BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02840.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311385 jgi|Araly1|311385|fgenesh1_pm.C_scaffold_1000165 1177 0.0
Ahg327556 jgi|Araly1|327556|fgenesh1_pm.C_scaffold_6002776 756 0.0
> Ahg311385 jgi|Araly1|311385|fgenesh1_pm.C_scaffold_1000165
Length=894
Score = 1177 bits (637), Expect = 0.0
Identities = 775/835 (93%), Gaps = 36/835 (4%)
Strand=Plus/Plus
Query 94 ATGAGCAGTCGTTCGAGTAGAACCGTGTACGTCGGAAACCTTCCTGGCGATATCCGTGAG 153
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGCAGCCGTTCGAGTAGAACCGTGTACGTTGGAAACCTTCCTGGCGATATCCGTGAG 60
Query 154 AGAGAGGTCGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTT 213
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGAGGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTC 120
Query 214 CCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGAT 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGAT 180
Query 274 GCTATTCATGGTCGTGATGGCTATGACTTTGATGGGCATCGTTTGAGGGTGGAATTGGCG 333
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GCTATTCAAGGTCGGGATGGCTATGACTTTGATGGGCATCGTTTGCGGGTGGAATTGGCG 240
Query 334 CATGGTGGGAGGCGTTCATCAGATGATACTCGGGGTAGTTTCAAtggtggtggccgtggt 393
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 CATGGTGGGAGGCGTTCATCAGATGATACTAGGGGTAGTTTCAATGGTGGTGGCCGTGGT 300
Query 394 ggt-g--gt---cgc------ggccgtggtgatggtggtagtcgtggGCCATCTAGGAGA 441
||| | || ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GGTGGACGTGGCCGCGGTGATGGCCGTGGTGATGGTGGTAGTCGTGGCCCATCTAGGAGA 360
Query 442 TCAGAGTTTCGTGTTCTAGTCACAGGCTTGCCTTCATCTGCTTCTTGGCAAGATCTCAAG 501
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TCAGAGTTTCGTGTTCTGGTCACAGGCTTGCCTTCTTCTGCTTCTTGGCAAGATCTCAAG 420
Query 502 GATCACATGCGTAAAGGAGGCGATGTCTGTTTCTCGCAAGTGTACCGTGATGCTAGAGGG 561
|||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 421 GATCACATGCGTAAAGGAGGGGACGTCTGTTTCTCGCAAGTGTACCGTGATGGTAGAGGT 480
Query 562 ACAACTGGAGTTGTTGATTACACCTGCTATGAGGACATGAAGTATGCGCTGAAAAAGCTC 621
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 ACAACTGGAGTTGTCGATTACACCTGCTATGAGGACATGAAGTATGCGGTGAAAAAGCTC 540
Query 622 GACGACACAGAGTTTCGAAATGCGTTTTCGAATGGATATGTCCGGGTTAGAGAATATGAT 681
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||
Sbjct 541 GACGACACAGAGTTTCGAAATGCGTTTTCTCATGGATATGTTCGGGTTAGAGAATACGAT 600
Query 682 TCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTA--AG----AGCCGC 735
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 601 TCAAGGAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAGGAGTCGCAGCCGC 660
Query 736 AGCCGCAGCCGTGGACGAAGCGTGAGCCGAAGCAGGAGCAG-A--AG---CAG--G-AG- 785
|||||||||||||| |||||| ||||||||||||||||||| | || ||| | ||
Sbjct 661 AGCCGCAGCCGTGGGCGAAGCTTGAGCCGAAGCAGGAGCAGGAGCAGGAGCAGAAGCAGG 720
Query 786 --CAGGAGCAG-A--AG---TCCCAAGGCAAAGTCTTCACGTAGGTCCCCTGCAAAATCT 837
||||||||| | || ||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 AGCAGGAGCAGGAGCAGGAGTCCAAAGGCAAAGTCTTCACGTAGGTCCCCTGCAAAATCT 780
Query 838 ACATCAAGATCTCCTGGCCCCCGCTCGAAGTCAAGGTCACCGTCTCCAAGAAGAT 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACATCAAGATCTCCTGGCCCCCGCTCGAAGTCAAGGTCACCGTCTCCAAGAAGAT 835
