BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02950.2
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470268 jgi|Araly1|470268|fgenesh2_kg.1__222__AT1G02950.2 1382 0.0
> Ahg470268 jgi|Araly1|470268|fgenesh2_kg.1__222__AT1G02950.2
Length=903
Score = 1382 bits (748), Expect = 0.0
Identities = 857/908 (94%), Gaps = 13/908 (1%)
Strand=Plus/Plus
Query 3 AAATTAAACAAGTGTATCTATATCGTATATATGGACTGCTTACAGATGGTGTTCAAGTTA 62
||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACTAAACAATTCTATCTATATAGTATATATGGACTGCTTACAGATGGTGTTCAAGTTA 60
Query 63 TTTCCAAACTGGAAACGTGAGGCAGAAGTTAAAAAGCTCGTTGCAGGTTACAAGGTTCAT 122
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGCCAAACTGGAAACGTGAGGCAGAAGTTAAAAAGCTCGTTGCAGGTTACAAGGTTCAT 120
Query 123 GGCGATCCTTTCTCCACCAACACAAGGCGTGTCCTCGCTGTTCTCCATGAGAAAAGACTC 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GGCGATCCTTTCTCCACCAACACAAGGCGTGTCCTCGCTGTTCTCCATGAGAAAGGACTC 180
Query 183 TCTTACGAGCCTATTACCGTCAAATTGCAAACCGGTGAACACAAAACCGAACCTTTCCTC 242
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 TCTTACGAGCCCATTACCGTCAAATTGCAAACCGGTGAACACAAAAGGGAACCTTTCCTC 240
Query 243 TCTCTCAACCCATTTGGTCAAGTCCCTGTTTTTGAGGATGGAAGTGTTAAGCTGTATGAA 302
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 241 TCTCTCAACCCATTTGGTCAAGTCCCTGTTTTTGAAGATGGAAATGTTAAGCTGTATGAA 300
Query 303 TCCCGAGCCATCACACAATACATCGCATATGTTCATAGCTCAAGAGGCACACAGCTTCTG 362
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TCCCGAGCCATCACGCAATACATTGCATATGTTCATAGCTCAAGAGGCACACAGCTTCTG 360
Query 363 AATCTTAGAAGTCACGAGACAATGGCAACTCTAACAATGTGGATGGAAATCGAAGCTCAT 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATCTTAGAAGTCACGAGACAATGGCAACTCTAACAATGTGGATGGAAATCGAAGCTCAT 420
Query 423 CAGTTTGATCCACCCGCATCGAAACTCACTTGGGAACAAGTCATTAAGCCTATCTACGGT 482
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGTTTGATCCACCCGCATCAAAACTCACTTGGGAACAAGTCATTAAGCCTATCTACGGT 480
Query 483 CTAGAGACTGACCAAACAATCGTCAAAGAGAACGAGGCTATTCTAGAGAAAGTTCTAAAT 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTAGAGACTGACCAAACAATCGTCAAAGAGAACGAGGCTATTCTAGAGAAAGTTCTAAAC 540
Query 543 ATCTACGAGAAACGACTCGAAGAATCTAGATTCTTGGCTTGTAATAGCTTTACTTTGGTT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATCTACGAGAAACGACTCGAAGAATCTAGATTCTTGGCTTGTAATAGCTTTACTTTGGTT 600
Query 603 GATCTTCATCACCTACCAAACATACAATACCTTTTGGGAACTCCAACGAAGAAATTGTTC 662
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct 601 GATCTTCATCACCTACCAAACATACAATACCTTTTGGGAACTCCAACAAAGATACTGTTC 660
Query 663 GAAAAAAGATCTAAAGTGCGTAAGTGGGTGGATGAGATTACGAGTAGAGAGGCTTGGAAA 722
|||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 GAAAAACGAACCAAAGTGCGTAAGTGGGTGGAGGAGATTACGAGTAGAGAGGCTTGGAAG 720
Query 723 ATGGCATGTGATCAAGAGAAATCTTGGTTTAATAAGCCAAGGAACTAACTGAAAGCAGAA 782
||||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 721 ATGGCCTGTGATCAAGAGAAATCTTGGTCTAATAAGCAAAGGAACTAAATGAAAGCAGAA 780
Query 783 GTAATCTTTACgtgtgaatgtgtgtgtatgtgtatgttgagtttgggtctttgtttgtaa 842
|||| |||| ||||||||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 781 GTAAAGTTTATGTGTGAATGAAAGTGTTTGTGT--GTTGAGTTTGGGTCTTTGTTCGTAA 838
Query 843 gcttgtgcgtgttgtttgttgccttgC-GAATCTTAT----T---TTATGTTTGGTTAAT 894
||||||| ||||||||||||| ||| ||||||||| | || |||||| |||||
Sbjct 839 GCTTGTG--TGTTGTTTGTTGC-TTGGTGAATCTTATAAGATGCGTTGTGTTTGATTAAT 895
Query 895 ATATGTTT 902
||||||||
Sbjct 896 ATATGTTT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5