BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02810.1 Length=1906 Score E Sequences producing significant alignments: (Bits) Value Ahg333607 jgi|Araly1|333607|fgenesh1_pg.C_scaffold_1000172 1748 0.0 Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 942 0.0 > Ahg333607 jgi|Araly1|333607|fgenesh1_pg.C_scaffold_1000172 Length=1587 Score = 1748 bits (946), Expect = 0.0 Identities = 1062/1119 (95%), Gaps = 4/1119 (0%) Strand=Plus/Plus Query 20 ATGGAATCTCCAATATTCATTCTCATCACACTATCATT-CTTTCTTCAATCAGTTCTTGC 78 |||||||||||| || |||||||||||||||||||||| |||| ||||||||||| ||| Sbjct 1 ATGGAATCTCCATTACTCATTCTCATCACACTATCATTCCTTT-TTCAATCAGTTGTTGT 59 Query 79 TTCTTCTCAAACTCTATCAAACTCTTCAACAATCTGCAAAACGACGCCGGATCCAAAGTA 138 |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 60 TTCTTCACAAACTCTATCAAACTCTTCAACAATCTGCAAAACGACACCGGATCCAAAATA 119 Query 139 TTGCAAATCCGTTTTTCCACATAGCCAAGGCAATGTTCAACAATACGGCTGTTTCTCTAT 198 ||||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| Sbjct 120 TTGCAAATCCGTTTTCCCACATAGCCAAGGCAATGTCCAACAATACGGCCGCTTCTCTAT 179 Query 199 CCGCAAATCGCTATCGCAATCGCGAAAATTTATTCGCACCGTCGATAGATATATCAAACG 258 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 180 CCGCAAATCGCTATCGCAATCGCGAAAATTCATTCGCACCGTCGATAGATATATCAAACG 239 Query 259 CAACGCTCATTTATCTCAACCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCGC 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CAACGCTCATTTATCTCAACCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCGC 299 Query 319 CGGTCTAACAATGGATTACCTCTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAAA 378 ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 300 TGGTTTAACAATGGATTACCTTTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAAA 359 Query 379 AACCTCTTTCAAACCGCTGTCGTTTCCCAAAGCCGACGACATCCAAACGCTTCTTTCCGC 438 | ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 360 AGCCTCTTTCAAAACGCTGTCGTTTCCAAAAGCCGATGACATCCAAACGCTTCTTTCCGC 419 Query 439 GGCGCTGACTAATGAGCAGACGTGTCTTGAAGGACTTACCACGGCCGCTTCTTATTCCGC 498 |||| ||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 420 GGCGTTGACTAACGAGCAGACGTGTCTTGAAGGACTTACCACCGCCGCTTCTTCTTCCGC 479 Query 499 CACGTGGACTGTAAGAACCGGCGTCGCTTTGCCTCTCGTCAATGACACGAAGCTCTTGGG 558 ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| Sbjct 480 CACGTGGACTGTAAGAAACGGCGTCGCTTTACCTCTCGTTAATGACACGAAGCTCTTGGG 539 Query 559 CGTCTCACTCGCTCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACGGGCCGGGTT 618 