BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02860.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470251 jgi|Araly1|470251|fgenesh2_kg.1__205__AT1G02860.1 1932 0.0
> Ahg470251 jgi|Araly1|470251|fgenesh2_kg.1__205__AT1G02860.1
Length=1334
Score = 1932 bits (1046), Expect = 0.0
Identities = 1267/1367 (93%), Gaps = 42/1367 (3%)
Strand=Plus/Plus
Query 156 ATAATTAAGCCAACACGAGACGCAAGAGAG--AGATAGGGA-AAGAGATAAGAGCG-A-C 210
||||| |||||||||||||||||||||||| ||| | | | |||||||||||| | | |
Sbjct 1 ATAATAAAGCCAACACGAGACGCAAGAGAGACAGAGAAGAAGAAGAGATAAGAGAGAACC 60
Query 211 ----TCTGTTTTGTTGATCAAAATCCtttttttttGTTTGAGGGCTGAATTTGTTTGTTG 266
| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 61 TTTATTTGTTTTCTTGATCAAAATCC---TTTTTTGTTCGAGGGCTGAATTTGTTTGTTG 117
Query 267 ATGGTCATCTAAATTTGTAACCTTTATCTGTTTTATTGAGTTGTGAAATTCAGAGAAAAA 326
|||||||||||| ||| ||| | ||||||||| | | ||||
Sbjct 118 ATGGTCATCTAAGTTTATAA-----A----TTTTATTGA-----G----T------AAAA 153
Query 327 ATAAATGAAGTTTTGTAAGAAGTATGAAGAGTACATGCAAGGACAGAAGGAGAAGAAGAA 386
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 154 A-AAATGAAGTTTTGCAAGAAGTATGAAGAGTACATGCAAGGACAGAAGGAGAAGAGGAA 212
Query 387 TCTTCCTGGTGTTGGGTTTAAGAAACTCAAGAAGATTCTCAAGAGATGCAGGAGAAATCA 446
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 213 TCTTCCTGGTGTTGGCTTTAAGAAGCTCAAGAAGATTCTCAAGAGATGCAGAAGAAATCA 272
Query 447 TGTTCCTTCTAGAATTTCTTTTACTGATGCAATCAACCACAATTGTTCTCGTGAATGCCC 506
| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 273 TCTTCCTTCTAGAATGTCTTTTACTGAAACAATCAACCACAACTGTTCTCGTGAATGCCC 332
Query 507 AGTTTGTGATGGGACTTTTTTCCCGGAGCTTCTCAAGGAAATGGAAGATGTTGTTGGATG 566
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 AGTTTGTGATGGAACTTTTTTCCCGGAGCTTCTCAAGGAAATGGAAGATGTTGTTGGATG 392
Query 567 GTTTAACGAGCATGCTCAGAAGCTTCTTGAGCTTCATTTAGCTTCTGGTTTTACAAAGTG 626
|||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 393 GTTTAACGAGAATGCTCAGAAGCTTCTTGAGCTGCATTTAGCTTCTGGTTTCACAAAGTG 452
Query 627 TCTTACTTGGCTCAGAGGCAACAGTCGAAAAAAGGACCATCATGGTTTGATCCAAGAGGG 686
||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct 453 TCTAACTTGGCTCAGAGGCAATAGTCGGAAAAAGGACCATCTTGGTTTGATCCAAGAGGG 512
Query 687 TAAAGATTTGGTTAATTACGCTCTCATCAATGCCGTCGCCATTCGAAAAATCCTCAAGAA 746
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 513 CAAAGACTTGGTTAATTATGCTCTCATCAATGCCGTCGCCATTCGAAAAATCCTCAAGAA 572
Query 747 ATATGACAAGATTCATGAGTCTAGGCAAGGACAAGCGTTTAAGACTCAGGTCCAGAAAAT 806
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 573 ATATGACAAGATTCATGAGTCTAAGCAAGGACACGCGTTTAAGACTCAGGTCCAGAAAAT 632
Query 807 GCGAATAGAAATCCTTCAGTCACCGTGGCTCTGCGAGCTTATGGCGTTTCACATCAATCT 866
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 633 GCGAATCGAAATCCTTCAGTCACCATGGCTCTGCGAGCTTATGGCGTTTCACATCAATCT 692
Query 867 GAAAGAATCTAAGAAGGAATCTGGAGCTACTATAACTTCTCCTCCTCCTCCTGTTCATGC 926
||||||||||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct 693 GAAAGAATCTAAGAAGGAATCTGGAGCTACTGTGGC-T-T-CTCCTCCTCCTGTTCATGC 749
Query 927 ATTGTTTGATGGTTGCGCTTTGACTTTCGACGATGGGAAGCCTTTACTTTCCTGCGAGCT 986
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 ATTGTTCGATGGTTGCGCTTTGACTTTCGACGATGGGAAGCCTTTACTTTCCTGCGAGCT 809
Query 987 CTCTGATTCCGTCAAAGTTGACATTGACTTGACTTGTTCAATATGCCTGGACACGGTGTT 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CTCTGATTCCGTCAAAGTTGACATTGACTTGACTTGTTCAATATGCCTGGACACGGTGTT 869
Query 1047 TGATCCAATATCTCTAACCTGCGGTCACATATATTGCTACATGTGTGCTTGCTCTGCTGC 1106
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TGATCCGATATCTCTAACCTGCGGTCACATATATTGCTACATGTGTGCTTGCTCTGCTGC 929
Query 1107 ATCAGTAAACGTAGTTGATGGCTTGAAAACCGCAGAAGCAACTGAAAAATGCCCGCTTTG 1166
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 ATCAGTAAATGTAATTGATGGCTTGAAAACCGCAGAAGCAACTGAAAAATGCCCGCTTTG 989
Query 1167 CCGTGAGGATGGGGTTTATAAAGGTGCTGTTCACTTGGATGAGCTCAATATTTTACTTAA 1226
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 990 CCGTGAGGATGGGGTTTATAAAGGTGCTGTTCACTTGGATGAGCTCCATATCTTACTCAA 1049
Query 1227 GCGAAGCTGCAGAGACTATTGGGAAGAAAGGCGTAAAACAGAGAGAGCAGAAAGGTTACA 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GCGAAGCTGCAGAGACTATTGGGAAGAAAGGCGTAAAACAGAGAGAGCAGAAAGGTTACA 1109
Query 1287 ACAAGCAAAGGAATATTGGGATTACCAATGCCGAAGCTTCACTGGAATATGATATAGTTT 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1110 ACAAGCAAAGGAATATTGGGATTACCAATGCCGAAGCTTCACTGGAATATGATATAGCTT 1169
Query 1347 GATTTGTGGCTTCTTAAGTGAGATTCTTGATTTTGATAATAAGATAGTAAAAATAATCTT 1406
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1170 GATTTGTGGCTTCTCAAGTGAGATTCTTGATTTTGATAATAAGATAGTAAAGATAATCTT 1229
Query 1407 AATTTTGATTTGCTTTCCTCTGTGAGTGTGTTTCCTTGCACAGAGAGTGACGATTTCTTT 1466
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||
Sbjct 1230 GATTTTGATTTGCTTTCCTCTGTGAGTGTGTTTTCTTGCACAGAGCGTGATGATTTGTTT 1289
Query 1467 GTGAAAAAACTGAAAACTCTTAAGCATTAAATATGGTTTATAAGTTT 1513
|||| | |||| |||||||||||||| |||||| |||||||||||
Sbjct 1290 GTGATCA--CTGATAACTCTTAAGCATTCAATATGATTTATAAGTTT 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5