BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02910.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918952 jgi|Araly1|918952|scaffold_100233.1 2266 0.0
> Ahg918952 jgi|Araly1|918952|scaffold_100233.1
Length=1403
Score = 2266 bits (1227), Expect = 0.0
Identities = 1345/1403 (96%), Gaps = 4/1403 (0%)
Strand=Plus/Plus
Query 3 GTAAGCGTAGAAGAAAATTGAATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTC 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAACGTAGAAGAAAATTGAATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTC 60
Query 63 CCCCGCCGCATCTCGAACCTTTACTCGAGAGTTAAGCAACGAAGGCCATGGCTGCCACCA 122
| | ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| |
Sbjct 61 CTCTGCCGCGTCTCGAACCCTTACTCGAGAGTTAAGCAACGACGGCCATGGCTGCCACAA 120
Query 123 GGAGACGCGACCCTTTTCAATTCTCGCCGGAATTGGGATTCCCATCT-GTTTGTTTACGC 181
||| |||| ||||||||| | |||| ||||||||||||||||||||| ||| ||| |||
Sbjct 121 GGAAACGCTACCCTTTTCCACTCTCACCGGAATTGGGATTCCCATCTCCTTT-TTTTCGC 179
Query 182 TTCCTCTTCTTCTTCTCCGTCGTCGTCGCCTCCGTCTCCAAATTCACCGACGGATGATCT 241
|||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||||
Sbjct 180 TTCCTCTTCTTCTTCTCCTTCGTCGTCGCCTTCGCCTCCAAATTCGCCGACGGATGATCT 239
Query 242 CACGGCAGAGTTGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTGAAAGA 301
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CACGGCAGAGTCGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTCAAAGA 299
Query 302 TGCTCTTGTTCAGTTTGAAACTGCACTGAGTTTGGCTCCAAATCCTATTGAGTCACAAGC 361
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 300 TGCTCTTGTTCAGTTTGAAACTGCGCTGAGTTTGGATCCAAATCCTATTGAGTCACAAGC 359
Query 362 TGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGaaaaaaaGCTG-TGG 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 360 AGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGAAAAAAGGCTGCT-G 418
Query 421 ATTGCTTGCGAATTGCGTTGAGAGATTATAATCTGAAGTTTGCCACGATTCTTAACGATC 480
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 419 ATTGCTTGCGAATTGCGTTAAGAGATTATAATCTGAAGTTTGCCACTATTCTTAATGATC 478
Query 481 CTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGT 538
Query 541 TAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTAC 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 539 TAGGCGGGGAAGATATTGGCGATAGTTTCCGGAGAGATCTGAAACTTATCAGTGAAGTAC 598
Query 601 GAGCACCGTTTCGTGGCGTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTA 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGCACCGTTTCGTGGCTTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTA 658
Query 661 TCTCAATGTTCTTTACCGTACCAAGACTGGTTCAGGCAATTAGAGGCGGTGATGGTGCTC 720
|||||| |||||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 659 TCTCAACATTCTTTACTGTACCAAGACTGATTCAGGCAATCAGAGGCGGTGATGGTGCTC 718
Query 721 CAAATCTTCTGGAAACTACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTATGG 780
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 CAGATCTTCTGGAAACGACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTCTGG 778
Query 781 TTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAG 840
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 779 TTTCACTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTACAAATAACTCGAG 838
Query 841 ACGAAACTCTTTCCCGGTTGCCTCTACGCCTGTCAACCAACCGCGTTGTTGAACTTGTGC 900
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 839 ACGAAACTCTCTCCCGGTTGCCTCTACGCCTGTCAACCAACCGTGTTGTTGAACTTGTGC 898
Query 901 AGCTAAGGGATACAGTTCGACCTGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTTG 960
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 899 AGCTAAGGGATACAGTTCGACCCGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTCG 958
Query 961 CGATGCAAAAAGCAGATAGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTC 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CGATGCAAAAAGCAGATCGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTC 1018
Query 1021 CTGTGGTATGGGGTGAACGCAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTT 1080
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGTGGTATGGGGTGAACGTAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTT 1078
Query 1081 CAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTTGATACACGGGCTCAATCGG 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 CAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTCGATACACGGGCTCAATCGG 1138
Query 1141 TTGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCCGAGACTGTTTCGCCTG 1200
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 TAGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCTGAGACTGTTTCGCCTG 1198
Query 1201 GTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATG 1258
Query 1261 ATGTGTACATCATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGG 1320
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACGTGTACATTATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGG 1318
Query 1321 ATTGGGCTGAGATATCGAAGGAGTTACCGCCAATGGATGACGTTCTCAGCAAGTTAGAAA 1380
||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||
Sbjct 1319 ATTGGGCTGAGATATCGAAGGAGTTGCCGACGATGGATGACGTGCTCAGCAAGTTAGAAA 1378
Query 1381 GATGAAACTGTGAAGCTTTCTTA 1403
|||||||||||||||||||||||
Sbjct 1379 GATGAAACTGTGAAGCTTTCTTA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5