BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02740.1 Length=1319 Score E Sequences producing significant alignments: (Bits) Value Ahg470233 jgi|Araly1|470233|fgenesh2_kg.1__187__AT1G02740.1 1694 0.0 > Ahg470233 jgi|Araly1|470233|fgenesh2_kg.1__187__AT1G02740.1 Length=1112 Score = 1694 bits (917), Expect = 0.0 Identities = 1022/1072 (95%), Gaps = 10/1072 (1%) Strand=Plus/Plus Query 10 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTAACAACCGATGATTTCA 69 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1 TTTTTGAGATGGGAAGCCCTAACGCCGCCGCCGAGACGGATCTTACAACCGTTGATTTCA 60 Query 70 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCGGAGACACACGACGGGACTCTGGTTCTGATACAGAGACCAACACCGATTGTGACGGAG 120 Query 130 AAGATTTGCCTCTTCTTCTGCTACCTGCTCCTCCCGGCCACTTCGAAGAAGGAGAGAGAG 189 |||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 121 AAGACTTGCCTCTTCTTCTTCTACCTGCTCCTCCCGGTCACTTCGAAGAAGGAGAGAGAG 180 Query 190 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTTAGCCAAACACAGTGATTGCTTCTACGAAGCCAAGGTTCTTAAAGTTGAATTTAAAG 240 Query 250 ACAATGAATGGAAATATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGA 309 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACAATGAATGGAAGTATTTTGTGCATTACATTGGTTGGAACAAAAGTTGGGACGAATGGG 300 Query 310 TAAGGCTGGACTGTCTGTTGAAACATTCAGATGAGAATATTGAGAAACAGAAAGAACAGG 369 |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 301 TAAGTCTGGACTGTCTGTTGAAACATTCAGAGGAGAATATTGAGAAACAGAAGGAACAGG 360 Query 370 GTTTGAAACAGCAAGGGATTAAGAGTGCTATGGCTTGGAAAGTGTCAAAGATGAAACCTA 429 ||||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||||| Sbjct 361 GTTTGAAGCAGCAAGGAATTAAGAGTGCTATGGCTTGGAGAGTATCAAAGATGAAACCTA 420 Query 430 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAAGCCCTAATGTTGCTAGAGGAAGAAAGCGGAAGCAAGATTCTGTTGATACGGAGAAGA 480 Query 490 ATGTGCTTCCCTCTGACAACCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 549 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATGTGGTTCCCTCTGACAATCTTTTAAGTTTCAATATTCCACCAGCATTAAGGAAGCAAC 540 Query 550 TTCTTGACGATTTTGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 609 | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TAATTGACGATTATGAATTTGTTACTCAGATGCAGAAGCTTGTGCAACTTCCGCGTTCTC 600 Query 610 CAAATGTGGATGGCATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAACATGGCAGGG 669 |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 601 CAAATGTGGATGACATCTTGAAGAAGTACATTGACAGCCAAATGAAGAAGCATAGCAGGG 660 Query 670 TAACAGATTCATTAGAGGAAATTCTGAAAGGCTTGCGTTGCTACTTTGACAAAGCTTTAC 729 |||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| Sbjct 661 TAACTGATTCATTAGAGGAAATTCTCAAAGGTTTGCGTTGTTACTTTGACAAAGCTTTAC 720 Query 730 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAGTACGAGGAATCCGTATCAGGGGGTG 789 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || Sbjct 721 CGGTGATGTTGCTTTACAACAATGAACGGAAGCAATACGAGGAATCCGTATCAGCGGATG 780 Query 790 TTTCTCCTTCAACTGTGTACGGAGCAGAGCATTTGTTGCGACTCTTTGTGAAATTACCGG 849 ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct 781 TTTCTCCCTCAACTGTGTATGGAGCAGAGCATTTGTTACGACTCTTTGTGAAATTGCCGG 840 Query 850 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AGTTGCTAGTACATGTGAATATGGCAGAAGAGACATTGAAGGAATTGCAGGACAACTTTG 900 Query 910 TTGATATTCTCAGGTTCTTGAGGAAGAATCAGAGTGTGCTTTTTGTATCGACATACAAAG 969 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 901 TTGATATTCTTAGGTTCTTGAGGAAGAATCAGAGTGTGTTTTTTGTATCGGCATACAAAG 960 Query 970 CAGTGGAAGAAATGGAGAAGAAAGAAGGTTAGGAAATTGTGCCTAATGACGTGTTCTTGT 1029 ||||||||||||||||||||||||||| ||||| | ||||| |||||||||| Sbjct 961 CAGTGGAAGAAATGGAGAAGAAAGAAGATTAGG---T-GTGCCGAATGACGTGT------ 1010 Query 1030 AAGTATGTGCAGCGAATCTTCTCTTTGTAGTATTTTGTAACGAGACCTAAGA 1081 |||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1011 AAGTATGTGCAGCGAATCTTCTGTTTGTAGTATTATGTAACGAGACCTAAGA 1062 Score = 76.8 bits (41), Expect = 4e-13 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 1270 GTTCCGTCTCGATTTTGAAAGTACTTAAACGTCGTTATCGTGTTTGTCTC 1319 |||| ||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 1063 GTTCGGTCTCGATTTTCAAAGCACTTAAACGTCGTTATCGTGTTTGTCTC 1112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49331054598 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5