BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02740.1
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470233 jgi|Araly1|470233|fgenesh2_kg.1__187__AT1G02740.1 1694 0.0
> Ahg470233 jgi|Araly1|470233|fgenesh2_kg.1__187__AT1G02740.1
Length=1112
Score = 1694 bits (917), Expect = 0.0
Identities = 1022/1072 (95%), Gaps = 10/1072 (1%)
Strand=Plus/Plus
Query 10 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTAACAACCGATGATTTCA 69
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTTACAACCGTTGATTTCA 60
Query 70 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 120
Query 130 AAGATTTGCCTCTTCTTCTGCTACCTGCTCCTCCCGGCCACTTCGAAGAAGGAGAGAGAG 189
|||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 AAGACTTGCCTCTTCTTCTTCTACCTGCTCCTCCCGGTCACTTCGAAGAAGGAGAGAGAG 180
Query 190 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 240
Query 250 ACAATGAATGGAAATATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGA 309
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAATGAATGGAAGTATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGG 300
Query 310 TAAGGCTGGACTGTCTGTTGAAACATTCAGATGAGAATATTGAGAAACAGAAAGAACAGG 369
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 301 TAAGTCTGGACTGTCTGTTGAAACATTCAGAGGAGAATATTGAGAAACAGAAGGAACAGG 360
Query 370 GTTTGAAACAGCAAGGGATTAAGAGTGCTATGGCTTGGAAAGTGTCAAAGATGAAACCTA 429
||||||| |||||||| |||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 361 GTTTGAAGCAGCAAGGAATTAAGAGTGCTATGGCTTGGAGAGTATCAAAGATGAAACCTA 420
Query 430 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 480
Query 490 ATGTGCTTCCCTCTGACAACCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 549
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATGTGGTTCCCTCTGACAATCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 540
Query 550 TTCTTGACGATTTTGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 609
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAATTGACGATTATGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 600
Query 610 CAAATGTGGATGGCATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAACATGGCAGGG 669
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 601 CAAATGTGGATGACATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAGCATAGCAGGG 660
Query 670 TAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTAC 729
|||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 661 TAACTGATTCATTAGAGGAAATTCTCAAAGGTTTGCGTTGTTACTTTGACAAAGCTTTAC 720
Query 730 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTACGAGGAATCCGTATCAGGGGGTG 789
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 721 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAATACGAGGAATCCGTATCAGCGGATG 780
Query 790 TTTCTCCTTCAACTGTGTACGGAGCAGAGCATTTGTTGCGACTCTTTGTGAAATTACCGG 849
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 781 TTTCTCCCTCAACTGTGTATGGAGCAGAGCATTTGTTACGACTCTTTGTGAAATTGCCGG 840
Query 850 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 900
Query 910 TTGATATTCTCAGGTTCTTGAGGAAGAATCAGAGTGTGCTTTTTGTATCGACATACAAAG 969
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 901 TTGATATTCTTAGGTTCTTGAGGAAGAATCAGAGTGTGTTTTTTGTATCGGCATACAAAG 960
Query 970 CAGTGGAAGAAATGGAGAAGAAAGAAGGTTAGGAAATTGTGCCTAATGACGTGTTCTTGT 1029
||||||||||||||||||||||||||| ||||| | ||||| ||||||||||
Sbjct 961 CAGTGGAAGAAATGGAGAAGAAAGAAGATTAGG---T-GTGCCGAATGACGTGT------ 1010
Query 1030 AAGTATGTGCAGCGAATCTTCTCTTTGTAGTATTTTGTAACGAGACCTAAGA 1081
|||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1011 AAGTATGTGCAGCGAATCTTCTGTTTGTAGTATTATGTAACGAGACCTAAGA 1062
Score = 76.8 bits (41), Expect = 4e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1270 GTTCCGTCTCGATTTTGAAAGTACTTAAACGTCGTTATCGTGTTTGTCTC 1319
|||| ||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1063 GTTCGGTCTCGATTTTCAAAGCACTTAAACGTCGTTATCGTGTTTGTCTC 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5