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 CGTCTCACTCGCTCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACGAGCCGGGTT 599 Query 619 TGCTTGGGCCCAACCGAGATCCGGTTCATCGACCCACACTAAACCATTCCGTCTGTTCCG 678 ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 600 TGCTTGGGCCCAACCGAGATCCGGTTCATCGACCCACACTAAACCGTACCGTCTGTTCCG 659 Query 679 TAACGGAGCTCTACCGTTAAAGATGACAGAGAAAACAAAAGCGGTTTACGAGTCACTCAG 738 ||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 660 TAACGGAGCTCTACCGTTAAAGATGACGGAAAAAACAAAAGCCGTTTACGAGTCACTCAG 719 Query 739 CAGAAGAAAACTCGCCGACGGTGACAGTAACGGTGATGGAGACGACGGAAGCATGGTTCT 798 ||||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct 720 CAGAAGAAAACTCTCCGAAGGTGACGGTAACGGTGATGGTGACGACGGAAGCATGGTTCT 779 Query 799 GATAAGCGATATCGTTACCGTGAGCCAAGACGGAACAGGAAATTTCACCAACATCACGGC 858 ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct 780 GATAAGCGATATCGTCACCGTGAGCCAAGATGGAACAGGAAATTTCACCAACATCACCGC 839 Query 859 AGCTGTAGCGGCGGCGCCGAACAACACCGACGGAAGCGCCGGTTTCTTTTTGATCTATGT 918 |||||||||||||||||| || ||||| |||||||||||||||||||| |||||||| || Sbjct 840 AGCTGTAGCGGCGGCGCCAAATAACACAGACGGAAGCGCCGGTTTCTTCTTGATCTACGT 899 Query 919 GACGGCGGGAATCTACGAAGAGTATATCTCAATCGCGAAGAACAAAAGGTACATGATGAT 978 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 900 GACGGCGGGAATCTACGAAGAGTATATCTCGATCGCGAAGAATAAAAGGTACATGATGAT 959 Query 979 GATAGGTGACGGGATTAATCAGACGGTGGTCACCGGAAATAGAAGCGTCGTCGACGGTTG 1038 ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 960 GATCGGCGACGGGATTAATCAGACGGTGGTCACCGGAAACAGAAGCGTCGTCGACGGTTG 1019 Query 1039 GACTACTTTCAATTCCGCCACATTTGCTGTGACAGCACCGAACTTTGTTGCGGTGAACAT 1098 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GACTACTTTTAACTCCGCCACATTTGCTGTGACAGCACCGAACTTTGTTGCGGTGAACAT 1079 Query 1099 AACGTTCCGGAACACGGCCGGACCGGAGAAGCACCAGGC 1137 ||| |||||||||||||| ||||||||||| ||||||| Sbjct 1080 AACATTCCGGAACACGGCGGGACCGGAGAA--ACCAGGC 1116 Score = 684 bits (370), Expect = 0.0 Identities = 446/483 (92%), Gaps = 3/483 (1%) Strand=Plus/Plus Query 1278 GAAACGC-GGCAGTTGTGTTTCAAAACTGTAATTTATACCCGAGGAAACCGATGCCAAAT 1336 ||||| | ||| || || ||||| || ||||||||||| ||||| ||||| ||||| || Sbjct 1107 GAAAC-CAGGC-GTGGTATTTCAGAATTGTAATTTATATCCGAGAAAACCAATGCCGAAC 1164 Query 1337 CAGTTCAATGCTATCACCGCCCAAGGCCGGTCTGATCCGAACCAGAACACTGGTACATCA 1396 ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 1165 CAGTTCAATGCCATCACCGCACAAGGCCGGTCTGATCCGAACCAGAACACAGGTACGTCG 1224 Query 1397 ATCCAAAACTGTACGATTAAGCCGGCGGATGATCTTGTTTCGAGTAACTATACAGTTAAA 