BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02810.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333607 jgi|Araly1|333607|fgenesh1_pg.C_scaffold_1000172 1748 0.0
Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 942 0.0
> Ahg333607 jgi|Araly1|333607|fgenesh1_pg.C_scaffold_1000172
Length=1587
Score = 1748 bits (946), Expect = 0.0
Identities = 1062/1119 (95%), Gaps = 4/1119 (0%)
Strand=Plus/Plus
Query 20 ATGGAATCTCCAATATTCATTCTCATCACACTATCATT-CTTTCTTCAATCAGTTCTTGC 78
|||||||||||| || |||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 1 ATGGAATCTCCATTACTCATTCTCATCACACTATCATTCCTTT-TTCAATCAGTTGTTGT 59
Query 79 TTCTTCTCAAACTCTATCAAACTCTTCAACAATCTGCAAAACGACGCCGGATCCAAAGTA 138
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 60 TTCTTCACAAACTCTATCAAACTCTTCAACAATCTGCAAAACGACACCGGATCCAAAATA 119
Query 139 TTGCAAATCCGTTTTTCCACATAGCCAAGGCAATGTTCAACAATACGGCTGTTTCTCTAT 198
||||||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 120 TTGCAAATCCGTTTTCCCACATAGCCAAGGCAATGTCCAACAATACGGCCGCTTCTCTAT 179
Query 199 CCGCAAATCGCTATCGCAATCGCGAAAATTTATTCGCACCGTCGATAGATATATCAAACG 258
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CCGCAAATCGCTATCGCAATCGCGAAAATTCATTCGCACCGTCGATAGATATATCAAACG 239
Query 259 CAACGCTCATTTATCTCAACCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCGC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAACGCTCATTTATCTCAACCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCGC 299
Query 319 CGGTCTAACAATGGATTACCTCTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAAA 378
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTTAACAATGGATTACCTTTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAAA 359
Query 379 AACCTCTTTCAAACCGCTGTCGTTTCCCAAAGCCGACGACATCCAAACGCTTCTTTCCGC 438
| ||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 360 AGCCTCTTTCAAAACGCTGTCGTTTCCAAAAGCCGATGACATCCAAACGCTTCTTTCCGC 419
Query 439 GGCGCTGACTAATGAGCAGACGTGTCTTGAAGGACTTACCACGGCCGCTTCTTATTCCGC 498
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 420 GGCGTTGACTAACGAGCAGACGTGTCTTGAAGGACTTACCACCGCCGCTTCTTCTTCCGC 479
Query 499 CACGTGGACTGTAAGAACCGGCGTCGCTTTGCCTCTCGTCAATGACACGAAGCTCTTGGG 558
||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||
Sbjct 480 CACGTGGACTGTAAGAAACGGCGTCGCTTTACCTCTCGTTAATGACACGAAGCTCTTGGG 539
Query 559 CGTCTCACTCGCTCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACGGGCCGGGTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 CGTCTCACTCGCTCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACGAGCCGGGTT 599
Query 619 TGCTTGGGCCCAACCGAGATCCGGTTCATCGACCCACACTAAACCATTCCGTCTGTTCCG 678
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 600 TGCTTGGGCCCAACCGAGATCCGGTTCATCGACCCACACTAAACCGTACCGTCTGTTCCG 659
Query 679 TAACGGAGCTCTACCGTTAAAGATGACAGAGAAAACAAAAGCGGTTTACGAGTCACTCAG 738
||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 660 TAACGGAGCTCTACCGTTAAAGATGACGGAAAAAACAAAAGCCGTTTACGAGTCACTCAG 719
Query 739 CAGAAGAAAACTCGCCGACGGTGACAGTAACGGTGATGGAGACGACGGAAGCATGGTTCT 798
