BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02800.1
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918934 jgi|Araly1|918934|scaffold_100215.1 2512 0.0
Ahg490341 jgi|Araly1|490341|fgenesh2_kg.6__3475__AT4G02290.1 1323 0.0
> Ahg918934 jgi|Araly1|918934|scaffold_100215.1
Length=1547
Score = 2512 bits (1360), Expect = 0.0
Identities = 1470/1524 (96%), Gaps = 4/1524 (0%)
Strand=Plus/Plus
Query 81 ctagagaaatggctctctatctctcttcttcacgactcatcacctttctctc-tttcatc 139
|||||||||||||||||||||||| |||||| |||||||||| || |||||| |||| ||
Sbjct 14 CTAGAGAAATGGCTCTCTATCTCTATTCTTCTCGACTCATCATCTGTCTCTCTTTTC-TC 72
Query 140 ttgcttctctccaatggcttctcGTCCTCTTCCTCTCGCCCTAGCATCCACCATCGTCAC 199
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 73 TTGCTTATCACCAATGGCTTCTCGTCCTCTTCCTCTCGCTCTAGCATCCACCATCGTCAC 132
Query 200 CACCTGGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATTCTCTTCTTCGAAGGT 259
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CACCTCGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATTCTCTTCTTCGAAGGT 192
Query 260 CAAAGATCCGGAAAGCTTCCTCCAAACCAGAGAATGACTTGGAGAAGCAACTCTGGTCTC 319
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 193 CAAAGATCCGGAAAGCTTCCTCCAAACCAGAGGATGACTTGGAGAAGTAACTCTGGCCTC 252
Query 320 TCTGATGGCTCTGCTCTCAACGTGGATTTGGTGGGAGGATACTACGATGCAGGGGACAAT 379
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 TCTGATGGTTCTGCCCTCAACGTGGATTTGGTGGGAGGATACTACGATGCAGGGGACAAT 312
Query 380 ATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTCTCATGGAGTTTAATTGAG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 ATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTCTCATGGAGTTTAATTGAG 372
Query 440 TTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCAAAAGACGCTA-TTCGTTGGGCTAC 498
||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||
Sbjct 373 TTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCTAAAGACGC-AGTTCGTTGGGCCAC 431
Query 499 TGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGGTTGGTGATCC 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGGTTGGTGATCC 491
Query 559 TAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTT 618
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 492 TAACATGGACCATGCGTGTTGGGAGAGACCAGAAGACATGGATACACCAAGAAGTGTGTT 551
Query 619 TAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGTGAAATCGCCGCCGCTCTTGC 678
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 552 TAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGTGAAATCGCTGCCGCTCTTGC 611
Query 679 CGCTGCTTCAATTGTTTTCAGAAAATGTGATCCTTCTTACTCCAATCACCTCCTCCAACG 738
||||||||||||||||||| | | ||| ||||||||||||||||||| ||||||||||||
Sbjct 612 CGCTGCTTCAATTGTTTTCGGGAGATGCGATCCTTCTTACTCCAATCTCCTCCTCCAACG 671
Query 739 AGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGC 731
Query 799 CCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATATCAGGATGAATTGTTATGGGG 858
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 732 CCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGCTACCAGGACGAATTGTTATGGGG 791
