BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02920.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470263 jgi|Araly1|470263|fgenesh2_kg.1__217__AT1G02920.1 1203 0.0
Ahg470264 jgi|Araly1|470264|fgenesh2_kg.1__218__AT1G02930.1 994 0.0
> Ahg470263 jgi|Araly1|470263|fgenesh2_kg.1__217__AT1G02920.1
Length=831
Score = 1203 bits (651), Expect = 0.0
Identities = 705/732 (96%), Gaps = 0/732 (0%)
Strand=Plus/Plus
Query 60 TTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAGT 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TTAACAAATGGGAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAGT 63
Query 120 TCTCATCGCTCTTCACGAGAAGAATCTCGACTTTGAATTCGTTCATATCGAGCTCAAAGA 179
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 64 TCTCATCGCTCTACACGAGAAGAATCTCGACTTCGAATTCGTTCATATCGAGCTCAAAGA 123
Query 180 TGGTGAACACAAGAAAGAGCCTTTCATCTTCCGCAACCCTTTTGGTAAAGTTCCAGCCTT 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 TGGTGAACACAAGAAAGAGCCTTTCATCTTTCGCAACCCTTTTGGTAAAGTTCCAGCCTT 183
Query 240 TGAAGATGGAGACTTCAAGCTTTTCGAATCAAGAGCAATCACTCAATACATAGCTCATTT 299
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 184 TGAAGATGGAGACTTGAAGCTTTTCGAATCAAGAGCAATTACTCAATACATAGCTCATTT 243
Query 300 TTACTCAGACAAAGGAAACCAACTTGTCTCCCTTGGCTCCAAGGACATTGCGGGCATAGC 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 244 TTACTCAGACAAAGGAAACCAACTTGTCTCCCTTGGCTCCAAGGCCATTGCGGTCATAGC 303
Query 360 CATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTTGGGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTTGGGA 363
Query 420 GCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAAGAAGA 479
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 364 GCAAGTCTTTAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAGGAAGA 423
Query 480 GGCTAAGCTAGCCAAGGTCCTCGATGTTTACGAACACAGGCTTGGTGAGTCCAAGTATTT 539
|| |||| ||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 424 GGTTAAGTTAGCCAAAGTTCTCGATGTTTACGAACACAGGCTTGGTGAGTCTAAGTATTT 483
Query 540 GGCTTCTGATAAATTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAGTACTTGCT 599
||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 484 GGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACTTGCT 543
Query 600 TGGTACACCAACTAAGAAACTCTTTGACGAGCGTCCACATGTCAGTGCTTGGGTTGCTGA 659
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 544 TGGTACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGTGCTTGGGTTGCTGA 603
Query 660 CATCACTTCTAGGCCTTCTGCTAAGAAGGTTCTTTAAGTGACTCACAAACTGTTAATCAG 719
||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||||
Sbjct 604 TATCACTTCTAGGCCTTCTGCTCAGAAGGTTCTTTAAGCGAATCAAAAACTGTTAATCAG 663
Query 720 AAGATTGAATAAAGTGGCGATGACCTCATTGCCCTAATTCTCATAAACAATAAAAGTGGC 779
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 664 AAGATTGAATAAAGTGGCGATGACCTCATTGCCCCAATTCTCATAAACAATAAAAGTGGC 723
Query 780 GATGACCTAATT 791
||||||||||||
Sbjct 724 GATGACCTAATT 735
> Ahg470264 jgi|Araly1|470264|fgenesh2_kg.1__218__AT1G02930.1
Length=918
Score = 994 bits (538), Expect = 0.0
Identities = 714/792 (90%), Gaps = 39/792 (5%)
Strand=Plus/Plus
Query 1 ATCAACCACAAAGATCTCTCTACTTCAATAAATCTCCACCTTGC-TTTAAGAAC------ 53
|||||||||||||||||||||||||||| |||||||||| || | |||||||||
Sbjct 125 ATCAACCACAAAGATCTCTCTACTTCAACAAATCTCCACATTACTTTTAAGAACAAAAAA 184
Query 54 --AA-AGTC-TTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCA 109
|| || | ||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 185 AAAACAG-CGTTAACTAATGGCAGGAATCAAAGTTTTTGGCCACCCAGCTTCCACAGCCA 243
Query 110 CTAGAAGAGTTCTCATCGCTCTTCACGAGAAGAATCTCGACTTTGAATTCGTTCATATCG 169
| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 244 CGAGAAGAGTTCTCATCGCTCTACACGAGAAGAATGTCGACTTTGAATTCGTTCATGTCG 303
Query 170 AGCTCAAAGATGGTGAACACAAGAAAGAGCCTTTCAT-CTTCCGCAACCCTTTTGGTAAA 228
||||||||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||
Sbjct 304 AGCTCAAAGATGGTGAACACAAGAAAGAGCCTTACATCCTT-CGCAACCCCTTTGGTAAA 362
Query 229 GTTCCAGCCTTTGAAGATGGAGACTTCAAGCTTTTCGAATCAAGAGCAATCACTCAATAC 288
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 363 GTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAGTCAAGAGCAATCACTCAATAC 422
Query 289 ATAGCTCAT-TTTTACTCAGACAAAGGAAACCAA-CTTGTCTC-CCTTGGCTCCAAGGAC 345
||||||||| || ||||||||||||||| ||| ||| |||| | ||| ||| |||
Sbjct 423 ATAGCTCATGAATT-CTCAGACAAAGGAAA-CAACCTTCTCTCAGC-TGG---CAAAGAC 476
Query 346 ATTGCGGGCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCA 405
|| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 ATGGCGATCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGATCCAGTTGGTTCC 536
Query 406 AAGCTTGTTTGGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTT 465
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 537 AAGCTTGTTTGGGAGCAAGTCTTGAAGCCTTTGTATGGTATGACCACAGACAAAACCGTT 596
Query 466 GTTGAAGAAGAAGAGGCTAAGCTAGCCAAGGTCCTCGATGTTTACGAACACAGGCTTGGT 525
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 597 GTTGAAGAAGAAGAGGCTAAGTTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTGGT 656
Query 526 GAGTCCAAGTATTTGGCTTCTGATAAATTCACTTTGGTCGATCTTCACACTATCCCTGTG 585
||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||||
Sbjct 657 GAGTCTAAGTATTTGGCTGCTGATCACTTCACTTTGGTCGATCTTCACACTATCCCTGTG 716
Query 586 ATTCAGTACTTGCTTGGTACACCAACTAAGAAACTCTTTGACGAGCGTCCACATGTCAGT 645
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 717 ATTCAGTACTTGCTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGT 776
Query 646 GCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCT-AAGAAGGTTCTTTAAGTGACTCA 704
|||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||
Sbjct 777 GCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCTCAA-AAGGTTCTTTAAGTGAATCA 835
Query 705 CAA-ACTGTT-AATCAGAAG-----ATTGAA-TAAA-GTGGCGATGACCTCATTGCCCTA 755
|| | | || ||| | ||| || ||| |||| ||||||||||||| ||||||| |
Sbjct 836 GAAGA-T-TTGAATAA-AAGTGGCGAT-GAAATAAAAGTGGCGATGACCTAATTGCCC-A 890
Query 756 ATTCTCATAAAC 767
|||||||| |||
Sbjct 891 ATTCTCATCAAC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5