BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02800.1 Length=1764 Score E Sequences producing significant alignments: (Bits) Value Ahg918934 jgi|Araly1|918934|scaffold_100215.1 2512 0.0 Ahg490341 jgi|Araly1|490341|fgenesh2_kg.6__3475__AT4G02290.1 1323 0.0 > Ahg918934 jgi|Araly1|918934|scaffold_100215.1 Length=1547 Score = 2512 bits (1360), Expect = 0.0 Identities = 1470/1524 (96%), Gaps = 4/1524 (0%) Strand=Plus/Plus Query 81 ctagagaaatggctctctatctctcttcttcacgactcatcacctttctctc-tttcatc 139 |||||||||||||||||||||||| |||||| |||||||||| || |||||| |||| || Sbjct 14 CTAGAGAAATGGCTCTCTATCTCTATTCTTCTCGACTCATCATCTGTCTCTCTTTTC-TC 72 Query 140 ttgcttctctccaatggcttctcGTCCTCTTCCTCTCGCCCTAGCATCCACCATCGTCAC 199 |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 73 TTGCTTATCACCAATGGCTTCTCGTCCTCTTCCTCTCGCTCTAGCATCCACCATCGTCAC 132 Query 200 CACCTGGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATTCTCTTCTTCGAAGGT 259 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 CACCTCGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATTCTCTTCTTCGAAGGT 192 Query 260 CAAAGATCCGGAAAGCTTCCTCCAAACCAGAGAATGACTTGGAGAAGCAACTCTGGTCTC 319 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 193 CAAAGATCCGGAAAGCTTCCTCCAAACCAGAGGATGACTTGGAGAAGTAACTCTGGCCTC 252 Query 320 TCTGATGGCTCTGCTCTCAACGTGGATTTGGTGGGAGGATACTACGATGCAGGGGACAAT 379 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 253 TCTGATGGTTCTGCCCTCAACGTGGATTTGGTGGGAGGATACTACGATGCAGGGGACAAT 312 Query 380 ATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTCTCATGGAGTTTAATTGAG 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 313 ATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTCTCATGGAGTTTAATTGAG 372 Query 440 TTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCAAAAGACGCTA-TTCGTTGGGCTAC 498 ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| || Sbjct 373 TTTGGTGGTCTCATGAAATCTGAGTTACCAAACGCTAAAGACGC-AGTTCGTTGGGCCAC 431 Query 499 TGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGGTTGGTGATCC 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 TGACTTTCTCCTCAAAGCCACTTCACATCCTGATACCATTTATGTTCAGGTTGGTGATCC 491 Query 559 TAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTT 618 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 492 TAACATGGACCATGCGTGTTGGGAGAGACCAGAAGACATGGATACACCAAGAAGTGTGTT 551 Query 619 TAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGTGAAATCGCCGCCGCTCTTGC 678 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 552 TAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGTGAAATCGCTGCCGCTCTTGC 611 Query 679 CGCTGCTTCAATTGTTTTCAGAAAATGTGATCCTTCTTACTCCAATCACCTCCTCCAACG 738 ||||||||||||||||||| | | ||| ||||||||||||||||||| |||||||||||| Sbjct 612 CGCTGCTTCAATTGTTTTCGGGAGATGCGATCCTTCTTACTCCAATCTCCTCCTCCAACG 671 Query 739 AGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGC 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 AGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGC 731 Query 799 CCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATATCAGGATGAATTGTTATGGGG 858 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 732 CCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGCTACCAGGACGAATTGTTATGGGG 791 Query 859 AGCTGCTTGGTTACAAAAAGCAACAAATAACCCAACATATCTCAATTACATCAAAGCTAA 918 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 AGCTGCTTGGTTACACAAAGCAACAAATAACCCAACATATCTCAATTACATCAAAGCTAA 851 Query 919 TGGACAAATCCTTGGAGCTGATGAGTTTGATAACATGTTTAGTTGGGATAATAAGCACGT 978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 852 TGGACAAATCCTTGGAGCTGATGAGTTTGATAACATGTTTAGTTGGGATAATAAGCACGT 911 Query 979 TGGTGCTAGAATCCTTCTCTCCAAGGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGA 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 912 TGGTGCTAGAATCCTTCTCTCCAAGGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGA 971 Query 1039 ATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTCTACCTGGAGCATCCTCTTCCCA 1098 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 972 ATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTTTACCTGGAGCCTCCTCTTCCCA 1031 Query 1099 ATATACACCAGGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACGTC 1158 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1032 ATACACCCCAGGTGGGCTATTGTTCAAGATGGGTGAGAGCAACATGCAATACGTGACATC 1091 Query 1159 TACATCGTTCTTGCTCTTGACCTACGCCAAATACTTAACCTCTGCTCGCACCGTCGCTTA 1218 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1092 TACATCGTTCTTGCTCTTGACCTACGCCAAATATTTAACCTCTGCTCGCACTGTCGCTTA 1151 Query 1219 TTGCGGTGGCTCCGTCGTCACCCCTGCCCGCCTCCGCTCCATCGCAAAGAAACAGGTGGA 1278 ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1152 TTGCGGTGGTTCCGTCGTCACCCCTGCCCGCCTCCGCTCCATCGCTAGGAAACAGGTGGA 1211 Query 1279 TTATCTACTTGGAGGCAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTGAAATA 1338 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1212 TTATCTACTTGGAGACAACCCGTTGAAGATGTCATACATGGTTGGTTATGGTCTTAAATA 1271 Query 1339 TCCACGTCGGATTCACCACCGTGGCTCATCTCTCCCCTCCGTTGCAGTCCACCCGACCAG 1398 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1272 TCCACGTCGGATTCACCAACGTGGCTCATCTCTCCCCTCCGTTGCAGTCCACCCGACCAG 1331 Query 1399 GATCCAGTGCCACGACGGCTTCTCCTTGTTTACCTCTCAATCTCCTAATCCTAACGACCT 1458 ||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 1332 GATCCAGTGCCACGATGGCTTCTCCATGTTTACCTCTCAATCTCCTAACCCTAACGACTT 1391 Query 1459 AGTCGGTGCAGTAGTCGGTGGTCCGGACCAGAACGATCAATTCCCTGACGAACGGTCCGA 1518 |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1392 AGTCGGTGCAGTCGTCGGTGGTCCCGACCAGAACGACCAATTCCCTGACGAACGGTCCGA 1451 Query 1519 CTACGGACGGTCAGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCTTTGGCTTA 1578 ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1452 CTATGGACGGTCCGAGCCAGCAACTTACATTAACGCTCCACTTGTTGGAGCTTTGGCTTG 1511 Query 1579 TCTTGCTCGATCCTAAGGCCAACT 1602 |||||||||||||||||||||||| Sbjct 1512 TCTTGCTCGATCCTAAGGCCAACT 1535 > Ahg490341 jgi|Araly1|490341|fgenesh2_kg.6__3475__AT4G02290.1 