BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02813.1

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470239 jgi|Araly1|470239|fgenesh2_kg.1__193__AT1G02813.1          780    0.0  


> Ahg470239 jgi|Araly1|470239|fgenesh2_kg.1__193__AT1G02813.1
Length=518

 Score =  780 bits (422),  Expect = 0.0
 Identities = 491/523 (94%), Gaps = 10/523 (2%)
 Strand=Plus/Plus

Query  95   AATGTCCATTTTCATCATCTTCCTCCTTCTTCTCTCTACTTCTGTATCCGTCTCCGGCCa  154
            ||||||||| ||||| |||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct  1    AATGTCCATCTTCATGATCTTCTTCCTCCTTCTCTCTACTTCTTTATCCGTCTCCGGCCA  60

Query  155  aaaaaaGCGAAGTGTCTACCAGGTTCTCGAAAACTACACCTTACCACGAGGAATATTACC  214
            |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  61   AAAAAAGCCAAGTGTTTACCAGGTTCTCGAAAACTACACCTTACCACGAGGAATCTTACC  120

Query  215  AGAAGGTGTCCACGACTACGACCTAAACCGAAGAACTGGCGTTTTCAAAGTCCGTTTCAA  274
            ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGAAGGTGTGCACGACTACGAGCTAAACCGAAGAACTGGCGTTTTCAAAGTCCGTTTCAA  180

Query  275  CACCACGTG-TCAGTTCTCCATAGACTCGTACAAGGTCAAATACAAACCCGTAATCTCCG  333
            ||||||||| || ||||||||| || ||||||||||||||||||||||||  ||||||||
Sbjct  181  CACCACGTGTTC-GTTCTCCATCGAGTCGTACAAGGTCAAATACAAACCCACAATCTCCG  239

Query  334  GCATCATAACAAGAGGACGGGTCATAAGGTTGATAGGCGTAAGCGTCAAAGTTCTTTTCT  393
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  240  GCATCATAACAAGAGGACGGGTCATAAGGTTGATAGGCGTAAGCGTCAAAGTGCTTTTCT  299

Query  394  TTTGGATCAACATCTCCGAGGTGTCTCGTGACGGCGACGACGTCGAGTTCTTCGTTGGTG  453
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  300  TTTGGATCAACATCTCCGAGGTGTCTCGTGACGGCGACGATGTCGAGTTCTTCGTTGGTG  359

Query  454  CTGCTTCGGAGGAGTTCTCGAGCAAGTATTTCGTGGACAGCCCAAAGTGTGGTTGTGGGT  513
            |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  360  CTGCCTCGGAGGAGTTCTCGACCAAGTATTTCGTGGACAGCCCAAAGTGTGGTTGTGGGT  419

Query  514  TTAATTGTTATAGGCCTATCTCTTCCTCTTAAAGCCCATGGGCCTTAAAGCTGTTA---T  570
            ||||||||||||||||||||||||||| |||||||||||||||||||||  | | |   |
Sbjct  420  TTAATTGTTATAGGCCTATCTCTTCCTTTTAAAGCCCATGGGCCTTAAA--T-TAAACCT  476

Query  571  GATTAT-AATATATAAAATAAACACGGCCTCGAAGCTGTTATG  612
            | |||| |||| |||||||||||||||||| ||||||||||||
Sbjct  477  G-TTATGAATAAATAAAATAAACACGGCCTTGAAGCTGTTATG  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22378152279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5