1456 ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 1225 ATCCAAAACTGTACGATTAAGCCCGCTGATGATCTTGTTTCGAGTAACTATACGGTTAGA 1284 Query 1457 ACGTATTTGGGTCGACCGTGGAAAGAGTATTCAAGGACGGTTTACATGCAATCGTACATT 1516 ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| Sbjct 1285 ACGTATTTGGGTCGACCCTGGAAAGAGTATTCACGGACGGTGTACATGCAATCGTACATA 1344 Query 1517 GATGGTTTCGTTGAACCGGTTGGTTGGAGAGAATGGAACGGTGATTTTGCGTTAAGTACA 1576 || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1345 GACGGTTTTGTTGAACCGGTTGGTTGGAGAGAGTGGAACGGTGATTTTGCGTTAAGTACA 1404 Query 1577 TTGTACTATGCAGAGTATAACAATACCGGACCGGGCTCAAACACTACAAACCGGGTTACA 1636 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1405 TTGTACTATGCAGAGTATAACAATACCGGACCTGGTTCAAACACTACAAACCGGGTTACA 1464 Query 1637 TGGCCTGGTTACCACGTGATTAATTCCACTGATGCAGCTAATTTCACGGTCACTGGTTTA 1696 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1465 TGGCCTGGTTACCACGTGATTAATTCGACTGATGCAGCTAATTTCACGGTCACTGGTTTA 1524 Query 1697 TTTATCGAAGCTGATTGGATTTGGAAGACAGGAGTGCCTTACACCAGCGGTCTAATTTCA 1756 || ||||||| ||||||||||||||| || ||||||||||| ||||||||| |||||||| Sbjct 1525 TTCATCGAAGATGATTGGATTTGGAAAACTGGAGTGCCTTATACCAGCGGTTTAATTTCA 1584 Query 1757 TAG 1759 ||| Sbjct 1585 TAG 1587 > Ahg490338 jgi|Araly1|490338|fgenesh2_kg.6__3472__AT4G02330.1 Length=1849 Score = 942 bits (510), Expect = 0.0 Identities = 1280/1638 (78%), Gaps = 107/1638 (7%) Strand=Plus/Plus Query 91 TCTATCAAACTCTTCA---ACAATCTGCAAAACGACGCCGGATCCAAAGTATTGCAAATC 147 ||| |||||||||||| || |||||||||||||| ||||||||||| | ||||||||| Sbjct 147 TCT-TCAAACTCTTCATCTACCATCTGCAAAACGACACCGGATCCAAAATTTTGCAAATC 205 Query 148 CGTTTTTCCAC--ATAGC-CAAGGCAATGTTCAAC-AATACGGCTGTTTCTCTATCCGCA 203 || || |||| | | | |||||| | |||| | |||| ||| | ||||| |||||| Sbjct 206 AGTGTTCCCACAAACATCTCAAGGCGACGTTC-GCGAATATGGCCGCTTCTCCCTCCGCA 264 Query 204 AATCGCTATCGCAATCGCGAAAATTTATTCGCACCG-TCGATAGATATATCAAACGCAAC 262 |||||||| ||||||||| |||||| | |||| || | || | ||| ||||||||||| Sbjct 265 AATCGCTAACGCAATCGCAAAAATTCACACGCA-CGATTGACAAATACCTCAAACGCAAC 323 Query 263 ---GCTCAT-TTATCTCAA-CCTGCCGTTATCAGAGCTCTCCAAGATTGCCGTTTTCTCG 317 || | | | || ||| || |||| | | ||||||||||||| ||||||| |||| Sbjct 324 AATGC-CCTACTCTCCCAATCC-GCCG-T-T-GGAGCTCTCCAAGACTGCCGTTACCTCG 378 Query 318 CCGGTCTAACAATGGATTACCTCTTAACGTCGTTCGAAACCGTTAACGACACGTCAGCAA 377 | | || |||| || || |||||||||||||| || |||| | | | || ||| | Sbjct 379 CAAGCCTCACAACAGACTATCTCTTAACGTCGTTTGACACCG-T--C-A-ACATCA-C-- 430 