Length=1905 Score = 1323 bits (716), Expect = 0.0 Identities = 1300/1571 (83%), Gaps = 84/1571 (5%) Strand=Plus/Plus Query 83 agagaaatgg--c-tc-tcta-tctc-tctt-cttcacgactcatcaccttt-ctctctt 134 |||||||||| | || |||| | || |||| ||||| || ||| || ||| || |||| Sbjct 107 AGAGAAATGGCTCTTCTTCTATTTTCTTCTTCCTTCA-GAGTCACCA-TTTTCCTGTCTT 164 Query 135 tcatcttgc-ttctctccaatggcttctcGT--CCT-CTTC--CTC---TC-GCCCTAGC 184 || |||| | |||||| |||||||||||| | ||| |||| ||| || | | | | Sbjct 165 TCTTCTT-CTTTCTCTGCAATGGCTTCTCTTACCCTACTTCTTCTCTTTTCAACAC-A-C 221 Query 185 ATCCACCATCGTCACCACCTGGACAACCACAATTACAAAGACGCTCTCTCCAAGTCCATT 244 || ||||||||||||||| ||| ||| ||||| ||||||||||||||| |||| || || Sbjct 222 AT-CACCATCGTCACCACTTGGCCAAGCACAACTACAAAGACGCTCTCACCAAATCAATC 280 Query 245 CTCTTCTTCGAAGGTCAAAGATC-CGGAAAGCTTCCTCCAAACCAGAGAATGACTTGGAG 303 |||||||| ||||| ||||| || ||||| |||||| | ||||||||||||| |||||| Sbjct 281 CTCTTCTTTGAAGGCCAAAGGTCTGGGAAA-CTTCCTTCTAACCAGAGAATGAGTTGGAG 339 Query 304 AAGCA-ACTCTGGTCTCTCTGATGGCTCTGCTC-TCAACGTGGATTTGGTGGGAGGATAC 361 || | ||||||||||||||||||||||||||| || | ||||||||||| ||||||||| Sbjct 340 AA-AAGACTCTGGTCTCTCTGATGGCTCTGCTCTTC-ATGTGGATTTGGTTGGAGGATAC 397 Query 362 TACGATGCAGGGGACAATATGAAGTTTGGATTCCCAATGGCATTCACAACCACAATGCTC 421 || |||||||| ||||| || || ||||||||||||||||||||||||||||||||| | Sbjct 398 TATGATGCAGGAGACAACATCAAATTTGGATTCCCAATGGCATTCACAACCACAATGTTA 457 Query 422 TCATGGAGTTTAATTGAGTTTGGTGGTCTCATGAAATCTGAGTTACCAAACGC-AAAAGA 480 ||||||||| |||| || ||||||||||||||||||||||| |||| |||||| |||| | Sbjct 458 TCATGGAGTGTAATCGAATTTGGTGGTCTCATGAAATCTGAATTACAAAACGCTAAAATA 517 Query 481 CGCTATTCGTTGGGCTACTGACTT-TCTCCTCAAAGCCACTTCACA-TCCTGATACCATT 538 || ||||||||||||||||| || ||| ||||||||||||||| | ||||||||||||| Sbjct 518 -GCGATTCGTTGGGCTACTGA-TTATCTTCTCAAAGCCACTTCA-AGTCCTGATACCATT 574 Query 539 TATGTTCAGGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATG 598 |||||||| ||||||||| |||| | |||||| |||||||||| ||||||||||||||| Sbjct 575 TATGTTCAAGTTGGTGATGCTAATAAAGACCATTCTTGTTGGGAAAGACCAGAAGACATG 634 Query 599 GACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTGATATCGCCGGT 658 || || |||||||||||||||||| |||||||||| ||||||||||||| |||||| | Sbjct 635 GATACTGTAAGAAGTGTGTTTAAAGTTGACAAGAACACTCCTGGTTCTGATGTCGCCGCT 694 Query 659 GAAATCGCCGCCGCTCTTGCCGCTGCTTCAATTGTTTTCAGAAAATGTGATCCTTCTTAC 718 |||| |||||||||||| ||||| || | |||||||||||||| | ||||||||||||| Sbjct 695 GAAACCGCCGCCGCTCTAGCCGCAGCCGCTATTGTTTTCAGAAAGTCTGATCCTTCTTAC 754 Query 719 TCCAATCACCTCCTCCAACGAGCCATTACGGTTTTTACATTTGCGGACAAATACAGAGGA 778 ||||| ||||||| |||||||||| | ||||||| ||||||||||||||||||||||| Sbjct 755 TCCAAAGTCCTCCTCAAACGAGCCATCAGGGTTTTTGCATTTGCGGACAAATACAGAGGA 814 Query 779 CCCTACAGTGCAGG-TCTGGCCCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATA 837 | || |||||||| | || || || ||||||||||| || || ||||||||||| || Sbjct 815 ACTTATAGTGCAGGAT-TGAAACCTGATGTTTGTCCATTTTATTGCTCTTACTCTGGTTA 873 Query 838 