BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02780.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1 1626 0.0
Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1 621 3e-177
Ahg479143 jgi|Araly1|479143|fgenesh2_kg.3__1844__AT3G16780.1 466 1e-130
> Ahg470235 jgi|Araly1|470235|fgenesh2_kg.1__189__AT1G02780.1
Length=966
Score = 1626 bits (880), Expect = 0.0
Identities = 939/967 (97%), Gaps = 6/967 (1%)
Strand=Plus/Plus
Query 1 ATATAAATTCTTTTCGTCTCGTTCGCTAATCAGTTCTCCGCCACACCAATCTCCAGAAAA 60
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATATAAATTCTTTTCGTCTGGTTCGCTAGTCAGTTCTCCGCCACACCAATCTCCAGAAAA 60
Query 61 GGGGAGAAGCAAAAATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GGGGAGAAGCAAAAATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTCATGA 120
Query 121 AGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAACGAAAGCTCCGACATCTCCATGGCCA 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAATGAAAGCTCCGACATCTCCATGGCCA 180
Query 181 ATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCA 240
Query 241 AGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACT 300
Query 301 CTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGA 360
Query 361 TGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGATTG 420
|||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 361 TGCGCAGGATGCGTGTTCTGAGGCGTCTGTTGAAGAAATACCGAGAGTCGAAGAAGATTG 420
Query 421 ACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGC 480
Query 481 GTGTCTTGATGGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGT 540
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 481 GTGTCTTGATGGAGAGTATCCACAAGTCTAAGGCTGAGAAGGCTAGAGAGAAGACTTTGT 540
Query 541 CTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTA 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 CTGATCAGTTTGAGGCTAAGAGGGCAAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTA 600
Query 601 GGAGAGAGGAGCGTTTAGCTAAGGGTCCCGGTGGAGATGTTGCGCCTGTAGCTGCTCCAG 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 601 GGAGAGAGGAGCGTTTAGCTAAGGGTCCCGGTGGAGATGCTGCGCCTGTAGCTGCACCAG 660
Query 661 CACCTGCTGCTACACCTGCTCCAACTGCAGCTGTACCGAAGAAGAAGTCTAAGAAGTGAA 720
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 661 CACCTGCTGCTACACCTGCTCAAACTGCAGATGTACCGAAGAAGAAGTCTAAGAAGTGAA 720
Query 721 GAG-G-ATATATAGTGTGAAGCTATATCGATCATCAGTTCACGGATTAGACTCTGAAGAA 778
||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAGAGGATATATAGTGACAAGCTATATCGATCATCAGTTCACGGATTAGACTCTGAAGAA 780
Query 779 GGTTTTGAATGTTTTATCGAATGCGTTTGTGGAATAACTTTTATTTTCGCAAAGAACATA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 781 GGTTTTGAATGTTTTATCGAATGCGTTTGTGGAATAACTTTTATTTTCGCAA-GAACATA 839
Query 839 ACTTATGTCAGTTAATCTTTATGCTTTCAGATTTTTAGCTTACAGTGTTTCAACAGACCT 898
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 ACTTATGTCAGTTAATCTTTATGCTTTCAGATTTTTAGTTTACAGTGTTTCAACAGACCT 899
Query 899 ACTTTGCAAG---TTGTTCtttttttGGTTTCTTATTGTTTTTCGTTCGTCATACGCAAT 955
|||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 900 ACTTTGCAAGAAGTTGTTCTTTTTTTGGTTTCTTATTGTTTTTCGTTCATCATACACAAT 959
Query 956 TACAAAA 962
|| ||||
Sbjct 960 TAAAAAA 966
> Ahg490348 jgi|Araly1|490348|fgenesh2_kg.6__3482__AT4G02230.1
Length=799
Score = 621 bits (336), Expect = 3e-177
Identities = 503/583 (86%), Gaps = 14/583 (2%)
Strand=Plus/Plus
Query 62 GGGAGAAGCAAAAATGGTTTC-TCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGA-TG 119
|||||| || ||||||||||| | |||||||||||||||| ||||| | ||||| | |
Sbjct 18 GGGAGAGGCTAAAATGGTTTCGT-TGAAGCTCCAGAAGCGTCTCGCATCCTCAGT-ACTC 75
Query 120 AAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAACGAAAGCTCCGACATCTCCATGGCC 179
|||||||||||| | ||||| ||||||||||| |||||| | || || |||||||||
Sbjct 76 AAGTGCGGGAAGAGAAAAGTATGGCTCGATCCGAACGAAGGAAGTGATATTTCCATGGCC 135
Query 180 AATTCCCGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACC 239