||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 720 CAGAAGAAAACTCTCCGAAGGTGACGGTAACGGTGATGGTGACGACGGAAGCATGGTTCT 779
Query 799 GATAAGCGATATCGTTACCGTGAGCCAAGACGGAACAGGAAATTTCACCAACATCACGGC 858
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 780 GATAAGCGATATCGTCACCGTGAGCCAAGATGGAACAGGAAATTTCACCAACATCACCGC 839
Query 859 AGCTGTAGCGGCGGCGCCGAACAACACCGACGGAAGCGCCGGTTTCTTTTTGATCTATGT 918
|||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||
Sbjct 840 AGCTGTAGCGGCGGCGCCAAATAACACAGACGGAAGCGCCGGTTTCTTCTTGATCTACGT 899
Query 919 GACGGCGGGAATCTACGAAGAGTATATCTCAATCGCGAAGAACAAAAGGTACATGATGAT 978
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 900 GACGGCGGGAATCTACGAAGAGTATATCTCGATCGCGAAGAATAAAAGGTACATGATGAT 959
Query 979 GATAGGTGACGGGATTAATCAGACGGTGGTCACCGGAAATAGAAGCGTCGTCGACGGTTG 1038
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 GATCGGCGACGGGATTAATCAGACGGTGGTCACCGGAAACAGAAGCGTCGTCGACGGTTG 1019
Query 1039 GACTACTTTCAATTCCGCCACATTTGCTGTGACAGCACCGAACTTTGTTGCGGTGAACAT 1098
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GACTACTTTTAACTCCGCCACATTTGCTGTGACAGCACCGAACTTTGTTGCGGTGAACAT 1079
Query 1099 AACGTTCCGGAACACGGCCGGACCGGAGAAGCACCAGGC 1137
||| |||||||||||||| ||||||||||| |||||||
Sbjct 1080 AACATTCCGGAACACGGCGGGACCGGAGAA--ACCAGGC 1116
Score = 684 bits (370), Expect = 0.0
Identities = 446/483 (92%), Gaps = 3/483 (1%)
Strand=Plus/Plus
Query 1278 GAAACGC-GGCAGTTGTGTTTCAAAACTGTAATTTATACCCGAGGAAACCGATGCCAAAT 1336
||||| | ||| || || ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct 1107 GAAAC-CAGGC-GTGGTATTTCAGAATTGTAATTTATATCCGAGAAAACCAATGCCGAAC 1164
Query 1337 CAGTTCAATGCTATCACCGCCCAAGGCCGGTCTGATCCGAACCAGAACACTGGTACATCA 1396
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1165 CAGTTCAATGCCATCACCGCACAAGGCCGGTCTGATCCGAACCAGAACACAGGTACGTCG 1224
Query 1397 ATCCAAAACTGTACGATTAAGCCGGCGGATGATCTTGTTTCGAGTAACTATACAGTTAAA 1456
||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| |
Sbjct 1225 ATCCAAAACTGTACGATTAAGCCCGCTGATGATCTTGTTTCGAGTAACTATACGGTTAGA 1284
Query 1457 ACGTATTTGGGTCGACCGTGGAAAGAGTATTCAAGGACGGTTTACATGCAATCGTACATT 1516
||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1285 ACGTATTTGGGTCGACCCTGGAAAGAGTATTCACGGACGGTGTACATGCAATCGTACATA 1344
Query 1517 GATGGTTTCGTTGAACCGGTTGGTTGGAGAGAATGGAACGGTGATTTTGCGTTAAGTACA 1576
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1345 GACGGTTTTGTTGAACCGGTTGGTTGGAGAGAGTGGAACGGTGATTTTGCGTTAAGTACA 1404
Query 1577 TTGTACTATGCAGAGTATAACAATACCGGACCGGGCTCAAACACTACAAACCGGGTTACA 1636
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1405 TTGTACTATGCAGAGTATAACAATACCGGACCTGGTTCAAACACTACAAACCGGGTTACA 1464
Query 1637 TGGCCTGGTTACCACGTGATTAATTCCACTGATGCAGCTAATTTCACGGTCACTGGTTTA 1696
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1465 TGGCCTGGTTACCACGTGATTAATTCGACTGATGCAGCTAATTTCACGGTCACTGGTTTA 1524
Query 1697 TTTATCGAAGCTGATTGGATTTGGAAGACAGGAGTGCCTTACACCAGCGGTCTAATTTCA 1756
|| ||||||| ||||||||||||||| || ||||||||||| ||||||||| ||||||||
Sbjct 1525 TTCATCGAAGATGATTGGATTTGGAAAACTGGAGTGCCTTATACCAGCGGTTTAATTTCA 1584
Query 1757 TAG 1759
|||
Sbjct 1585 TAG 1587
> Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1
Length=1849
Score = 942 bits (510), Expect = 0.0
Identities = 1280/1638 (78%), Gaps = 107/1638 (7%)
Strand=Plus/Plus
Query 91 TCTATCAAACTCTTCA---ACAATCTGCAAAACGACGCCGGATCCAAAGTATTGCAAATC 147
||| |||||||||||| || |||||||||||||| ||||||||||| | |||||||||
Sbjct 147 TCT-TCAAACTCTTCATCTACCATCTGCAAAACGACACCGGATCCAAAATTTTGCAAATC 205
Query 148 CGTTTTTCCAC--ATAGC-CAAGGCAATGTTCAAC-AATACGGCTGTTTCTCTATCCGCA 203
|| || |||| | | | |||||| | |||| | |||| ||| | ||||| ||||||
Sbjct 206 AGTGTTCCCACAAACATCTCAAGGCGACGTTC-GCGAATATGGCCGCTTCTCCCTCCGCA 264
Query 204 AATCGCTATCGCAATCGCGAAAATTTATTCGCACCG-TCGATAGATATATCAAACGCAAC 262
|||||||| ||||||||| |||||| | |||| || | || | ||| |||||||||||
Sbjct 265 AATCGCTAACGCAATCGCAAAAATTCACACGCA-CGATTGACAAATACCTCAAACGCAAC 323
Query 263 ---GCTCAT-TTATCTCAA-CCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCG 317
|| | | | || ||| || |||| | | ||||||||||||| ||||||| ||||
Sbjct 324 AATGC-CCTACTCTCCCAATCC-GCCG-T-T-GGAGCTCTCCAAGACTGCCGTTACCTCG 378
Query 318 CCGGTCTAACAATGGATTACCTCTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAA 377
| | || |||| || || |||||||||||||| || |||| | | | || ||| |
Sbjct 379 CAAGCCTCACAACAGACTATCTCTTAACGTCGTTTGACACCG-T--C-A-ACATCA-C-- 430
Query 378 AAACCTCTTTCAAACCGCTGTCGTTTCCCAAAGCCGACGACATCCAAACGCTTCTTTCCG 437
|| || | |||| || |||||||| ||||||||||||| |||||||| ||||| ||||
Sbjct 431 -TACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCAAACACTTCTCTCCG 489
Query 438 CGGCGCTGACTAATGAGCAGACGTGTCTTGAAGGACTTACCACGGCCGCTTCTTATTCCG 497
| ||| ||||||| ||||| || |||||||| ||| | | || |||| | ||||
Sbjct 490 CCGCGTTGACTAACGAGCAAACATGTCTTGACGGA-AT-CAAC-ACCGCAGC---TTCCA 543
Query 498 CCACGTGGACTGTAAGAACCGGCGTCGCTTTGCCTCTCGTCAATGACACGAAGCTCTTGG 557
| | ||||| || ||| ||||||||| |||||||| |||| ||||| ||||||||
Sbjct 544 CTTCTTGGACCATACGAAACGGCGTCGCATTGCCTCTAATCAACGACACAAAGCTCTTTA 603
Query 558 GCGTCTCACTCGC-TCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAAC---GGGCC 613
| ||||| ||||| | | |||||||||||||||||||||||||||||||||| |||
Sbjct 604 GTGTCTCGCTCGCAT-TATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACAAATAGCC 662
Query 614 GGGTT--TGCTTGGGCCCAACCG-AG-ATCCGGTTCATCGACCCACACTAAACCATTCCG 669
|||| | ||||||| || ||| || || | ||| | | ||||| |||||||||||
Sbjct 663 -GGTTACT-CTTGGGCTCATCCGAAGAATAC---TCA-C-AGTCACACAAAACCATTCCG 715
Query 670 TCTGTTCCGTAACGGAGCTCTACCGTTAAAGATGACAGAGAAAACAAAAGCG--GTTTAC 727
|| |||||||||||||||| |||||||||||||||| | ||| ||| | ||| ||||||
Sbjct 716 TCAGTTCCGTAACGGAGCTTTACCGTTAAAGATGAC-G-GAACACACACGCGCCGTTTAC 773
Query 728 GAGTCACTCAGCAGAAGAAAACTCGCCGACGGTGACAGTAACGGTGATGGAGACGACGGA 787
||||| | || || || ||||| || ||| ||| | || ||||| | | ||
Sbjct 774 GAGTCTTTAAGTAGGAGGAAACTGGCAGAC---GAC-G--ACAATGATGTA-A--AC--- 821
Query 788 AGCATGGTTC-TGATAAGCGATATCGTTACCGTGAGCCAAGACGGAACAGGAAATTTCAC 846
| | ||||| || | ||||| || || || |||| |||| ||||||| || ||||||||
Sbjct 822 A-C--GGTTCTTG-TGAGCGACATGGTAACGGTGAACCAAAACGGAACGGGGAATTTCAC 877
Query 847 CAACATCACGGCAGCTG-TAGCGGCGGCGCCGAACAACACCGACGGAAGCGCCGGTTTCT 905
| ||| |||| ||||| || ||||||||||||| || || ||||| | |||||| || |
