BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02750.1
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470234 jgi|Araly1|470234|fgenesh2_kg.1__188__AT1G02750.1 1179 0.0
Ahg490351 jgi|Araly1|490351|fgenesh2_kg.6__3485__AT4G02200.1 189 3e-47
> Ahg470234 jgi|Araly1|470234|fgenesh2_kg.1__188__AT1G02750.1
Length=919
Score = 1179 bits (638), Expect = 0.0
Identities = 858/955 (90%), Gaps = 52/955 (5%)
Strand=Plus/Plus
Query 55 GTAGTTTCTTGACATTTTCTTTCTGCTATCTCTTACACAATTGGGTATTTAGCTGACACG 114
|||||||||||||| | |||||| |||||| ||||||||||||||||||||||||||
Sbjct 1 GTAGTTTCTTGACA---T-TTTCTG-TATCTCACACACAATTGGGTATTTAGCTGACACG 55
Query 115 ACGAAGAAGGTCTCTCATCAATTATCTGAGATTTTTACATAAG---AAAGGC-T-CCGA- 168
|||||| ||| || |||||||||||||||||||| | ||| | | | ||
Sbjct 56 ACGAAGGAGG----TC-TCAATTATCTGAGATTTTTATAAAAGCTCCGATTCGTGGAGAT 110
Query 169 -C--AAAGCAGATGGAAGACGATATGTGGTGCGTTAGCTCATCTGGTTCTTCTAGAAGCT 225
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 111 TCATAAATCAGATGGAAGACGATATGTGGTGCGTTAGCTCATCTGGTTCTTCAAGAAGCT 170
Query 226 ATCGATCGGAAACTGCTGCTAAGTATCAATCAGGGCCTTATCAAGATTTGGAAGAGTTTG 285
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 171 ATCGATCAGAAACTGCTGCTAAGTATCAATCAGGGCCTTATCTAGATTTGGAAGAGTTTG 230
Query 286 AAGAAGTTGACGACGATATAGCAGTGGAGTATCC-ATGCCCGTTTTGCGCAAGTGATTAT 344
|||||||| |||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 231 AAGAAGTT---GACGATATAGCAGTGGAGTA-CCAATGCCCGTTTTGCGCGAGTGATTAT 286
Query 345 GATTTAGTTGAATTGTGTCACCATATCGACGAAGAACATCGTCATGAAGCTAACAATGGG 404
|||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 287 GATTTAATTGAATTGTGTCACCATATCGACGAAGAACATCATCTTGAAGCTAACAATGGG 346
Query 405 ATATGTCCTGTATGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACAT 464
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ATATGTCCTGTTTGTAGCAAAAGGGTGAAGATGCATATGGTGGATCATATAACATCACAT 406
Query 465 CATAGAGATGTCTTGAAGAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTA 524
||| | | ||| | ||||||||||| ||||||||||||||||||| |
Sbjct 407 CAT----A------G-AGA-T------AAGGAAATGTCGTACAGGGAAGATCCATATTCA 448
Query 525 TCTGATAAATATCTTCAACCTCATCTTGATGAGTTGCCACCATCTATGAATCATCATCAG 584
|||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 449 TCTGATAAATATTTTCAACCTCCTCTTGATGAGTCGCCACCATCTATGACTCATCATCAT 508
Query 585 CATCCCTCTAA---ACATGTTTCCGATCAATTTTTATCGTTCATCAACAATTCTGCATTA 641
| | ||||||| ||||||||||||||||||||| |||||| |||||||||| |||
Sbjct 509 CGTACCTCTAATTTTGTTGTTTCCGATCAATTTTTATCATTCATCGACAATTCTGCGTTA 568
Query 642 CCAAATCAGACCAAGCTTGTGCTGCCTGATTCAAGTGTAGAAGACAAGAATCCGATTAAG 701
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||
Sbjct 569 CCAAATCAGACCAAGCTTGTGCAGCCTGATTCAAGTGTAGAAAACAAGAATCTGATTAAG 628
Query 702 GATTCGTCAGCAGCAAAAG-AGGGTACATCGTCGTGTCCTTTATCGGATAGTGATAAATT 760
||||||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 629 GATTCGTCAACAGCAAAAGAAGGG-ACATCGTCGTCTCCTTTATCGGATAGTGATAAATT 687
Query 761 GGAGAAGGCAAAGAAGTGTGAGTTTGTACAGGGACTGTTGTCATCAGCCATGTTTGATGA 820
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 688 GGAGAAGGCAAAGAAGTGTGAGTTTGTACAGGGACTATTGTCATCAGCCATGTTTGGTGA 747
Query 821 TGAATGTGACT-CTTCTGAGTAAAATAAAGATGTGAAGTCGCCAATGGGAAAGG-CAGGT 878
|||||| |||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 748 TGAATGCGACTTCTTCTGAGTAAAATAAAGATGTGAAGTCGCCAATGGGGAAGGGCAGGT 807
Query 879 GATTGTCATTGTTGTAATTTTATTCAGCTCTATTTATATATATGCATCTTTTTTACAGAC 938
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 808 GATTGTCATTGTTGTAATTT-ATTCAGCTCTATTTATATAT--GCATCTTTTTTACAGAC 864
Query 939 ATAACACTAGCTTTAGCCTTATAATATAAGCTGATGAGTTTTCAGTTTGTTTCTT 993
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 865 ATAACACTAGCTTTAGTCTTATAATATAAGCTGATGAGTTTTCAGTTTGTTTCTT 919
> Ahg490351 jgi|Araly1|490351|fgenesh2_kg.6__3485__AT4G02200.1
Length=1196
Score = 189 bits (102), Expect = 3e-47
Identities = 155/180 (86%), Gaps = 6/180 (3%)
Strand=Plus/Plus
Query 306 GCAGTGGAGTATCCATGCCCGTTTTGCGCAAG-TGATTATGATTTAGTTGAATTGTGTCA 364
|||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 186 GCAGTGGATTATCCATGCCCGTTTTGTTC-AGATGATTATGATTTAGTTGAATTGTGTCA 244
Query 365 CCATATCGACGAAGAACATCGTC-ATGAAGCTAACAATGGGATATGTCCTGTATGTAGCA 423
||||||||| || || |||| | | || |||||||||||||||||||| || |||||||
Sbjct 245 CCATATCGATGAGGAGCATCAACTA-GACGCTAACAATGGGATATGTCCGGTTTGTAGCA 303
Query 424 AAAGGGTGAAGATGCATATGGTGGATCATATAAC-ATCACATCATAGAGATGTCTTGAAG 482
| ||||||||||||||||||| ||||| || || | | || |||||||||||||| |||
Sbjct 304 GACGGGTGAAGATGCATATGGTTGATCACATTACCA-CGCAGCATAGAGATGTCTTCAAG 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37169844075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5