BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02870.1
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470252 jgi|Araly1|470252|fgenesh2_kg.1__206__AT1G02870.1 1195 0.0
> Ahg470252 jgi|Araly1|470252|fgenesh2_kg.1__206__AT1G02870.1
Length=777
Score = 1195 bits (647), Expect = 0.0
Identities = 712/743 (96%), Gaps = 6/743 (1%)
Strand=Plus/Plus
Query 1 AAACCCTTTCCGCCGCGAACTTCATCTCTCTGCTTTTTCTTCTCCATCGCGAAAATAAAA 60
|||||||||||||||||||| |||||| ||||||||||||||| |||||| |||| ||||
Sbjct 1 AAACCCTTTCCGCCGCGAACATCATCTTTCTGCTTTTTCTTCTACATCGC-AAAAAAAAA 59
Query 61 AA-TCAGTGAGAGAGATGGCGAGGTCGAGAAGAAAGTACAGGAACTCTAGGGCTAAAGTT 119
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 AATTCAGTGAGAGAGATGGCGAGGTCGAGAAGAAAGTATAGGAACTCTAGGGCTAAAGTT 119
Query 120 CGCGTTGCTCTTCCTAAGAAGAACCCTAATATCTTTAAACCAGCTTTCAACTTCCCTCCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 CGCGTTGCTCTTCCTAAGAAGAACCCTAATATCTTTAAACCAGCTTTCAATTTCCCTCCC 179
Query 180 AAGCTCCGCGCTCTCATGGGAGACGATGTCCCTGAATGGGACGATCAAGCTAGCGTTATC 239
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGCTCCGTGCTCTCATGGCCGACGATGTCCCTGAATGGGACGATCAAGCTAGCGTTATC 239
Query 240 CAGAACTACAAATCCTTTGGCGTCATCTCTAACCCTAATTTGCTTGGTATCCGAGCTCGT 299
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 240 CAGAACTACAAATCCTTTGGCGTCCTCTCTAACCCTAATTTGCTTGGTATCCGATCTCGC 299
Query 300 ACCGACCATATGATTCAGGATGATTCCCTCAACGTTCCTCCACCTGTAGAGCCACCGACT 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACTGACCATATGATTCAGGATGATTCCCTCAACGTTCCTCCACCTGTAGAGCCACCGACT 359
Query 360 GATGATCCTATTGCTAAGGAGTTCGAGCCCATTGATTCTGGAAGCGAACTTGAGGAAGAC 419
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 360 GATGATCCTATTGCTAAGGAGTTCGAGCCCATCGATTCTGGAAGCGAACTCGAGGAAGAC 419
Query 420 GATCTTAAGACAGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCG 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATCTTAAGACTGCATTGGGGAAGCAAAGAAAAGATGGAAAGAGTGCTCCTTTACAGCCG 479
Query 480 CTTACCACTATGCAACGCACACATATAAGGCGTTTGGTGGAGAAACATGGTGATGACATT 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 CTTACCACTATGCAACGCACACATATAAGACGTTTGGTGGAGAAACATGGTGATGACATT 539
Query 540 GAGGGCATGTACCGAGACAGGAAGCTAAACTCGATGCAGCATTCGGTTGCAACACTTCGA 599
|||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 540 GAGGGCATGTACCGTGACAGAAAGCTAAACTCAATGCAGCATACGGTTGCAACACTTCGA 599
Query 600 AAGCTATGTACGAGATATCAGATTTACAAAGACAAGAACCCGATTTTAGTTTCatgatga 659
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 AAGCTATGCACGAGATATCAGATTTACAAAGACAAGAACCCGATTTTAGTTCCATGATGT 659
Query 660 tgatgatga--tCTCTGTATCCTT-TGTTCAATTTTGTTATAAACTTGCAACAACACTAC 716
||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 660 TGATGATGAGGTCTTTGTATC-TTGTGTTCAATTTTGTTATAAACTTGCAACAACACTAC 718
Query 717 AATGGTTATGAAGTTTCTATAAA 739
|||||||||||||||||||||||
Sbjct 719 AATGGTTATGAAGTTTCTATAAA 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31184546106
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5