BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G02830.1

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg470241 jgi|Araly1|470241|fgenesh2_kg.1__195__AT1G02830.1          315    2e-85


> Ahg470241 jgi|Araly1|470241|fgenesh2_kg.1__195__AT1G02830.1
Length=336

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 217/239 (91%), Gaps = 6/239 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTCGA-G--TAGGGGCCAAGTCGAGTGGAGCTGGTGCTAAGAAGAAAGGAGTTTCT  57
            ||||||||| |  ||| ||| ||||||||| | | ||||||||||||||||||||| || 
Sbjct  1    ATGGCTCGAGGAATAGCGGCGAAGTCGAGT-G-G-TGGTGCTAAGAAGAAAGGAGTGTCG  57

Query  58   TTTGTGATCGACTGCTCTAAACCAGTTGATGATACGATCTTGGAGATAGCCACGCTTGAG  117
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  58   TTTGTGATCGACTGCTCTAAACCAGTTGATGATACGATCATGGAGATAGCCACGCTTGAG  117

Query  118  AAGTTTCTTCAGGAACGAATCAAGGTCAGAGGTAAAGCCGGTGCTCTTGGTAACTCCGTC  177
            ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| 
Sbjct  118  AAGTTTCTTCAGGAACGAATCAAGGTCGGAGGTAAAGCCGGTTCTCTTGGTAACTCCGTT  177

Query  178  TCCATCACCCGATATAATGGAAAGATCAATGTCAACGCCAATTCCAATTTCTCCAAACG  236
            ||||| |||||| |||||| ||||||||  ||||||||| ||||||| ||||| |||||
Sbjct  178  TCCATTACCCGAGATAATGTAAAGATCACCGTCAACGCCGATTCCAACTTCTCTAAACG  236


 Score =  139 bits (75),  Expect = 1e-32
 Identities = 83/87 (95%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  298  GTGATTGCATCTAACAAAGACAAAAATGTCTACGAGGTACGCTACTTCAGGATTGACGAT  357
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  250  GTGATTGCATCTAACAAAGACAAAAATGTCTATGAGGTACGCTACTTCAGGATTGACGAT  309

Query  358  GAAGTAGCTAGTTACGAGGAAGATTAA  384
            ||||||||||||  ||| |||||||||
Sbjct  310  GAAGTAGCTAGTGCCGAAGAAGATTAA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13736012040


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5