BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02940.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333621 jgi|Araly1|333621|fgenesh1_pg.C_scaffold_1000186 1074 0.0
> Ahg333621 jgi|Araly1|333621|fgenesh1_pg.C_scaffold_1000186
Length=747
Score = 1074 bits (581), Expect = 0.0
Identities = 651/685 (95%), Gaps = 4/685 (1%)
Strand=Plus/Plus
Query 89 GTCAAGAATTAGCTCGTAAAGATGAGTACAAGATTTATGGGTACCCTTACTCAACCAACA 148
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 65 GTCAAGAATTAGCTCACAAAGATGAGTACAAGATTTATGGGTACCCTTACTCCACCAACA 124
Query 149 CAAGGCGTGTCCTCGCCGTTCTTCATGAGAAAGGTCTCTCTTACGATCCCATCACCGTCA 208
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 125 CAAGGCGTGTCCTCGCCGTTCTCCATGAGAAAGGTCTCTCTTACGATCCCATCACCGTCG 184
Query 209 ACTTGATAGCCGGTGACCAGAAGAAGCCGA-GTTTTCTCGCTATCAATCCATTTGGTCAA 267
|||||| ||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 185 ACTTGAAAGCCGGTGACCAGAAGAAGCC-ACGTTTTCTCTCTATCAATCCATTTGGTCAA 243
Query 268 GTCCCAGTTTTCCTAGACGGGGGTCTTAAGTTGACTGAATCTCGAGCTATATCTGAATAC 327
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 244 GTCCCAGTGTTCCTAGATGGGGATCTTAAGTTGACTGAATCTCGAGCTATATCTGAATAC 303
Query 328 ATAGCGACTGTCCATAAATCAAGAGGCACACAACTTCTGAATTACAAAAGCTACAAAACA 387
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 304 ATTGTGACTGTCCATAAATCAAGAGGCACACAACTTCTGAATTACGAAAGCTACAAAAAA 363
Query 388 ATGGGAACACAAAGAATGTGGATGGCTATCGAATCTTTTGAGTTTGATCCACTCACATCA 447
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 364 ATGGGAACACAAAGAATGTGGATGGCTATTGAATCTTTTGAGTTTGATCCACTCACATCA 423
Query 448 ACACTGACC-TGGGAACAATCCATCAAGCCTATGTACGGTCTAAAGACGGACTATAAGGT 506
| | ||||| ||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 424 ATATTGACCCTGG-AGCAATCCATCAAGCCTATGTACGGTCTAAAGACGGACTACAAGGT 482
Query 507 TGTGAATGAAACCGAGGCGAAGCTAGAGAAGGTTCTAGATATATACGAAGAACGACTCAA 566
|||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 483 TGTGAATGAAACAGAGGCAAAGTTAGAGAAGGTTCTAGATATATACGAAGAACGACTCAA 542
Query 567 AAATTCTAGCTTCTTGGCTAGTAACAGCTTCACAATGGCTGATCTTTATCACCTTCCTAA 626
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 543 AAAGTCTAGCTTCTTGGCTAGTAACAGTTTCACAATGGCTGATCTTTATCACCTTCCGAA 602
Query 627 TATACAATACCTTATGGACACACATACAAAGAGAATGTTTGTAAACCGGCCAAGCGTGCG 686
||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 603 TATTCAATACCTTATGGACACACATACAAAGAGATTGTTTGAAAACCGGCCAAGCGTGCG 662
Query 687 CCGGTGGGTGGCTGAGATCACAGCTAGACCGGCTTGGAAGAGGGCATGTGATGTGAAGGC 746
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 663 CCGGTGGGTGGCTGAGATCATAGCTAGACCGGCTTGGAAGAGGGCATGTGATGTTAAGGC 722
Query 747 TTGGTACCATAAGAAGAAGAATTAA 771
|||||||||||||||||||||||||
Sbjct 723 TTGGTACCATAAGAAGAAGAATTAA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5