BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02790.1 Length=1658 Score E Sequences producing significant alignments: (Bits) Value Ahg918933 jgi|Araly1|918933|scaffold_100214.1 2292 0.0 > Ahg918933 jgi|Araly1|918933|scaffold_100214.1 Length=1356 Score = 2292 bits (1241), Expect = 0.0 Identities = 1320/1358 (97%), Gaps = 5/1358 (0%) Strand=Plus/Plus Query 35 TTAAATTTGTTAACACTCTTTTAAAAGAACaaaaaaagcaaaaaaaaaaTAAAGATATTA 94 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 TTAAATTTGTTAACACTCTTTTAAAAGAACAAAAAAAGCAAAAAAATAATAAAGATATTA 60 Query 95 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCAAGGCAAACAATATTAACGTAGGTTCAT 154 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TCACCATGGCTAACGCAAGAAGTTTGGTCGCCGAGGCAAACAATATTAACGTAGGTTCAT 120 Query 155 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGATTCTAATGGCCTTGGTGTTTGGTTCTTGCGTGGCTAATGGTGAATATCTCGGCGGCC 180 Query 215 GCCGTGGTCTCGCTGCTAATTCCGGTAACCCCACGGTCTATGATATTACTAAGTTTGGAG 274 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 GCCGTGGTCTCGCCGCTAATTCCGGTAACCCCACAGTCTATGATATTACTAAGTTTGGAG 240 Query 275 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATACAAGTGT 334 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 CCGTAGGAGATGGTTCCACCAATACTTTTAAGGCGTTTTTGAACACATGGATCCAAGTGT 300 Query 335 GTGACAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGGAAC-ATTTTTGGCTGGTCCA 393 |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 301 GTGATAGTCCAGTACCAGCAACGCTACTAGTTCCTAAGGG-ACAATTTTTGGCTGGTCCA 359 Query 394 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTT-ATAGGCACAATCAT 452 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 360 GTCATTTTCGCCGGTCCATGCAAGAGCAAAGTGACCGTCAATGTTCA-AGGCACAATCAT 418 Query 453 CGCTACGACCAGCGGGTACGCAACTCCCGAGTGGTTCTTGTTCGAGCGTGTTGACAATCT 512 |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| Sbjct 419 CGCTACGACCAGCGGGTACGCAACTCCCGAATGGTTCTTGTTCGAACGTGTCGACAATCT 478 Query 513 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CGTCCTCACCGGAACCGGCACATTCCACGGGAAAGGTGAAGCTGTCTGGAAAGCAGATGG 538 Query 573 TTGTGGTAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 632 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TTGTGGCAAAAAGGTCCAATGCAATCTTCCTCCAACGTCTCTCAAATTCAGGAACATGAA 598 Query 633 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 692 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AAATGTTGAAATCAATGGCATAAGCTCGGTGAACGCAAAGGCCTTCCACATGTTCTTAGT 658 Query 693 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTACCGCACCAGCTGAAAGCCCCAA 752 |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| Sbjct 659 CAAAACTGAGAATGTTAACATCCAAAACATTAAGCTTATCGCACCTGCTGAAAGTCCCAA 718 Query 753 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATAGC 812 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 719 CACCGATGGTATCCATTTGAGCAATGCAGACAACGTTAGCATCCTCGACAGTACCATCGC 778 Query 813 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GACTGGAGACGATTGTGTTTCAGTCGGTCGTGGCTCCAACAACGTAACCGTCGAACGTGT 838 Query 873 GATTTGTGGTCCAGGACACGGTCTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 932 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 839 GATTTGTGGTCCAGGACACGGTTTAAGTGTCGGTAGTCTTGGTAAGTACAAGAACGAGGA 898 Query 933 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGATTGAGACCGACAATGGTCTTAG 992 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 899 AGACGTTAGCGGAATCCACGTTAACAACTGCACGATGGTTGAGACCGACAATGGTCTTAG 958 Query 993 GATCAAGACATGGGGTGGGTCAGACCCAAGCAAGGCTGTGGACATTAAGTTTGAAAACAT 1052 |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| Sbjct 959 GATCAAGACATGGGGTGGTTCAGATCCAAGCAAGGCTGTGGACATTAAATTTGAAAACAT 1018 Query 1053 CATCATGCAGAGTGTCAAGAACCCAATCATCATTGATCAAAACTACGGTTCAAGAGGCGG 1112 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1019 CATCATGCAGAGTGTCAAGAACCCAATTATCATTGATCAAAACTACGGTTCAAGAGGCGG 1078 Query 1113 AGATTCACAAGTTGCTATAAGTGATATTTTGTTCAAGAACATTAGAGGAACAACAATTAC 1172 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1079 AGATTCACAAGTTGCTATAAGTGATATATTGTTCAAGAACATTAGAGGAACAACAATTAC 1138 Query 1173 AAAAGATGTTGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCCAAGGAGTAAACGTTGT 1232 ||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1139 AAAAGATATCGTTCAGATTATGTGTAGCAAATCGGTGCCGTGCAAAGGAGTCAACGTTGT 1198 Query 1233 TGACGTGAACTTGGACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCATCAGGCGG 1292 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1199 TGACGTGAACTTGAACTATGTAGGCAAGACAGGAGGAGAGAAGAAGTCGTCGTCAGGCGG 1258 Query 1293 TTTGGTCGGAGCTCTTTGCGATAACGCCAATGTTATCTTCGGTGGAAAACTTAGTTTCCC 1352 |||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||||| Sbjct 1259 TTTGGTGGGAGCTCTTTGCGATAACGCTAATGTTATATTTGGTGGAAAACTTAGCTTCCC 1318 Query 1353 TATGTGTCCCAAATAAGCTTTTTGGTATAAATAA-TTT 1389 ||||||||||||||||||||||||||||||| || ||| Sbjct 1319 TATGTGTCCCAAATAAGCTTTTTGGTATAAAAAAATTT 1356 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62163279840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5