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 136 AATTCGCGCCAAAACATCAGGAAACTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACA 195
Query 240 AAGATTCACTCTCGTTCCAGAGCTCG-CAAAATGAAGATTGCCAAGATGAA-GGGTCGTC 297
||||| ||||| || ||||| || || ||| |||| || ||||||| ||| ||| ||||
Sbjct 196 AAGATACACTCACGATCCAGGGCACGTCAAT-TGAATATAGCCAAGA-GAAAGGGACGTC 253
Query 298 ACTCTGGATACGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGT 357
||||||| || |||||||||||||||||||| || || ||| |||| ||||||||| |||
Sbjct 254 ACTCTGGTTATGGTAAGAGGAAGGGTACCCGAGAGGCAAGGCTGCCGACAAAGGTATTGT 313
Query 358 GGATGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGA 417
||||| | |||||| | || || |||||||| |||||||| || || |||||||||||||
Sbjct 314 GGATGAGGAGGATGAGAGTGCTGAGGCGTCTTTTGAAGAAGTATAGGGAGACGAAGAAGA 373
Query 418 TTGACA-AGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAAC 476
|||||| | |||||||||||||||||||||||| || ||||| || || |||||||||
Sbjct 374 TTGACAGA-CACATGTACCATGACATGTACATGAAAGTCAAGGGAAACGTCTTCAAGAAC 432
Query 477 AAGCGTGTCTTGATGGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACT 536
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 433 AAGCGTGTCTTGATGGAAAGTATTCACAAGTCAAAGGCTGAGAAGGCTAGAGAGAAGACT 492
Query 537 CTGTCTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCAT 596
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 493 TTGTCTGACCAGTTTGAGGCTAAGAGGGCTAAGAACAAGGCTAGCCGAGAAAGGAAACAC 552
Query 597 GCTAGGA-GAGAGGAGCGT-TTAGCTAAGGGTCCCGGTGGAGA 637
||| | | ||||||||||| || ||||||||||| || |||||
Sbjct 553 GCTCG-ACGAGAGGAGCGTCTT-GCTAAGGGTCCTGGAGGAGA 593
> Ahg479143 jgi|Araly1|479143|fgenesh2_kg.3__1844__AT3G16780.1
Length=834
Score = 466 bits (252), Expect = 1e-130
Identities = 461/561 (82%), Gaps = 18/561 (3%)
Strand=Plus/Plus
Query 74 AATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGAAGTGCGGGAAGGG 133
|||||| || ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 42 AATGGTGTCGCTGAAGCTCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGG 101
Query 134 CAAAGTTTGGCTCGATCCCAACGAAAGCT-CCGACATCTCCATGGCCAATTCCCGCCAAA 192
|||||||||||||||||||| | || || ||| || || |||||||||||| | || |
Sbjct 102 AAAAGTTTGGCTCGATCCCAATG-AATCTGGCGATATTTCTATGGCCAATTCCAGGCAGA 160
Query 193 ACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTC 252
|||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 161 ACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCAC 220
Query 253 GTTC-CAGAGCTC-GCAAAATGAA-GATTGCCAAGATG-AAGGGTCGTCACTCTGGATAC 308
|||| | | || | | |||| || |||||| | |||||||||||||||||||||
Sbjct 221 GTTCTC-GTGC-CAGGGCTTTGAACGA-GGCCAAG-CGAAAGGGTCGTCACTCTGGATAC 276
Query 309 GGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGG 368
|||||||| |||||||| | || || ||| | ||||| ||| | || |||||| | ||
Sbjct 277 GGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGA 336
Query 369 ATGCGTGTTCTT-AGGCGTCTGTTGAAGAAA-TACAGAGAGACGAAGAAGATTGACAAGC 426
||| | || || |||||| | |||| | || ||| | ||| | ||||||||||| | ||
Sbjct 337 ATGAGGGTG-TTGAGGCGTTTCTTGA-GCAAGTACCGTGAGTCAAAGAAGATTGATAGGC 394
Query 427 ACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGT-C 485
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 395 ACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGC 454
Query 486 TTGATGGAGAGTATCCACAAG-TCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGA 544
|| |||||||||||||||||| | || |||||||||||| || |||||||| || |||||
Sbjct 455 TT-ATGGAGAGTATCCACAAGATGAA-GGCTGAGAAGGCCAGAGAGAAGACACTCTCTGA 512
Query 545 TCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAG 604
|| |||||||||||| | ||||||||||||||| | || || ||| ||| || ||
Sbjct 513 CCAATTTGAGGCTAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAG 572
Query 605 AGAGGAGCGTTTAGCTAAGGG 625
||||||| | |||||| ||||
Sbjct 573 AGAGGAGAGATTAGCTCAGGG 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5