BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02770.1

Length=1218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925674 jgi|Araly1|925674|scaffold_201235.1                        113    3e-24


> Ahg925674 jgi|Araly1|925674|scaffold_201235.1
Length=942

 Score =  113 bits (61),  Expect = 3e-24
 Identities = 202/265 (76%), Gaps = 29/265 (11%)
 Strand=Plus/Plus

Query  248  ATCCTGATCCTGTATTGGTCAAGCTTTATGCTAG-TGCGGGGCTTCATCGCTACAATATG  306
            ||||||||| |   |||||||| | ||||||||| |  ||| |||||||| |||||||||
Sbjct  191  ATCCTGATCGTCCCTTGGTCAACCGTTATGCTAGAT-TGGGTCTTCATCGTTACAATATG  249

Query  307  TTGGAGGGGACGAACTTCAAGCTCG-TTGATGTAATGAAATTCAACAAGTTAATGATGCA  365
              ||||||||| |||||| |||||| ||| | |||| ||||||||||||     | ||||
Sbjct  250  AAGGAGGGGACAAACTTCGAGCTCGATTG-TCTAATCAAATTCAACAAG----CGGTGCA  304

Query  366  TT--TG--TCCCCTTTCTACATAACTTT-ACTTGCACAAGATCCAGTTAG--C-C-GTTC  416
            ||  ||  ||  ||| ||  ||||||||  | |||||  ||| ||||| |  | | || |
Sbjct  305  TTGGTGCTTCTTCTTACTGGATAACTTTGGC-TGCACGCGATACAGTT-GCCCGCAGTCC  362

Query  417  GCA-GCAAACCTTTCAGGTTCAAGTTGATGAACA-CT-GTCTTAGCACTAT-GGATTTGA  472
            | | |||||||||||||||||||||||||||| | |  | ||  |  || | ||||||||
Sbjct  363  G-ATGCAAACCTTTCAGGTTCAAGTTGATGAAAAGCGCG-CTC-GT-CTTTTGGATTTGA  418

Query  473  CG-GTTCTAATTGCTAGACCTAAAG  496
            || |||||| ||||||||  |||||
Sbjct  419  CGTGTTCTA-TTGCTAGAGTTAAAG  442



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45480639981


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5