BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02850.4
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909946 jgi|Araly1|909946|Al_scaffold_0001_200 913 0.0
> Ahg909946 jgi|Araly1|909946|Al_scaffold_0001_200
Length=1482
Score = 913 bits (494), Expect = 0.0
Identities = 539/561 (96%), Gaps = 2/561 (0%)
Strand=Plus/Plus
Query 256 TCA-TGCCGGACACTCCGGAGTAGCAGCTGGAAATGTTGCATGTGACCAGTATCACAAAT 314
||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 242 TCACTGCAGGACACTCCGGAGTAGCAGCTGGAAGTGTTGCATGTGACCAGTATCACAAAT 301
Query 315 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCTATAT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 302 ACAAGGAAGATGTGAAGCTCATGGCAGACATGGGATTGGAGGCTTACAGATTCTCCATAT 361
Query 375 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATCAATCCCAAGGGGCTACAATACT 434
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 362 CCTGGTCAAGGCTTTTACCAAGTGGAAGAGGACCAATTAATGTCAAGGGGCTACAATACT 421
Query 435 ACAACAATCTTATTGATGAATTGATCACTCATGGAATCCAGCCACATGTTACATTGCACC 494
|||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 422 ACAACAGTCTTATTGATGAATTGATCGCTCATGGAATCCAGCCACACGTTACATTGCACC 481
Query 495 ACTTTGATCTCCCACAGGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 554
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ACTTTGATCTTCCACAAGCCTTAGAAGATGAGTATGGAGGTTGGCTCAGCCAAGAAATCG 541
Query 555 TGAGAGACTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 614
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGAGAGGCTTCACAGCTTATGCAGATACTTGCTTCAAGGAGTTTGGAGATAGAGTGTCAC 601
Query 615 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGAATAA 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 602 ATTGGACTACTATAAACGAGGTCAATGTGTTTGCCCTTGGAGGGTATGACCAGGGATTAA 661
Query 675 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAAAGGAAACTCTTCCA 734
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 662 CACCGCCTGCTCGATGCTCTCCTCCATTTGGACTTAATTGTACCAATGGAAACTCTTCCA 721
Query 735 TTGAGCCTTACATTGCCGTACACAACATGTTGCTCGCACACGCTTCTGCAACAATCTTAT 794
||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct 722 CTGAGCCTTACATTGCCGTACACAACATGTTGCTTGCGCATGCTTCTGCAACAAACTTAT 781
Query 795 ACAAGCAACAGTACAAGGTTC 815
|||||||||| |||||| |||
Sbjct 782 ACAAGCAACAATACAAG-TTC 801
Score = 512 bits (277), Expect = 3e-144
Identities = 323/345 (94%), Gaps = 3/345 (1%)
Strand=Plus/Plus
Query 874 TACACAGTACAAGCAACATGGATCAGTAGGCATTAGCGTATACACATATGGAGCTGTCCC 933
|||| ||| ||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 793 TACA-AGTTCAAGCAACATGGATCAGTAGGCATTAGCGTATACACATACGGTGTTGTCCC 851
Query 934 TTTAACTAACTCTGTGA-AGGATAAGCAGGCAACAGCTAGAGTGAATGACTTCTATATTG 992
|||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 852 TTTAACTAACTCTG-GAGAGGATAAGCAGGCAACTGCTAGAGTAAATGACTTCTATATTG 910
Query 993 GTTGGATTTTACATCCGTTGGTGTTTGGTGATTATCCTGAGACGATGAAGACCAATGTTG 1052
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 911 GTTGGATTTTACATCCGTTGGTGTTTGGCGATTATCCTGAGAGGATGAAGACCAATGTTG 970
Query 1053 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGAACAAGTTAAAGGCGCATTTGATT 1112
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 971 GGTCTAGATTGCCAGCTTTTACAGAGGAGGAGTCAGGACAAGTTAAGGGCGCATTTGATT 1030
Query 1113 TCGTTGGAGTGATAAATTACATGGCGCTTTATGTCAAAGACAACTCTTCCTCTCTGAAAC 1172
|| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1031 TCTTTGGAGTGATAAATTACATGGCACTTTACGTCAAGGACAACTCTTCCTCTCTGAAAC 1090
Query 1173 CTAATCTCCAGGATTTCAACACAGATATAGCCGTGGAAATGACCT 1217
| ||| |||||||||||| |||||| || ||||||||||||||||
Sbjct 1091 CAAATGTCCAGGATTTCACCACAGACATGGCCGTGGAAATGACCT 1135
Score = 440 bits (238), Expect = 2e-122
Identities = 305/335 (91%), Gaps = 14/335 (4%)
Strand=Plus/Plus
Query 1340 ATGACTCCTCACAGCTCATCACTTGTGGACACAACAAGGGTGAAGTATCTGAGCTCGTAC 1399
|||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||| |||
Sbjct 1141 ATGACTCCTCACAGGTCATCACTTGAGGACACAACGAGGGTTAAGTATCTGAGCTCATAC 1200
Query 1400 ATTAAAGCAGTGCTTCATTCACTCAGCAGGAAAGGATCGGACGTAAAAGGGTATTTTCAG 1459
||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1201 ATTGAAGCAGTGCTTCATTCA---ATCAGGAAAGGATCGAACGTAAAAGGGTATTTTCAG 1257
Query 1460 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGGTACGAGAGGAGCTTTGGATTATTG 1519
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1258 TGGTCGTTGATGGATGTGTTTGAGCTATTTGGTGGCTACGAGAAGAGCTTTGGATTATTT 1317
Query 1520 TACGTGGACTTCAAGGATCCTTCTCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1579
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1318 TACGTGAACTTCAAGGATCCTTATCTTAAGAGGAGCCCTAAACTCTCTGCTCACTGGTAC 1377
Query 1580 TCTTCCTTCCTCAAGGGAACACTGCACCATCCATCA-----T-A--TGCTTCGTCTTGAT 1631
||||||||||||| |||||||||||||||||||||| | | |||||| |||||||
Sbjct 1378 TCTTCCTTCCTCATGGGAACACTGCACCATCCATCAGACCATCACATGCTTCATCTTGAT 1437
Query 1632 CATTTGA-T--TTCAATGGTTATAATGCTTAGTTG 1663
||||||| | ||||||| ||||||||||||||||
Sbjct 1438 CATTTGACTACTTCAATGTTTATAATGCTTAGTTG 1472
Score = 183 bits (99), Expect = 3e-45
Identities = 107/111 (96%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 154 CTTCCCTCCAGGCTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 213
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CTTCCCTCTAGACTTTGTCTTTGGCTCTGGCACATCAGCTTATCAGGTGGAAGGAGCTGC 122
Query 214 TGACGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCATGCCGG 264
||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 TGAAGAAGATGGGAGAACTCCTAGCATTTGGGATGTTTTTGCTCACGCCGG 173
Score = 99.0 bits (53), Expect = 1e-19
Identities = 62/66 (94%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 65 ATGAAGTTATTGAGCAATAGTCTAATGTTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 124
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTCTTGAGCAATAGTCTCATGCTCCTTCCTCTGCTGGCTTTGGCTTTAACCGCA 60
Query 125 GT-TTC 129
|| |||
Sbjct 61 GTCTTC 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67724455610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5