BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02930.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470264 jgi|Araly1|470264|fgenesh2_kg.1__218__AT1G02930.1 1365 0.0
Ahg470263 jgi|Araly1|470263|fgenesh2_kg.1__217__AT1G02920.1 1033 0.0
> Ahg470264 jgi|Araly1|470264|fgenesh2_kg.1__218__AT1G02930.1
Length=918
Score = 1365 bits (739), Expect = 0.0
Identities = 866/926 (94%), Gaps = 14/926 (2%)
Strand=Plus/Plus
Query 35 TTTTATCCaaaaaa-caaaataaaaaaGAGTATTCAAGCTTGGTGGCGCCGTTTG-TTTT 92
|||||||||||||| ||||| |||||||||||||||| ||||||||||| |||| ||||
Sbjct 1 TTTTATCCAAAAAATAAAAAT-AAAAAGAGTATTCAAGATTGGTGGCGCCTTTTGCTTTT 59
Query 93 TGGTTTATTCACTAAAGTTACTCTGTTTTAGTTGTATAAATACACACT-CCCATTTGTGT 151
| ||||||||||| ||||||||||| ||||||||||||||||||| | |||| ||||||
Sbjct 60 T-GTTTATTCACT-AAGTTACTCTG-TTTAGTTGTATAAATACAC-TTCCCCA-TTGTGT 114
Query 152 ATTTCTTTTCATCAATCACAAAGATCTCTCTACTTCAATAAATCTCCACCTTAC-TTTAA 210
||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 115 ATTTCTTTTCATCAACCACAAAGATCTCTCTACTTCAACAAATCTCCACATTACTTTTAA 174
Query 211 GAACAAGAAAAACACAGTATTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTT 270
|||||| ||||| |||| ||||| ||||||||||||||||||||| || ||||||||||
Sbjct 175 GAACAAAAAAAAAACAGCGTTAACTAATGGCAGGAATCAAAGTTTTTGGCCACCCAGCTT 234
Query 271 CCACAGCCACTAGAAGAGTTCTCATCGCTCTTCACGAGAAGAATGTCGACTTTGAATTCG 330
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 235 CCACAGCCACGAGAAGAGTTCTCATCGCTCTACACGAGAAGAATGTCGACTTTGAATTCG 294
Query 331 TTCATGTCGAGCTCAAAGATGGTGAACACAAGAAAGAGCCTTTCATCCTTCGCAACCCCT 390
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 295 TTCATGTCGAGCTCAAAGATGGTGAACACAAGAAAGAGCCTTACATCCTTCGCAACCCCT 354
Query 391 TTGGTAAAGTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAATCAAGAGCAATTA 450
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 355 TTGGTAAAGTTCCAGCCTTTGAAGATGGAGACTTCAAGATTTTCGAGTCAAGAGCAATCA 414
Query 451 CTCAATACATAGCTCATGAATTCTCAGACAAAGGAAACAACCTTCTCTCAACTGGCAAGG 510
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 415 CTCAATACATAGCTCATGAATTCTCAGACAAAGGAAACAACCTTCTCTCAGCTGGCAAAG 474
Query 511 ACATGGCGATCATAGCCATGGGCATTGAAATTGAGTCGCATGAGTTTGACCCAGTTGGTT 570
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 475 ACATGGCGATCATAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGATCCAGTTGGTT 534
Query 571 CAAAGCTTGTTTGGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCG 630
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 535 CCAAGCTTGTTTGGGAGCAAGTCTTGAAGCCTTTGTATGGTATGACCACAGACAAAACCG 594
Query 631 TTGTTGAAGAAGAAGAGGCTAAGCTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTG 690
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGTTGAAGAAGAAGAGGCTAAGTTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTG 654
Query 691 GTGAGTCCAAGTATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTG 750
||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 655 GTGAGTCTAAGTATTTGGCTGCTGATCACTTCACTTTGGTCGATCTTCACACTATCCCTG 714
Query 751 TGATTCAATACTTACTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTGA 810
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 TGATTCAGTACTTGCTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCA 774