> Ahg327556 jgi|Araly1|327556|fgenesh1_pm.C_scaffold_6002776
Length=846
Score = 756 bits (409), Expect = 0.0
Identities = 679/807 (84%), Gaps = 28/807 (3%)
Strand=Plus/Plus
Query 94 ATGAGCAGTCGTTCGAGTAGAACCGTGTACGTCGGAAACCTTCCTGGCGATATCCGTGAG 153
|||||||| |||||||||||||| | ||||||||||||||||| |||||||| |||||
Sbjct 1 ATGAGCAGCCGTTCGAGTAGAACAATTTACGTCGGAAACCTTCCCGGCGATATTCGTGAA 60
Query 154 AGAGAGGTCGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATTGATTTGAAGGTT 213
||||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 61 AGAGAAGTTGAAGATTTGTTCAGTAAGTATGGACCTGTTGTTCAAATCGATTTGAAAATT 120
Query 214 CCTCCAAGGCCTCCTGGTTATGCATTCGTTGAGTTTGATGATGCTCGGGATGCTGAAGAT 273
|| || ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 121 CCGCCGAGGCCTCCTGGCTATGCATTCGTCGAGTTTGAGGATGCTCGGGATGCTGATGAT 180
Query 274 GCTATTCATGGTCGTGATGGCTATGACTTTGATGGGCATCGTTTGA-GGGTGGAATTGGC 332
|| ||| |||| |||||||| ||||||||||||||||||||||| | |||||||| | ||
Sbjct 181 GCAATTTATGGCCGTGATGGTTATGACTTTGATGGGCATCGTTT-ACGGGTGGAACTAGC 239
Query 333 GCATGGTGGGAGGCGTTCATCAGATGATACTCGGGGTAGTTTCAAtggtggtggccgtgg 392
||||||||||||||||||||| ||||| | || || |||| || ||||||||| |||||
Sbjct 240 TCATGGTGGGAGGCGTTCATCACATGATGCACGCGGCAGTTACAGTGGTGGTGGTCGTGG 299
Query 393 tggtggtcgcggccgtggtgatggtggtagtcgtggGC-----C-ATCTAGGAGATCAGA 446
||| || | | ||| ||| |||||| ||||||||| | |||||||||||| ||
Sbjct 300 CGGTCGT-GATG--GTGTTGACGGTGGTGGTCGTGGGCGTGGACCATCTAGGAGATCCGA 356
Query 447 GTTTCGTGTTCTAGTCACAGGCTTGCCTTCATCTGCTTCTTGGCAAGATCTCAAGGATCA 506
|| || ||| |||| |||| ||||| |||||||| || |||||||| |||||||||||
Sbjct 357 GTACCGCGTTGTAGTGTCAGGTTTGCCGTCATCTGCGTCCTGGCAAGACCTCAAGGATCA 416
Query 507 CATGCGTAAAGGAGGCGATGTCTGTTTCTCGCAAGTGTACCGTGATGCTAGAGGGACAAC 566
||||||||||||||| || || ||||| |||||||||| ||||||| |||||| |||||
Sbjct 417 CATGCGTAAAGGAGGAGAAGTTTGTTTTTCGCAAGTGTTTCGTGATGGTAGAGGTACAAC 476
Query 567 TGGAGTTGTTGATTACACCTGCTATGAGGACATGAAGTATGCGCTGAAAAAGCTCGACGA 626
|||| | || ||||| ||| |||| ||||||||||| |||||| | ||||||||||||||
Sbjct 477 TGGAATAGTAGATTATACCAGCTACGAGGACATGAAATATGCGATAAAAAAGCTCGACGA 536
Query 627 CACAGAGTTTCGAAATGCGTTTTCGAATGGATATGTCCGGGTTAGAGAATATGATTCAAG 686
|||||||||||| ||||||||||| |||||||||| ||| | | |||||||||||
Sbjct 537 CACAGAGTTTCGGAATGCGTTTTCTCATGGATATGTTCGG---A-A---TATGATTCAAG 589
Query 687 GAAGGATTCTAGGAGTCCTAGCCGGGGAAGATCCTATTCTAAGAGCCGCAGCCGCAGCCG 746
|| |||||| ||||| || ||||| |||||||| |||||||||||||||||||| || ||
Sbjct 590 GAGGGATTCGAGGAGCCCCAGCCGTGGAAGATCTTATTCTAAGAGCCGCAGCCGTAGTCG 649
Query 747 TGGACGAAG-CGTGAGCCGAAGCAGGAGCAGAAGCAGGAGCAGGAGCAGAAGTCCCAAGG 805
| || | || ||||| ||| | |||||||||||||||| |||||||||||| ||||
Sbjct 650 CAGCCGGGGGCG-GAGCCCTAGCCGCAGCAGAAGCAGGAGCAAGAGCAGAAGTCCAAAGG 708
Query 806 C-AAAGTCTTCACGTAGGTCCCCTGCAAAATCTACATCAAGATCTCCTGGC-C-C-C-C- 859
| ||| ||||||||||| || ||||||||||||||||| ||||||||| | | | | |
Sbjct 709 CTAAA-TCTTCACGTAGATCACCTGCAAAATCTACATCGAGATCTCCTCACTCTCGCTCC 767
Query 860 -GCTCGAAGTCAAGGTCACCGTCTCCA 885
|||| ||||| ||||||| |||||||
Sbjct 768 CGCTCTAAGTCGAGGTCACTGTCTCCA 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5