Sbjct 878 GACCATAACGGAAGCTGTTA-CGGCGGCGCCGAATAAAACTGACGGTACCGCCGG-TTAT 935
Query 906 TT--TTGATCTATGTGACGGCGGGAATCTACGAAGAGTA--TATCTCAATCGCGAAGAAC 961
|| || ||||| |||||| | || | || || || | || | || || ||||||
Sbjct 936 TTCGTT-ATCTACGTGACGTCAGGTGTTTATGAGGAAAACGTA-GT-GATTGCAAAGAAC 992
Query 962 AAAAGGTA-CATGATGATGATAGGTGACGGGATTAATCAG-ACGGTGGTCACCGG-AAAT 1018
||||| || | | |||||||| |||||| ||| ||| | | |||||||| ||||| ||
Sbjct 993 AAAAGATATC-TAATGATGATTGGTGAC-GGAATAAACCGTACGGTGGTTACCGGTAACC 1050
Query 1019 AGAAGCGTCGTCGACGGTTGGACTACTTTCAATTCCGCCACATTTGCTGTGACAGCACCG 1078
||| || |||||||||||||| |||||||| |||||||| ||||| |||||| | |||
Sbjct 1051 GGAA-TGTTGTCGACGGTTGGACCACTTTCAACTCCGCCACTTTTGCCGTGACATCGCCG 1109
Query 1079 AACTTTGTTGCGGTGAACATAACGTTCCGGAACACGGCCGGACCGGAGAAGCACCAGGCT 1138
||||| ||||| |||||||| || ||||| || || || ||||| ||||||||||||||
Sbjct 1110 AACTTCGTTGCCGTGAACATGACTTTCCGAAATACCGCTGGACCAGAGAAGCACCAGGCC 1169
Query 1139 GTTGCGT-T-ACGGAGCGGCGCAGATTTCTCAATCTTCTATAGTTGTAGTTTCGAGGCTT 1196
|| || | | | ||||| | |||||| |||| |||||||||||||| |||||||| ||||
Sbjct 1170 GTGGC-TATGA-GGAGCAGTGCAGATCTCTCGATCTTCTATAGTTGCAGTTTCGAAGCTT 1227
Query 1197 ATCAAGATACACTCTACACACATTCTCTAAGACAGTTTTATAGAGAATGCGATGTCTATG 1256
||||||| || | ||||||||||| ||| |||| || ||||||||||| || | ||||
Sbjct 1228 ATCAAGACACTTTATACACACATTCACTACGACAATTCTATAGAGAATGTGACATTTATG 1287
Query 1257 GAACGGTCGATTTTATATTTGGAAACGCGGCAGTTGTGTTTCAAAACTGTAATTTATACC 1316
| || |||||||| ||||| || || || || |||||||| |||||||||||| |||| |
Sbjct 1288 GTACAGTCGATTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAACTGTAATCTATATC 1347
Query 1317 CGAGGA-AACCGATGCCA-AATCAGTTCAATGCTATCACCGCCCAAGGCCGGT-CTGATC 1373
| | || | |||||| || || ||||| || ||||| || || ||||| | || ||||||
Sbjct 1348 C-AAGACAGCCGATG-CAGAACCAGTTTAACGCTATTACAGCTCAAGGTC-GTACTGATC 1404
Query 1374 CGAACCAGAACACTGGTACATCAATCCAAAACTGTACGATTAAGCCGGCGGATGATCTT- 1432
|||| || ||||| || | || ||||| || ||||||||||| || || |||||| ||
Sbjct 1405 CGAATCAAAACACAGGAATTTCTATCCACAATTGTACGATTAAACCAGCAGATGAT-TTG 1463
Query 1433 GTTTCGAGTAACTATACAGTTAAAACGTATTTGGGTCGACCGTGGAAAGAGTATTCAAGG 1492
|||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||| ||
Sbjct 1464 GTTTCGAGCAACTATACGGTTAAAACGTATTTGGGACGACCATGGAAGGAGTATTCACGG 1523
Query 1493 ACGGTTTACATGCAATCGTACATTGATG-GTTTCGTTGAACCGGTTGGTTGGAGAGAATG 1551
|| |||| |||||||||||||| || | | || ||||||||||||||||||||||||||
Sbjct 1524 ACAGTTTTTATGCAATCGTACATAGACGAGGTT-GTTGAACCGGTTGGTTGGAGAGAATG 1582
Query 1552 GAACGGTGATTTTGCGTTAAGTACATTGTACTATGCAGAGTATAACAATACCGGA-CCGG 1610
|||||| ||||| || || ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct 1583 GAACGGAGATTTCGCATTGAGTACGTTGTACTATGCTGAGTATAACAATACCGGATCCGG 1642
Query 1611 GCTCAAACACTACAAACCGGGTTACATGGCCTGGTTACCACGTGATTAATTCCACTGATG 1670
||||| |||||| |||| || ||||||||||| |||||||||||||| || ||||
Sbjct 1643 T-TCAAATACTACAGACCGAGTGGTTTGGCCTGGTTATCACGTGATTAATTCTACCGATG 1701
Query 1671 C-AGCTAATTTCACGGTC 1687
| | |||||||||||||
Sbjct 1702 CGAA-TAATTTCACGGTC 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5