BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02880.3 Length=1169 Score E Sequences producing significant alignments: (Bits) Value Ahg470256 jgi|Araly1|470256|fgenesh2_kg.1__210__AT1G02880.2 1393 0.0 Ahg935420 jgi|Araly1|935420|scaffold_403408.1 239 4e-62 > Ahg470256 jgi|Araly1|470256|fgenesh2_kg.1__210__AT1G02880.2 Length=1129 Score = 1393 bits (754), Expect = 0.0 Identities = 1000/1110 (90%), Gaps = 51/1110 (5%) Strand=Plus/Plus Query 60 AGCCATGGATGTTATGATTCACTCTTCAAGCTTTCTCCTCCCTTGCG-A---CG-AAAC- 113 |||||||||||||||| ||||||||||||||||||||||||||| || | || || Sbjct 62 AGCCATGGATGTTATGCTTCACTCTTCAAGCTTTCTCCTCCCTT-CGAACCCCGTCGACG 120 Query 114 -TAGTACAGGGACGAGATACGCTCTCGTTGTTCTGAACCAGAGTTTGCCACGATTCACTC 172 || |||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct 121 ATACTACAGGGACGAGATACGCTCTCATTGTTCTTAACCAGAGTTTACCACGATTCACTC 180 Query 173 CTCTTCTCTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 232 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTCTTCTTTGGGAACATGCAAAACTTCGTCTCTGTGCTGATGGAGGCGCTAATCGCATCT 240 Query 233 ACGACGAATTGCCTCTCTTCTTCCCTAATGAAGACGCTTTGGCCATTCGAAACAGGTATA 292 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 ACGACGAATTACCTCTCTTCTTCCCTCATGAAGACGCTTTGGCCATTCGAAACAGGTATA 300 Query 293 AGCCGGATGTTATCAAAGGAGATATGGATTCTATACGTCGTGACGTCCTCGACTTTTATA 352 |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct 301 AGCCGGATGTTATCAAGGGAGATATGGATTCTATTCGGCGTGACGTCCTCGACTTTTATG 360 Query 353 TAAACTTGGGAACTAAGGTTATAGATGAATCTCATGATCAAGACACCACAGATCTTGATA 412 | |||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 361 TTAACTTGGGAACTAAAGTTATAGATGAATCTCAAGATCAAGATACCACTGATCTTGATA 420 Query 413 AATGCATTTTGTATATCCGTCACTCTACTTTGAATCAAGAGACTTCCGGACTCCAGATTC 472 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 421 AATGCATTTTGTATATCCGTGACTCTACTTTGAATCAAGAGACTTCCAGACTCCAGATTC 480 Query 473 TTGCCACTGGAGCACTTGGAGGAAGATTTGATCATGAAGCCGGTAATCTCAACGTCTTAT 532 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 481 TTGCCACTGGAGCACTTGGTGGAAGATTTGATCATGAAGCCGGTAATCTCAATGTCTTAT 540 Query 533 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGACGATTGCCTCATCCAACTCCTTC 592 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 541 ATCGATATCCAGATACAAGGATAGTCCTTTTATCTGATGATTGCCTCATCCAACTCCTTC 600 Query 593 CAAAGACTCATCGACATGAAATACATATTCAGTCTTCTCTAGAAGGGCCTCACTGTGGAC 652 |||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 601 CAAAGAGTCATCGACATGAAATACATATTCAGTCTTCTCTTGAAGGACCTCACTGTGGAC 660 Query 653 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTCAATGGGATCTCA 712 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 661 TCATACCCATTGGAACTCCATCTGCTAAAACCACAACCTCAGGGCTTAAATGGGATCTCA 720 Query 713 GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA 772 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 721 CCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCAAACTTGGTTAAAGAAGAGA 780 Query 773 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 840 Query 833 TTTCCATACAAGACCATACACCTTAGGCCCGGTAACAAAACACACTTTAGTATATTATAC 892 |||||||| ||||||||||||||||||| |||| | ||| | | ||||||| Sbjct 841 TTTCCATAGAAGACCATACACCTTAGGCGCGGT------A-ACA----A--A-ATTATAC 886 Query 893 GCTACTATGATGTTCCTGATGCAACGAACTAGTTCAACATTATTGTGTTGATTTGTTGTT 952 || ||||| || ||||||||||| |||| || ||||||||||||||||||||||||| || Sbjct 887 GCCACTATTATATTCCTGATGCATCGAATTACTTCAACATTATTGTGTTGATTTGTT-TT 945 Query 953 CACTGTACTAGCTAATAATACTTGTACCATTACTGTCGTTATACATTAAGATGCTTTTTT 1012 |||||||| ||| ||| |||| || |||| | | || |||| | | | | Sbjct 946 CACTGTACCAGC-AATGATACCTG-----TTAC-CT-G-TA-CCATT---A--C---TGT 987 Query 1013 CTTTGGTTCTGTCAT-TGTTTATGTGGGGCTTTGTTGATTTGTC-GTACTCAAAATTGTG 1070 | ||| | ||| | |||| | ||||| | |||||| |||||||||||||| Sbjct 988 C----GTTAT-ACATAAGATTAT-TATTTCTTTG--GTTTTGTCATTACTCAAAATTGTG 1039 Query 1071 ACTGGATGTTGGTTAGATATTGGAATCTACTTGTGCGGTATATGAGAAAAGACAAAATTC 1130 | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1040 ATTGGATGTTGGTTAGATATTGGAATCTACTTGTGCCGTATATGAGAACAGACAAAATTC 1099 Query 1131 AAAAGGTGAATGACTACGATTGAGCATATG 1160 |||||||||||||||||||| | ||||||| Sbjct 1100 AAAAGGTGAATGACTACGATAGGGCATATG 1129 > Ahg935420 jgi|Araly1|935420|scaffold_403408.1 Length=217 Score = 239 bits (129), Expect = 4e-62 Identities = 141/147 (96%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 713 GCAACACTGAGATGAGATTTGGTGGGTTGATAAGTACATCCAACTTGGTTAAAGAAGAGA 772 ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 52 GCAGCACTGAGATGAGATTTGGTGGGTTGATAAGTACATCGAACTTGGTAAAAGAAGAGA 111 Query 773 AAATCACAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAC 832 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 112 AAATCATAGTCGAATCGGATTCGGATCTTCTCTGGACTATATCCATCAAGAAAACAGGAA 171 Query 833 TTTCCATACAAGACCATACACCTTAGG 859 ||||| ||||||||||||||||||||| Sbjct 172 TTTCCGTACAAGACCATACACCTTAGG 198 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43612617048 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5