Query 378 AAACCTCTTTCAAACCGCTGTCGTTTCCCAAAGCCGACGACATCCAAACGCTTCTTTCCG 437 || || | |||| || |||||||| ||||||||||||| |||||||| ||||| |||| Sbjct 431 -TACATCATCCAAAACGTTGTCGTTTTCCAAAGCCGACGAAATCCAAACACTTCTCTCCG 489 Query 438 CGGCGCTGACTAATGAGCAGACGTGTCTTGAAGGACTTACCACGGCCGCTTCTTATTCCG 497 | ||| ||||||| ||||| || |||||||| ||| | | || |||| | |||| Sbjct 490 CCGCGTTGACTAACGAGCAAACATGTCTTGACGGA-AT-CAAC-ACCGCAGC---TTCCA 543 Query 498 CCACGTGGACTGTAAGAACCGGCGTCGCTTTGCCTCTCGTCAATGACACGAAGCTCTTGG 557 | | ||||| || ||| ||||||||| |||||||| |||| ||||| |||||||| Sbjct 544 CTTCTTGGACCATACGAAACGGCGTCGCATTGCCTCTAATCAACGACACAAAGCTCTTTA 603 Query 558 GCGTCTCACTCGC-TCTCTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAAC---GGGCC 613 | ||||| ||||| | | |||||||||||||||||||||||||||||||||| ||| Sbjct 604 GTGTCTCGCTCGCAT-TATTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAACAAATAGCC 662 Query 614 GGGTT--TGCTTGGGCCCAACCG-AG-ATCCGGTTCATCGACCCACACTAAACCATTCCG 669 |||| | ||||||| || ||| || || | ||| | | ||||| ||||||||||| Sbjct 663 -GGTTACT-CTTGGGCTCATCCGAAGAATAC---TCA-C-AGTCACACAAAACCATTCCG 715 Query 670 TCTGTTCCGTAACGGAGCTCTACCGTTAAAGATGACAGAGAAAACAAAAGCG--GTTTAC 727 || |||||||||||||||| |||||||||||||||| | ||| ||| | ||| |||||| Sbjct 716 TCAGTTCCGTAACGGAGCTTTACCGTTAAAGATGAC-G-GAACACACACGCGCCGTTTAC 773 Query 728 GAGTCACTCAGCAGAAGAAAACTCGCCGACGGTGACAGTAACGGTGATGGAGACGACGGA 787 ||||| | || || || ||||| || ||| ||| | || ||||| | | || Sbjct 774 GAGTCTTTAAGTAGGAGGAAACTGGCAGAC---GAC-G--ACAATGATGTA-A--AC--- 821 Query 788 AGCATGGTTC-TGATAAGCGATATCGTTACCGTGAGCCAAGACGGAACAGGAAATTTCAC 846 | | ||||| || | ||||| || || || |||| |||| ||||||| || |||||||| Sbjct 822 A-C--GGTTCTTG-TGAGCGACATGGTAACGGTGAACCAAAACGGAACGGGGAATTTCAC 877 Query 847 CAACATCACGGCAGCTG-TAGCGGCGGCGCCGAACAACACCGACGGAAGCGCCGGTTTCT 905 | ||| |||| ||||| || ||||||||||||| || || ||||| | |||||| || | Sbjct 878 GACCATAACGGAAGCTGTTA-CGGCGGCGCCGAATAAAACTGACGGTACCGCCGG-TTAT 935 Query 906 TT--TTGATCTATGTGACGGCGGGAATCTACGAAGAGTA--TATCTCAATCGCGAAGAAC 961 || || ||||| |||||| | || | || || || | || | || || |||||| Sbjct 936 TTCGTT-ATCTACGTGACGTCAGGTGTTTATGAGGAAAACGTA-GT-GATTGCAAAGAAC 992 Query 962 AAAAGGTA-CATGATGATGATAGGTGACGGGATTAATCAG-ACGGTGGTCACCGG-AAAT 1018 ||||| || | | |||||||| |||||| ||| ||| | | |||||||| ||||| || Sbjct 993 AAAAGATATC-TAATGATGATTGGTGAC-GGAATAAACCGTACGGTGGTTACCGGTAACC 1050 Query 1019 AGAAGCGTCGTCGACGGTTGGACTACTTTCAATTCCGCCACATTTGCTGTGACAGCACCG 1078 ||| || |||||||||||||| |||||||| |||||||| ||||| |||||| | ||| Sbjct 