Query 859 AGCTGCTTGGTTACAAAAAGCAACAAATAACCCAACATATCTCAATTACATCAAAGCTAA 918
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 AGCTGCTTGGTTACACAAAGCAACAAATAACCCAACATATCTCAATTACATCAAAGCTAA 851
Query 919 TGGACAAATCCTTGGAGCTGATGAGTTTGATAACATGTTTAGTTGGGATAATAAGCACGT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TGGACAAATCCTTGGAGCTGATGAGTTTGATAACATGTTTAGTTGGGATAATAAGCACGT 911
Query 979 TGGTGCTAGAATCCTTCTCTCCAAGGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGA 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGGTGCTAGAATCCTTCTCTCCAAGGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGA 971
Query 1039 ATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTCTACCTGGAGCATCCTCTTCCCA 1098
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 972 ATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTTTACCTGGAGCCTCCTCTTCCCA 1031
Query 1099 ATATACACCAGGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTC 1158
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1032 ATACACCCCAGGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACATC 1091
Query 1159 TACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCACCGTCGCTTA 1218
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1092 TACATCGTTCTTGCTCTTGACCTACGCCAAATATTTAACCTCTGCTCGCACTGTCGCTTA 1151
Query 1219 TTGCGGTGGCTCCGTCGTCACCCCTGCCCGCCTCCGCTCCATCGCAAAGAAACAGGTGGA 1278
||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1152 TTGCGGTGGTTCCGTCGTCACCCCTGCCCGCCTCCGCTCCATCGCTAGGAAACAGGTGGA 1211
Query 1279 TTATCTACTTGGAGGCAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTGAAATA 1338
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1212 TTATCTACTTGGAGACAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTTAAATA 1271
Query 1339 TCCACGTCGGATTCACCACCGTGGCTCATCTCTCCCCTCCGTTGCAGTCCACCCGACCAG 1398
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TCCACGTCGGATTCACCAACGTGGCTCATCTCTCCCCTCCGTTGCAGTCCACCCGACCAG 1331
Query 1399 GATCCAGTGCCACGACGGCTTCTCCTTGTTTACCTCTCAATCTCCTAATCCTAACGACCT 1458
||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 1332 GATCCAGTGCCACGATGGCTTCTCCATGTTTACCTCTCAATCTCCTAACCCTAACGACTT 1391
Query 1459 AGTCGGTGCAGTAGTCGGTGGTCCGGACCAGAACGATCAATTCCCTGACGAACGGTCCGA 1518
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1392 AGTCGGTGCAGTCGTCGGTGGTCCCGACCAGAACGACCAATTCCCTGACGAACGGTCCGA 1451
Query 1519 CTACGGACGGTCAGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCTTTGGCTTA 1578
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 CTATGGACGGTCCGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCTTTGGCTTG 1511
Query 1579 TCTTGCTCGATCCTAAGGCCAACT 1602
||||||||||||||||||||||||
Sbjct 1512 TCTTGCTCGATCCTAAGGCCAACT 1535
> Ahg490341 jgi|Araly1|490341|fgenesh2_kg.6__3475__AT4G02290.1
Length=1905
Score = 1323 bits (716), Expect = 0.0
Identities = 1300/1571 (83%), Gaps = 84/1571 (5%)
Strand=Plus/Plus
