BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02880.3
Length=1169
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470256 jgi|Araly1|470256|fgenesh2_kg.1__210__AT1G02880.2 1393 0.0
Ahg935420 jgi|Araly1|935420|scaffold_403408.1 239 4e-62
> Ahg470256 jgi|Araly1|470256|fgenesh2_kg.1__210__AT1G02880.2
Length=1129
Score = 1393 bits (754), Expect = 0.0
Identities = 1000/1110 (90%), Gaps = 51/1110 (5%)
Strand=Plus/Plus
Query 60 AGCCATGGATGTTATGATTCACTCTTCAAGCTTTCTCCTCCCTTGCG-A---CG-AAAC- 113
|||||||||||||||| ||||||||||||||||||||||||||| || | || ||
Sbjct 62 AGCCATGGATGTTATGCTTCACTCTTCAAGCTTTCTCCTCCCTT-CGAACCCCGTCGACG 120
Query 114 -TAGTACAGGGACGAGATACGCTCTCGTTGTTCTGAACCAGAGTTTGCCACGATTCACTC 172
|| |||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 121 ATACTACAGGGACGAGATACGCTCTCATTGTTCTTAACCAGAGTTTACCACGATTCACTC 180
Query 173 CTCTTCTCTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 232
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTTCTTTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 240
Query 233 ACGACGAATTGCCTCTCTTCTTCCCTAATGAAGACGCTTTGGCCATTCGAAACAGGTATA 292
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ACGACGAATTACCTCTCTTCTTCCCTCATGAAGACGCTTTGGCCATTCGAAACAGGTATA 300
Query 293 AGCCGGATGTTATCAAAGGAGATATGGATTCTATACGTCGTGACGTCCTCGACTTTTATA 352
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 301 AGCCGGATGTTATCAAGGGAGATATGGATTCTATTCGGCGTGACGTCCTCGACTTTTATG 360
Query 353 TAAACTTGGGAACTAAGGTTATAGATGAATCTCATGATCAAGACACCACAGATCTTGATA 412
| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 361 TTAACTTGGGAACTAAAGTTATAGATGAATCTCAAGATCAAGATACCACTGATCTTGATA 420
Query 413 AATGCATTTTGTATATCCGTCACTCTACTTTGAATCAAGAGACTTCCGGACTCCAGATTC 472
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 421 AATGCATTTTGTATATCCGTGACTCTACTTTGAATCAAGAGACTTCCAGACTCCAGATTC 480
Query 473 TTGCCACTGGAGCACTTGGAGGAAGATTTGATCATGAAGCCGGTAATCTCAACGTCTTAT 532
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TTGCCACTGGAGCACTTGGTGGAAGATTTGATCATGAAGCCGGTAATCTCAATGTCTTAT 540
Query 533 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGACGATTGCCTCATCCAACTCCTTC 592
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGATGATTGCCTCATCCAACTCCTTC 600
Query 593 CAAAGACTCATCGACATGAAATACATATTCAGTCTTCTCTAGAAGGGCCTCACTGTGGAC 652
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 601 CAAAGAGTCATCGACATGAAATACATATTCAGTCTTCTCTTGAAGGACCTCACTGTGGAC 660
Query 653 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTCAATGGGATCTCA 712
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTAAATGGGATCTCA 720
Query 713 GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA 772
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 CCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCAAACTTGGTTAAAGAAGAGA 780
Query 773 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 840
Query 833 TTTCCATACAAGACCATACACCTTAGGCCCGGTAACAAAACACACTTTAGTATATTATAC 892
|||||||| ||||||||||||||||||| |||| | ||| | | |||||||
Sbjct 841 TTTCCATAGAAGACCATACACCTTAGGCGCGGT------A-ACA----A--A-ATTATAC 886
Query 893 GCTACTATGATGTTCCTGATGCAACGAACTAGTTCAACATTATTGTGTTGATTTGTTGTT 952
|| ||||| || ||||||||||| |||| || ||||||||||||||||||||||||| ||
Sbjct 887 GCCACTATTATATTCCTGATGCATCGAATTACTTCAACATTATTGTGTTGATTTGTT-TT 945
Query 953 CACTGTACTAGCTAATAATACTTGTACCATTACTGTCGTTATACATTAAGATGCTTTTTT 1012
|||||||| ||| ||| |||| || |||| | | || |||| | | | |
Sbjct 946 CACTGTACCAGC-AATGATACCTG-----TTAC-CT-G-TA-CCATT---A--C---TGT 987
Query 1013 CTTTGGTTCTGTCAT-TGTTTATGTGGGGCTTTGTTGATTTGTC-GTACTCAAAATTGTG 1070
| ||| | ||| | |||| | ||||| | |||||| ||||||||||||||
Sbjct 988 C----GTTAT-ACATAAGATTAT-TATTTCTTTG--GTTTTGTCATTACTCAAAATTGTG 1039
Query 1071 ACTGGATGTTGGTTAGATATTGGAATCTACTTGTGCGGTATATGAGAAAAGACAAAATTC 1130
| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1040 ATTGGATGTTGGTTAGATATTGGAATCTACTTGTGCCGTATATGAGAACAGACAAAATTC 1099
Query 1131 AAAAGGTGAATGACTACGATTGAGCATATG 1160
|||||||||||||||||||| | |||||||
Sbjct 1100 AAAAGGTGAATGACTACGATAGGGCATATG 1129
> Ahg935420 jgi|Araly1|935420|scaffold_403408.1
Length=217
Score = 239 bits (129), Expect = 4e-62
Identities = 141/147 (96%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 713 GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA 772
||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 52 GCAGCACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTAAAAGAAGAGA 111
Query 773 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 832
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AAATCATAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAA 171
Query 833 TTTCCATACAAGACCATACACCTTAGG 859
||||| |||||||||||||||||||||
Sbjct 172 TTTCCGTACAAGACCATACACCTTAGG 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43612617048
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5