGCC 822
|||||| || |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 653 ACAAGCTCTTGAGCAACCTTTGAATTACGCTAGAAATTACTTAGCGGATCTGCTCGAGCC 712
Query 823 TTGCGTTAAGCGAGTCATCTACTTGGATTCGGATCTCGTCGTCGTCGATGATATCGTC-A 881
||| ||||| || ||||| ||||||||||||||||| |||||||||||||| |||| | |
Sbjct 713 TTGTGTTAACCGTGTCATATACTTGGATTCGGATCTTGTCGTCGTCGATGACATCG-CTA 771
Query 882 AGCTTTGGAAAACGGGTTTAGGC-CAGA-GAACAATCGGAGCTCCGGAGTATTGTCACGC 939
||||||||||||| || ||||| | || || | ||||||||||| ||||||||||||||
Sbjct 772 AGCTTTGGAAAACTAGTCTAGGCTC-GAGGATC-ATCGGAGCTCCCGAGTATTGTCACGC 829
Query 940 GAATTTCACGAAATACTTCACCGGAGGTTTTTGGTCAGATAAGAGGTT-TAACGGGACGT 998
||||||||||||||||||||||||||| || ||||| || |||| || | ||||||||
Sbjct 830 GAATTTCACGAAATACTTCACCGGAGGATTCTGGTCGGAGGAGAGATTCTC-CGGGACGT 888
Query 999 TCAAAGGGAGGAACCCTTGTTACTTCAATACTGGTGTAATGGTGATTGAT-TTGAAGAAG 1057
| | ||||||||| |||||||||||||| || ||||| |||||||| ||| || |||||
Sbjct 889 TTAGAGGGAGGAAGCCTTGTTACTTCAACACAGGTGTGATGGTGATAGATCTT-AAGAAA 947
Query 1058 TGGAGACA-ATTTAGGTT-CACGAAACGAATTGAGAAATGGATGGAGATTCAGAAGAT-A 1114
|||||| | | | |||| ||||||||| || |||||||||||||||||||||| || |
Sbjct 948 TGGAGA-AGAGGT-GGTTACACGAAACGTATCGAGAAATGGATGGAGATTCAGA-GAACA 1004
Query 1115 GAGAGGATTTATGAGCTTGGTTCTCTTCCTCCGTTTCTTCTGGTATTT-GCTGGTCATGT 1173
||||||||||| || || || || ||||| ||||||||||| || ||| || ||||| ||
Sbjct 1005 GAGAGGATTTACGACCTCGGCTCGCTTCCACCGTTTCTTCTTGT-TTTCGCCGGTCACGT 1063
Query 1174 AGCTCCGATTTCACATCGGTGGAATCAACATGGGCTTGGTGGTGATAATGTTAGAGGTAG 1233
||||| || || || || ||||| || ||||| ||||||||||| ||||||||||||||
Sbjct 1064 GGCTCCCATCTCTCACCGTTGGAACCAGCATGGACTTGGTGGTGACAATGTTAGAGGTAG 1123
Query 1234 TTGCCGTGATTTGCATTCTGGTCCTGTGAGTTTGCTTCACTGGTCAGGTAGTGGTAAGCC 1293
|| |||||||||||| ||||||| ||||||||||| || ||||| |||||||| |||||
Sbjct 1124 CTGTCGTGATTTGCATCCTGGTCCAGTGAGTTTGCTGCATTGGTCTGGTAGTGGCAAGCC 1183
Query 1294 ATGGTTAAGACTCGATTCCAAGCTTCCATGTCCTTTAGACACATTGTGGGCACCTTATGA 1353
|||| ||||||||||||| || | || ||||| |||||| |||| ||| | ||||| ||
Sbjct 1184 ATGGATAAGACTCGATTCGAAACGGCCTTGTCCGTTAGACGCATTATGGACGCCTTACGA 1243
Query 1354 TTTGTATAAACACTCCCATTGA 1375
|||||| ||| || ||||||
Sbjct 1244 CTTGTATCGACATTCGCATTGA 1265
> Ahg472678 jgi|Araly1|472678|fgenesh2_kg.1__2632__AT1G24170.1
Length=1588
Score = 148 bits (80), Expect = 1e-34
Identities = 351/475 (74%), Gaps = 46/475 (10%)
Strand=Plus/Plus
Query 914 ATCGGAGCTCCGGAGTATTGTCACGCGAATTTCACGAAATACTTCAC--CGGAGGTTTTT 971
||||||||||||||||||||||||||||| ||||| | || ||||| | | |||| |
Sbjct 810 ATCGGAGCTCCGGAGTATTGTCACGCGAACTTCACTCAGTATTTCACTTCCG-GGTTCT- 867
Query 972 GGTCAGATAAGAGGTTTAACGGGACGT--TCAAAGGG--AGGAACCCTTGTTACTTCAAT 1027
||||||| | | |||| |||| | | || ||| | |||| ||| || |||||
Sbjct 868 GGTCAGACCCG-GCTTTACCGGGTC-TAATCTC-GGGTCAAAAACC-TTGCTATTTCAAC 923
Query 1028 ACTGGTGTAATGGTGATTGAT-TTG-AAGAAGTGGAGACAATTTAGGTT-CACGAAACGA 1084
|| || || |||||||| ||| ||| |||| |||||| || | || || || | ||
Sbjct 924 ACAGGAGTGATGGTGATGGATCTTGTAAGA--TGGAGAGAAGGGAA-TTACA-GAGA-GA 978
Query 1085 AT-T-GAGAAATGGATGGAGATT-CAGAAGATAGA-GAGGATTTATGAGCTTGGTTCTCT 1140
| | ||| |||||||| | ||| ||||||| ||| ||| || || || ||||| || |
Sbjct 979 AGCTAGAGCAATGGATGCA-ATTGCAGAAGA-AGAAGAGAATCTACGATCTTGGATCA-T 1035
Query 1141 T-CCTCCGTTTCTTCTGGTATTTGCTGGTCATGTAGCTCCGATTTCA-CATCGGTGGAAT 1198
| || ||||||||| |||| ||||||||| |||| | | ||| | ||| | |||||
Sbjct 1036 TACCACCGTTTCTTTTGGTGTTTGCTGGTAATGTTGAAGCTATTG-ATCATAGATGGAAC 1094
Query 1199 CAACATGGGCTT-GGTGGTGATAATGTTA-GAGGTAGTTGCCG-TGATTTGCATTCTGGT 1255
|||||||| || || || || ||| | | |||| ||||| || | ||| |||| |||||
Sbjct 1095 CAACATGGT-TTAGGAGGAGACAATAT-ACGAGGAAGTTGTCGGTCATT-GCATCCTGGT 1151
Query 1256 CCTGTGAGTTTGCTT-CACTGGTCAGGTAGTGGTAAGCCATGG-TTAAGACTCGATTCCA 1313
|||||||||||| || || ||| |||| |||||||||||| ||| |||| ||| |
Sbjct 1152 CCTGTGAGTTTG-TTGCATTGGAGTGGTAAAGGTAAGCCATGGGTTA-GACTTGATGAGA 1209
Query 1314 AGCTTCCATGTCCTTTAGA-CA-CATTGTGGGCA-CCTTATGATTTGTATAAACA 1365
|| || ||||| || || || | || |||| | || |||||||||||||||||
Sbjct 1210 AGAGACCTTGTCCGTTGGATCATC-TT-TGGG-AGCCATATGATTTGTATAAACA 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5