BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02900.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470261 jgi|Araly1|470261|fgenesh2_kg.1__215__AT1G02900.1 745 0.0
> Ahg470261 jgi|Araly1|470261|fgenesh2_kg.1__215__AT1G02900.1
Length=555
Score = 745 bits (403), Expect = 0.0
Identities = 512/563 (91%), Gaps = 13/563 (2%)
Strand=Plus/Plus
Query 3 AAAATGGACAAGTCCTTTACTCTGTTCTTAACTCTTACGATTCTCGTCGTCTTCATCATC 62
||||||| ||||||||| |||||||||||| ||||||||||||| | | |||||||||
Sbjct 1 AAAATGGCCAAGTCCTTCCCTCTGTTCTTAAGTCTTACGATTCTCATAATTTTCATCATC 60
Query 63 TCTTCACCTCCGGTCCAAGCCGGCTTCGCCAACGACCTCGGTGGTGTAGCATGGGCTACG 122
||||||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||
Sbjct 61 TCTTCACCTCCGGTCCAAGCCGGCTTCGCCAACAACCTCGATGGTCTAGAATGGGCTACG 120
Query 123 ACTGGAGACAATGGTTCAGGCTGCCACGGTTCAATAGCAGAGTGTATCGGGGCGGAGGAA 182
| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 AATGGAGTCCATGGTTCAGGCTGCCACGGTTCAATAGCAGAGTGTATCGGAGCGGAGGAA 180
Query 183 GAAGAAATGGACTCAGAGATCAATAGAAGAATATTGGCGACCACAAAATACATAAGCTAT 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GAAGAAATGGACTCAGAGATCAATAGAAGAATATTGGCGACCACAAAATACATAAGTTAT 240
Query 243 CAGTCTTTGAAACGGAACAGTGTGCCTTGTTCAAGAAGAGGTGCGTCTTATTACAATTGT 302
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CAATCTTTGAAACGGAACAGTGTACCTTGTTCAAGAAGAGGTGCGTCTTATTACAATTGT 300
Query 303 CAGAACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCAAAATTGCTCGTTGCAGG 362
| |||||||||||||||||||||||||||||||||||||||| |||| | || ||||||
Sbjct 301 CGGAACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCGCAATTTCGCGATGCAGG 360
Query 363 AGTTAGACCTACAAACAA-GAAAGCTAT----CTTCTTGATCTTGACTTATGTTTTCTTT 417
||||||| |||||| || ||| ||||| ||||||||||||||||||||||||||||
Sbjct 361 AGTTAGAATTACAAAAAAAGAAGGCTATATATCTTCTTGATCTTGACTTATGTTTTCTTT 420
Query 418 GATCCATCAAGCGTTTTCATTTTAATTAAATCTTTAAATATTCATCATGTCTCTGCACAA 477
||||||||||| ||||| ||||| | | | | |||||||||||||||||||||||||
Sbjct 421 GATCCATCAAGTGTTTTTATTTT--T-A--T-T--AAATATTCATCATGTCTCTGCACAA 472
Query 478 TAGTAAAGACCTATGTTTTGATCAAATTGGGTTGATTTGTAATATTTTATGTGAATAATC 537
||||||| |||||||||||||||||| |||||| ||||| ||||| |||||||||||||
Sbjct 473 TAGTAAAAACCTATGTTTTGATCAAACCGGGTTGCTTTGTTATATTGTATGTGAATAATC 532
Query 538 ATGGTCTTAATGATCCATGAAGT 560
| |||||||||||||||||||||
Sbjct 533 AGGGTCTTAATGATCCATGAAGT 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5