Query 83 agagaaatgg--c-tc-tcta-tctc-tctt-cttcacgactcatcaccttt-ctctctt 134
|||||||||| | || |||| | || |||| ||||| || ||| || ||| || ||||
Sbjct 107 AGAGAAATGGCTCTTCTTCTATTTTCTTCTTCCTTCA-GAGTCACCA-TTTTCCTGTCTT 164
Query 135 tcatcttgc-ttctctccaatggcttctcGT--CCT-CTTC--CTC---TC-GCCCTAGC 184
|| |||| | |||||| |||||||||||| | ||| |||| ||| || | | | |
Sbjct 165 TCTTCTT-CTTTCTCTGCAATGGCTTCTCTTACCCTACTTCTTCTCTTTTCAACAC-A-C 221
Query 185 ATCCACCATCGTCACCACCTGGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATT 244
|| ||||||||||||||| ||| ||| ||||| ||||||||||||||| |||| || ||
Sbjct 222 AT-CACCATCGTCACCACTTGGCCAAGCACAACTACAAAGACGCTCTCACCAAATCAATC 280
Query 245 CTCTTCTTCGAAGGTCAAAGATC-CGGAAAGCTTCCTCCAAACCAGAGAATGACTTGGAG 303
|||||||| ||||| ||||| || ||||| |||||| | ||||||||||||| ||||||
Sbjct 281 CTCTTCTTTGAAGGCCAAAGGTCTGGGAAA-CTTCCTTCTAACCAGAGAATGAGTTGGAG 339
Query 304 AAGCA-ACTCTGGTCTCTCTGATGGCTCTGCTC-TCAACGTGGATTTGGTGGGAGGATAC 361
|| | ||||||||||||||||||||||||||| || | ||||||||||| |||||||||
Sbjct 340 AA-AAGACTCTGGTCTCTCTGATGGCTCTGCTCTTC-ATGTGGATTTGGTTGGAGGATAC 397
Query 362 TACGATGCAGGGGACAATATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTC 421
|| |||||||| ||||| || || ||||||||||||||||||||||||||||||||| |
Sbjct 398 TATGATGCAGGAGACAACATCAAATTTGGATTCCCAATGGCATTCACAACCACAATGTTA 457
Query 422 TCATGGAGTTTAATTGAGTTTGGTGGTCTCATGAAATCTGAGTTACCAAACGC-AAAAGA 480
||||||||| |||| || ||||||||||||||||||||||| |||| |||||| |||| |
Sbjct 458 TCATGGAGTGTAATCGAATTTGGTGGTCTCATGAAATCTGAATTACAAAACGCTAAAATA 517
Query 481 CGCTATTCGTTGGGCTACTGACTT-TCTCCTCAAAGCCACTTCACA-TCCTGATACCATT 538
|| ||||||||||||||||| || ||| ||||||||||||||| | |||||||||||||
Sbjct 518 -GCGATTCGTTGGGCTACTGA-TTATCTTCTCAAAGCCACTTCA-AGTCCTGATACCATT 574
Query 539 TATGTTCAGGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG 598
|||||||| ||||||||| |||| | |||||| |||||||||| |||||||||||||||
Sbjct 575 TATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCAGAAGACATG 634
Query 599 GACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGT 658
|| || |||||||||||||||||| |||||||||| ||||||||||||| |||||| |
Sbjct 635 GATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACACTCCTGGTTCTGATGTCGCCGCT 694
Query 659 GAAATCGCCGCCGCTCTTGCCGCTGCTTCAATTGTTTTCAGAAAATGTGATCCTTCTTAC 718
|||| |||||||||||| ||||| || | |||||||||||||| | |||||||||||||
Sbjct 695 GAAACCGCCGCCGCTCTAGCCGCAGCCGCTATTGTTTTCAGAAAGTCTGATCCTTCTTAC 754
Query 719 TCCAATCACCTCCTCCAACGAGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGA 778
||||| ||||||| |||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 755 TCCAAAGTCCTCCTCAAACGAGCCATCAGGGTTTTTGCATTTGCGGACAAATACAGAGGA 814
Query 779 CCCTACAGTGCAGG-TCTGGCCCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATA 837
| || |||||||| | || || || ||||||||||| || || ||||||||||| ||
Sbjct 815 ACTTATAGTGCAGGAT-TGAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTA 873
Query 838 TCAGGATGAATTGTTATGGGGAGCTGCTTGGTTACAAAAAGCAACAAATAACCCAACATA 897