Query 811 GTGCTTGGGTTGCTGACATCACTTCAAGGCCTTCTGCTCAGAAGGTTCTTTAAGTGAATC 870
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 775 GTGCTTGGGTTGCTGACATCACTTCTAGGCCTTCTGCTCAAAAGGTTCTTTAAGTGAATC 834
Query 871 TCAAACTATTT-A-TCGATCAGAAGATGTAATAAAAGTGGCGATGACCTAATTGCCCAAT 928
|| |||| | | | | |||| |||||||||||||||||||||||||||||||
Sbjct 835 AGAAG--ATTTGAATAAAAGTGGCGATGAAATAAAAGTGGCGATGACCTAATTGCCCAAT 892
Query 929 TCTCATAAACTCtgtttttctttttg 954
|||||| |||||||||||||||||||
Sbjct 893 TCTCATCAACTCTGTTTTTCTTTTTG 918
> Ahg470263 jgi|Araly1|470263|fgenesh2_kg.1__217__AT1G02920.1
Length=831
Score = 1033 bits (559), Expect = 0.0
Identities = 668/718 (93%), Gaps = 17/718 (2%)
Strand=Plus/Plus
Query 229 ATTAACAAATGGCAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAG 288
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ATTAACAAATGGGAGGAATCAAAGTTTTCGGTCACCCAGCTTCCACAGCCACTAGAAGAG 62
Query 289 TTCTCATCGCTCTTCACGAGAAGAATGTCGACTTTGAATTCGTTCATGTCGAGCTCAAAG 348
||||||||||||| |||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 63 TTCTCATCGCTCTACACGAGAAGAATCTCGACTTCGAATTCGTTCATATCGAGCTCAAAG 122
Query 349 ATGGTGAACACAAGAAAGAGCCTTTCATCCTTCGCAACCCCTTTGGTAAAGTTCCAGCCT 408
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 123 ATGGTGAACACAAGAAAGAGCCTTTCATCTTTCGCAACCCTTTTGGTAAAGTTCCAGCCT 182
Query 409 TTGAAGATGGAGACTTCAAGATTTTCGAATCAAGAGCAATTACTCAATACATAGCTCATG 468
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 183 TTGAAGATGGAGACTTGAAGCTTTTCGAATCAAGAGCAATTACTCAATACATAGCTCAT- 241
Query 469 AATT-CTCAGACAAAGGAAA-CAACCTTCTCTCAAC-TGG---CAAGGACATGGCGATCA 522
|| ||||||||||||||| ||| ||| |||| | ||| ||||| ||| ||| |||
Sbjct 242 TTTTACTCAGACAAAGGAAACCAA-CTTGTCTC-CCTTGGCTCCAAGGCCATTGCGGTCA 299
Query 523 TAGCCATGGGCATTGAAATTGAGTCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTT 582
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TAGCCATGGGCATTGAAATTGAATCGCATGAGTTTGACCCAGTTGGTTCAAAGCTTGTTT 359
Query 583 GGGAGCAAGTCTTAAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAAG 642
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GGGAGCAAGTCTTTAAGCCTTTGTATGGTATGACCACAGACAAAACCGTTGTTGAAGAGG 419
Query 643 AAGAGGCTAAGCTAGCCAAAGTCCTCGATGTTTACGAACACAGGCTTGGTGAGTCCAAGT 702
|||||| |||| |||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 420 AAGAGGTTAAGTTAGCCAAAGTTCTCGATGTTTACGAACACAGGCTTGGTGAGTCTAAGT 479
Query 703 ATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTTGGCTTCTGACCACTTCACTTTGGTCGATCTTCACACTATCCCTGTGATTCAATACT 539
Query 763 TACTTGGAACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTGAGTGCTTGGGTTG 822
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TGCTTGGTACTCCAACTAAGAAACTCTTCGACGAGCGTCCACATGTCAGTGCTTGGGTTG 599
Query 823 CTGACATCACTTCAAGGCCTTCTGCTCAGAAGGTTCTTTAAGTGAATCTCAAACTATTTA 882
|||| |||||||| |||||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 600 CTGATATCACTTCTAGGCCTTCTGCTCAGAAGGTTCTTTAAGCGAATCAAAAACTGTT-A 658
Query 883 TCGATCAGAAGAT-GTAATAAAAGTGGCGATGACCTAATTGCCC-AATTCTCATAAAC 938
|||||||||| | |||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 659 ---ATCAGAAGATTG-AATAAA-GTGGCGATGACCTCATTGCCCCAATTCTCATAAAC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5