TCAGGATGAATTGTTATGGGGAGCTGCTTGGTTACAAAAAGCAACAAATAACCCAACATA 897 ||||||||||||||| |||||||||||||||||||||||||| ||||| || || ||| Sbjct 874 TCAGGATGAATTGTTGTGGGGAGCTGCTTGGTTACAAAAAGCCACAAAGAATTTAAAATA 933 Query 898 TCTCAATTACATCAAAGCTAATGGACAAATCCTTGGAGCTGATGAGTTTGATAACA-TGT 956 | | |||||||| ||| ||||||||||||||||||||||| ||| | |||||||| | | Sbjct 934 TTTGAATTACATAAAAATTAATGGACAAATCCTTGGAGCTGCTGAATATGATAACACT-T 992 Query 957 TTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCCAA-GG-AGTTTCTGAT 1014 || |||||||||| ||||||| ||| || ||||| ||||| | ||| || | ||| || | Sbjct 993 TTGGTTGGGATAACAAGCACGCTGGAGCCAGAATTCTTCT-TACAAAGGCATTTT-TGGT 1050 Query 1015 TCAGAAAGTGAAGTCACTTGAAGAATACAAAGAG-CATGCTGATAGTTTCATTTGCTCTG 1073 |||||| |||||| ||||| | || ||||||| | |||||||||| |||||||||||||| Sbjct 1051 TCAGAATGTGAAGACACTTCATGAGTACAAAG-GTCATGCTGATAATTTCATTTGCTCTG 1109 Query 1074 TTCTACCTGGAGCATCCTCTTC-C--CAA-T-A-TACACC--AGGTGGGCTATTGTTCAA 1125 || | |||||||| |||| ||| | | | | | |||||| |||||| ||||||| || Sbjct 1110 TTATTCCTGGAGC-TCCT-TTCTCTTCTACTCAGTACACCCCAGGTGGATTATTGTTTAA 1167 Query 1126 GATGGGTGAGAGC-AACATGCAATACGTGACGTCTACATCGTTCTTGCTCTTGACCTACG 1184 |||| || || ||||||||||| |||||||| ||||||||||||||||| ||||||| Sbjct 1168 AATGGCAGAC-GCCAACATGCAATATGTGACGTCAACATCGTTCTTGCTCTTAACCTACG 1226 Query 1185 CCAAATACTTAACCTCTGCTCGCACC-GTCG-CTTATTGCGGTGGCTCCGTCGT-CAC-C 1240 |||||||||||||||| || | | | |||| | ||||||||||||||||| | ||| | Sbjct 1227 CCAAATACTTAACCTCCGC-CAAAACAGTCGTCC-ATTGCGGTGGCTCCGTC-TACACTC 1283 Query 1241 CCTGCCCGCCTCCGCTCCATCGCAAAGAA-ACAGGTGGATTATCTACTTGGAGGCAACCC 1299 || | | |||||||||||||||| || || ||||||||||||||||||||||| |||||| Sbjct 1284 CCGGTC-GCCTCCGCTCCATCGCCAA-AAGACAGGTGGATTATCTACTTGGAGACAACCC 1341 Query 1300 GTTGAAGA-TGTCATACATGGTTGGTTATGGTCTGAAATATCC-ACGTCGGATTCACCAC 1357 || |||| |||| |||||||||||||| |||| ||||| ||| ||| || || |||||| Sbjct 1342 ATT-AAGAATGTCTTACATGGTTGGTTACGGTCCGAAAT-TCCCACGGCGAATCCACCAC 1399 Query 1358 CGTGGCTCATCTCTCCCCTCCGTTGCA-GTCCACCCGACCAGGATCCAGTGCCACGACGG 1416 |||||||| ||| | || | |||||| | ||||||| ||| |||||| |||||| | || Sbjct 1400 CGTGGCTCCTCTTTACCTTGTGTTGCAAG-CCACCCGGCCAAGATCCAATGCCACCAAGG 1458 Query 1417 CTTCTCCT-TGTTTACCTCTCAATCTCCTAATCCTAACGACCTAGTCGGTGCAGTAGTCG 1475 ||| | | | | | |||||||||||| || |||||| ||| || |||||||| || | Sbjct 1459 CTT-TGCAATCATGAACTCTCAATCTCCAAACCCTAACTTCCTTGTTGGTGCAGTCGTTG 1517 Query 1476 GTGGTCCGGACCAGAACGATCAATTCCCTGACGAACGGTCCGACTACG-GACGGTCAGAG 1534 |||||||||||||| | |||| ||||| |||||||||||||| |||| | | ||| ||| Sbjct 1518 GTGGTCCGGACCAGCATGATCGCTTCCCGGACGAACGGTCCGATTACGAG-CAGTCCGAG 1576 Query 1535 CCAGCAACTTACATTAACGCTCCACTTGTTGGAGCT-TTGGCTTATCTT-GCTCGAT-CC 1591 || || |||||||| || || ||||| ||||||||| ||| || | ||| |||| | || Sbjct 1577 CCGGCTACTTACATCAATGCACCACTCGTTGGAGCTCTTGCCT-A-CTTCGCTC-ACGCC 1633 Query 1592 TAAGGCCAACT 1602 || || ||||| Sbjct 1634 TATGGTCAACT 1644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66200845810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5