||||||||||||||| |||||||||||||||||||||||||| ||||| || || |||
Sbjct 874 TCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCCACAAAGAATTTAAAATA 933
Query 898 TCTCAATTACATCAAAGCTAATGGACAAATCCTTGGAGCTGATGAGTTTGATAACA-TGT 956
| | |||||||| ||| ||||||||||||||||||||||| ||| | |||||||| | |
Sbjct 934 TTTGAATTACATAAAAATTAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACT-T 992
Query 957 TTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCCAA-GG-AGTTTCTGAT 1014
|| |||||||||| ||||||| ||| || ||||| ||||| | ||| || | ||| || |
Sbjct 993 TTGGTTGGGATAACAAGCACGCTGGAGCCAGAATTCTTCT-TACAAAGGCATTTT-TGGT 1050
Query 1015 TCAGAAAGTGAAGTCACTTGAAGAATACAAAGAG-CATGCTGATAGTTTCATTTGCTCTG 1073
|||||| |||||| ||||| | || ||||||| | |||||||||| ||||||||||||||
Sbjct 1051 TCAGAATGTGAAGACACTTCATGAGTACAAAG-GTCATGCTGATAATTTCATTTGCTCTG 1109
Query 1074 TTCTACCTGGAGCATCCTCTTC-C--CAA-T-A-TACACC--AGGTGGGCTATTGTTCAA 1125
|| | |||||||| |||| ||| | | | | | |||||| |||||| ||||||| ||
Sbjct 1110 TTATTCCTGGAGC-TCCT-TTCTCTTCTACTCAGTACACCCCAGGTGGATTATTGTTTAA 1167
Query 1126 GATGGGTGAGAGC-AACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACG 1184
|||| || || ||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 1168 AATGGCAGAC-GCCAACATGCAATATGTGACGTCAACATCGTTCTTGCTCTTAACCTACG 1226
Query 1185 CCAAATACTTAACCTCTGCTCGCACC-GTCG-CTTATTGCGGTGGCTCCGTCGT-CAC-C 1240
|||||||||||||||| || | | | |||| | ||||||||||||||||| | ||| |
Sbjct 1227 CCAAATACTTAACCTCCGC-CAAAACAGTCGTCC-ATTGCGGTGGCTCCGTC-TACACTC 1283
Query 1241 CCTGCCCGCCTCCGCTCCATCGCAAAGAA-ACAGGTGGATTATCTACTTGGAGGCAACCC 1299
|| | | |||||||||||||||| || || ||||||||||||||||||||||| ||||||
Sbjct 1284 CCGGTC-GCCTCCGCTCCATCGCCAA-AAGACAGGTGGATTATCTACTTGGAGACAACCC 1341
Query 1300 GTTGAAGA-TGTCATACATGGTTGGTTATGGTCTGAAATATCC-ACGTCGGATTCACCAC 1357
|| |||| |||| |||||||||||||| |||| ||||| ||| ||| || || ||||||
Sbjct 1342 ATT-AAGAATGTCTTACATGGTTGGTTACGGTCCGAAAT-TCCCACGGCGAATCCACCAC 1399
Query 1358 CGTGGCTCATCTCTCCCCTCCGTTGCA-GTCCACCCGACCAGGATCCAGTGCCACGACGG 1416
|||||||| ||| | || | |||||| | ||||||| ||| |||||| |||||| | ||
Sbjct 1400 CGTGGCTCCTCTTTACCTTGTGTTGCAAG-CCACCCGGCCAAGATCCAATGCCACCAAGG 1458
Query 1417 CTTCTCCT-TGTTTACCTCTCAATCTCCTAATCCTAACGACCTAGTCGGTGCAGTAGTCG 1475
||| | | | | | |||||||||||| || |||||| ||| || |||||||| || |
Sbjct 1459 CTT-TGCAATCATGAACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTG 1517
Query 1476 GTGGTCCGGACCAGAACGATCAATTCCCTGACGAACGGTCCGACTACG-GACGGTCAGAG 1534
|||||||||||||| | |||| ||||| |||||||||||||| |||| | | ||| |||
Sbjct 1518 GTGGTCCGGACCAGCATGATCGCTTCCCGGACGAACGGTCCGATTACGAG-CAGTCCGAG 1576
Query 1535 CCAGCAACTTACATTAACGCTCCACTTGTTGGAGCT-TTGGCTTATCTT-GCTCGAT-CC 1591
|| || |||||||| || || ||||| ||||||||| ||| || | ||| |||| | ||
Sbjct 1577 CCGGCTACTTACATCAATGCACCACTCGTTGGAGCTCTTGCCT-A-CTTCGCTC-ACGCC 1633
Query 1592 TAAGGCCAACT 1602
|| || |||||
Sbjct 1634 TATGGTCAACT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66200845810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5