BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G02910.1 Length=1557 Score E Sequences producing significant alignments: (Bits) Value Ahg918952 jgi|Araly1|918952|scaffold_100233.1 2266 0.0 > Ahg918952 jgi|Araly1|918952|scaffold_100233.1 Length=1403 Score = 2266 bits (1227), Expect = 0.0 Identities = 1345/1403 (96%), Gaps = 4/1403 (0%) Strand=Plus/Plus Query 3 GTAAGCGTAGAAGAAAATTGAATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTC 62 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTAAACGTAGAAGAAAATTGAATGGCTGTGGCTACAGCTCCGTCGCTAAACCGCCATTTC 60 Query 63 CCCCGCCGCATCTCGAACCTTTACTCGAGAGTTAAGCAACGAAGGCCATGGCTGCCACCA 122 | | ||||| ||||||||| |||||||||||||||||||||| ||||||||||||||| | Sbjct 61 CTCTGCCGCGTCTCGAACCCTTACTCGAGAGTTAAGCAACGACGGCCATGGCTGCCACAA 120 Query 123 GGAGACGCGACCCTTTTCAATTCTCGCCGGAATTGGGATTCCCATCT-GTTTGTTTACGC 181 ||| |||| ||||||||| | |||| ||||||||||||||||||||| ||| ||| ||| Sbjct 121 GGAAACGCTACCCTTTTCCACTCTCACCGGAATTGGGATTCCCATCTCCTTT-TTTTCGC 179 Query 182 TTCCTCTTCTTCTTCTCCGTCGTCGTCGCCTCCGTCTCCAAATTCACCGACGGATGATCT 241 |||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||| Sbjct 180 TTCCTCTTCTTCTTCTCCTTCGTCGTCGCCTTCGCCTCCAAATTCGCCGACGGATGATCT 239 Query 242 CACGGCAGAGTTGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTGAAAGA 301 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 240 CACGGCAGAGTCGTGCGTCAATACTGGTCTTGATCTCTTTAAGAGAGGACGGGTCAAAGA 299 Query 302 TGCTCTTGTTCAGTTTGAAACTGCACTGAGTTTGGCTCCAAATCCTATTGAGTCACAAGC 361 |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 300 TGCTCTTGTTCAGTTTGAAACTGCGCTGAGTTTGGATCCAAATCCTATTGAGTCACAAGC 359 Query 362 TGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGaaaaaaaGCTG-TGG 420 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 360 AGCTTACTATAACAAAGCATGTTGTCATGCTTACCGGGGCGAAGGAAAAAAGGCTGCT-G 418 Query 421 ATTGCTTGCGAATTGCGTTGAGAGATTATAATCTGAAGTTTGCCACGATTCTTAACGATC 480 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 419 ATTGCTTGCGAATTGCGTTAAGAGATTATAATCTGAAGTTTGCCACTATTCTTAATGATC 478 Query 481 CTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CTGATTTAGCATCCTTTCGCGCATTACCCGAGTTTAAGGAGCTGCAAGAAGAGGCTAGGT 538 Query 541 TAGGCGGGGAAGATATTGGCGATAATTTCCGGAGAGATCTGAAACTTATCAGTGAAGTAC 600 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 539 TAGGCGGGGAAGATATTGGCGATAGTTTCCGGAGAGATCTGAAACTTATCAGTGAAGTAC 598 Query 601 GAGCACCGTTTCGTGGCGTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTA 660 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 599 GAGCACCGTTTCGTGGCTTTAGAAAATTCTTTTATTTTGCATTTGCAGCAGCAGCGGGTA 658 Query 661 TCTCAATGTTCTTTACCGTACCAAGACTGGTTCAGGCAATTAGAGGCGGTGATGGTGCTC 720 |||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||| Sbjct 659 TCTCAACATTCTTTACTGTACCAAGACTGATTCAGGCAATCAGAGGCGGTGATGGTGCTC 718 Query 721 CAAATCTTCTGGAAACTACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTATGG 780 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 719 CAGATCTTCTGGAAACGACGGGAAATGCTGCAATTAACATTGGAGGTATTGTTGTTCTGG 778 Query 781 TTTCATTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTTCAAATAACTCGAG 840 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 779 TTTCACTGTTCCTTTGGGAAAACAAGAAAGAGGAAGAACAAATGGTACAAATAACTCGAG 838 Query 841 ACGAAACTCTTTCCCGGTTGCCTCTACGCCTGTCAACCAACCGCGTTGTTGAACTTGTGC 900 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 839 ACGAAACTCTCTCCCGGTTGCCTCTACGCCTGTCAACCAACCGTGTTGTTGAACTTGTGC 898 Query 901 AGCTAAGGGATACAGTTCGACCTGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTTG 960 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 899 AGCTAAGGGATACAGTTCGACCCGTTATTCTAGCTGGGAAAAAAGAGACTGTTACACTCG 958 Query 961 CGATGCAAAAAGCAGATAGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTC 1020 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 959 CGATGCAAAAAGCAGATCGGTTCAGAACCGAGCTCCTAAGACGAGGTGTTCTCTTAGTTC 1018 Query 1021 CTGTGGTATGGGGTGAACGCAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTT 1080 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CTGTGGTATGGGGTGAACGTAAAACACCGGAAATCGAGAAAAAAGGTTTTGGAGCTTCTT 1078 Query 1081 CAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTTGATACACGGGCTCAATCGG 1140 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1079 CAAAGGCAGCTACATCTCTTCCTTCAATTGGGGAAGATTTCGATACACGGGCTCAATCGG 1138 Query 1141 TTGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCCGAGACTGTTTCGCCTG 1200 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1139 TAGTAGCCCAATCGAAGCTGAAAGGTGAAATCAGGTTCAAGGCTGAGACTGTTTCGCCTG 1198 Query 1201 GTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATG 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GTGAATGGGAAAGGTGGATAAGAGATCAACAGATATCTGAAGGAGTTAACCCGGGCGATG 1258 Query 1261 ATGTGTACATCATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGG 1320 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 ACGTGTACATTATACTGCGGTTAGATGGTCGAGTCCGCAGATCGGGTAGAGGGATGCCGG 1318 Query 1321 ATTGGGCTGAGATATCGAAGGAGTTACCGCCAATGGATGACGTTCTCAGCAAGTTAGAAA 1380 ||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||| Sbjct 1319 ATTGGGCTGAGATATCGAAGGAGTTGCCGACGATGGATGACGTGCTCAGCAAGTTAGAAA 1378 Query 1381 GATGAAACTGTGAAGCTTTCTTA 1403 ||||||||||||||||||||||| Sbjct 1379 GATGAAACTGTGAAGCTTTCTTA 1401 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58316165095 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5