1051 GGAA-TGTTGTCGACGGTTGGACCACTTTCAACTCCGCCACTTTTGCCGTGACATCGCCG 1109 Query 1079 AACTTTGTTGCGGTGAACATAACGTTCCGGAACACGGCCGGACCGGAGAAGCACCAGGCT 1138 ||||| ||||| |||||||| || ||||| || || || ||||| |||||||||||||| Sbjct 1110 AACTTCGTTGCCGTGAACATGACTTTCCGAAATACCGCTGGACCAGAGAAGCACCAGGCC 1169 Query 1139 GTTGCGT-T-ACGGAGCGGCGCAGATTTCTCAATCTTCTATAGTTGTAGTTTCGAGGCTT 1196 || || | | | ||||| | |||||| |||| |||||||||||||| |||||||| |||| Sbjct 1170 GTGGC-TATGA-GGAGCAGTGCAGATCTCTCGATCTTCTATAGTTGCAGTTTCGAAGCTT 1227 Query 1197 ATCAAGATACACTCTACACACATTCTCTAAGACAGTTTTATAGAGAATGCGATGTCTATG 1256 ||||||| || | ||||||||||| ||| |||| || ||||||||||| || | |||| Sbjct 1228 ATCAAGACACTTTATACACACATTCACTACGACAATTCTATAGAGAATGTGACATTTATG 1287 Query 1257 GAACGGTCGATTTTATATTTGGAAACGCGGCAGTTGTGTTTCAAAACTGTAATTTATACC 1316 | || |||||||| ||||| || || || || |||||||| |||||||||||| |||| | Sbjct 1288 GTACAGTCGATTTCATATTCGGCAATGCAGCTGTTGTGTTCCAAAACTGTAATCTATATC 1347 Query 1317 CGAGGA-AACCGATGCCA-AATCAGTTCAATGCTATCACCGCCCAAGGCCGGT-CTGATC 1373 | | || | |||||| || || ||||| || ||||| || || ||||| | || |||||| Sbjct 1348 C-AAGACAGCCGATG-CAGAACCAGTTTAACGCTATTACAGCTCAAGGTC-GTACTGATC 1404 Query 1374 CGAACCAGAACACTGGTACATCAATCCAAAACTGTACGATTAAGCCGGCGGATGATCTT- 1432 |||| || ||||| || | || ||||| || ||||||||||| || || |||||| || Sbjct 1405 CGAATCAAAACACAGGAATTTCTATCCACAATTGTACGATTAAACCAGCAGATGAT-TTG 1463 Query 1433 GTTTCGAGTAACTATACAGTTAAAACGTATTTGGGTCGACCGTGGAAAGAGTATTCAAGG 1492 |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||| || Sbjct 1464 GTTTCGAGCAACTATACGGTTAAAACGTATTTGGGACGACCATGGAAGGAGTATTCACGG 1523 Query 1493 ACGGTTTACATGCAATCGTACATTGATG-GTTTCGTTGAACCGGTTGGTTGGAGAGAATG 1551 || |||| |||||||||||||| || | | || |||||||||||||||||||||||||| Sbjct 1524 ACAGTTTTTATGCAATCGTACATAGACGAGGTT-GTTGAACCGGTTGGTTGGAGAGAATG 1582 Query 1552 GAACGGTGATTTTGCGTTAAGTACATTGTACTATGCAGAGTATAACAATACCGGA-CCGG 1610 |||||| ||||| || || ||||| ||||||||||| |||||||||||||||||| |||| Sbjct 1583 GAACGGAGATTTCGCATTGAGTACGTTGTACTATGCTGAGTATAACAATACCGGATCCGG 1642 Query 1611 GCTCAAACACTACAAACCGGGTTACATGGCCTGGTTACCACGTGATTAATTCCACTGATG 1670 ||||| |||||| |||| || ||||||||||| |||||||||||||| || |||| Sbjct 1643 T-TCAAATACTACAGACCGAGTGGTTTGGCCTGGTTATCACGTGATTAATTCTACCGATG 1701 Query 1671 C-AGCTAATTTCACGGTC 1687 | | ||||||||||||| Sbjct 1702 CGAA-TAATTTCACGGTC 1718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71609660600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5