BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02790.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918933 jgi|Araly1|918933|scaffold_100214.1 2292 0.0
> Ahg918933 jgi|Araly1|918933|scaffold_100214.1
Length=1356
Score = 2292 bits (1241), Expect = 0.0
Identities = 1320/1358 (97%), Gaps = 5/1358 (0%)
Strand=Plus/Plus
Query 35 TTAAATTTGTTAACACTCTTTTAAAAGAACaaaaaaagcaaaaaaaaaaTAAAGATATTA 94
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTAAATTTGTTAACACTCTTTTAAAAGAACAAAAAAAGCAAAAAAATAATAAAGATATTA 60
Query 95 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCAAGGCAAACAATATTAACGTAGGTTCAT 154
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCGAGGCAAACAATATTAACGTAGGTTCAT 120
Query 155 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 180
Query 215 GCCGTGGTCTCGCTGCTAATTCCGGTAACCCCACGGTCTATGATATTACTAAGTTTGGAG 274
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GCCGTGGTCTCGCCGCTAATTCCGGTAACCCCACAGTCTATGATATTACTAAGTTTGGAG 240
Query 275 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATACAAGTGT 334
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATCCAAGTGT 300
Query 335 GTGACAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGGAAC-ATTTTTGGCTGGTCCA 393
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 301 GTGATAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGG-ACAATTTTTGGCTGGTCCA 359
Query 394 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTT-ATAGGCACAATCAT 452
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 360 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTTCA-AGGCACAATCAT 418
Query 453 CGCTACGACCAGCGGGTACGCAACTCCCGAGTGGTTCTTGTTCGAGCGTGTTGACAATCT 512
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 419 CGCTACGACCAGCGGGTACGCAACTCCCGAATGGTTCTTGTTCGAACGTGTCGACAATCT 478
Query 513 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 538
Query 573 TTGTGGTAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 632
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGTGGCAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 598
Query 633 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 658
Query 693 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTACCGCACCAGCTGAAAGCCCCAA 752
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 659 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTATCGCACCTGCTGAAAGTCCCAA 718
Query 753 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATAGC 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATCGC 778
Query 813 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 838
Query 873 GATTTGTGGTCCAGGACACGGTCTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 932
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 GATTTGTGGTCCAGGACACGGTTTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 898
Query 933 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGATTGAGACCGACAATGGTCTTAG 992
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGGTTGAGACCGACAATGGTCTTAG 958
Query 993 GATCAAGACATGGGGTGGGTCAGACCCAAGCAAGGCTGTGGACATTAAGTTTGAAAACAT 1052
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 959 GATCAAGACATGGGGTGGTTCAGATCCAAGCAAGGCTGTGGACATTAAATTTGAAAACAT 1018
Query 1053 CATCATGCAGAGTGTCAAGAACCCAATCATCATTGATCAAAACTACGGTTCAAGAGGCGG 1112
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 CATCATGCAGAGTGTCAAGAACCCAATTATCATTGATCAAAACTACGGTTCAAGAGGCGG 1078
Query 1113 AGATTCACAAGTTGCTATAAGTGATATTTTGTTCAAGAACATTAGAGGAACAACAATTAC 1172
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 AGATTCACAAGTTGCTATAAGTGATATATTGTTCAAGAACATTAGAGGAACAACAATTAC 1138
Query 1173 AAAAGATGTTGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCCAAGGAGTAAACGTTGT 1232
||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1139 AAAAGATATCGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCAAAGGAGTCAACGTTGT 1198
Query 1233 TGACGTGAACTTGGACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCATCAGGCGG 1292
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1199 TGACGTGAACTTGAACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCGTCAGGCGG 1258
Query 1293 TTTGGTCGGAGCTCTTTGCGATAACGCCAATGTTATCTTCGGTGGAAAACTTAGTTTCCC 1352
|||||| |||||||||||||||||||| |||||||| || |||||||||||||| |||||
Sbjct 1259 TTTGGTGGGAGCTCTTTGCGATAACGCTAATGTTATATTTGGTGGAAAACTTAGCTTCCC 1318
Query 1353 TATGTGTCCCAAATAAGCTTTTTGGTATAAATAA-TTT 1389
||||||||||||||||||||||||||||||| || |||
Sbjct 1319 TATGTGTCCCAAATAAGCTTTTTGGTATAAAAAAATTT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5