BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02960.2
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470271 jgi|Araly1|470271|fgenesh2_kg.1__225__AT1G02960.2 2237 0.0
> Ahg470271 jgi|Araly1|470271|fgenesh2_kg.1__225__AT1G02960.2
Length=1548
Score = 2237 bits (1211), Expect = 0.0
Identities = 1461/1576 (93%), Gaps = 39/1576 (2%)
Strand=Plus/Plus
Query 12 AACGACGGTACAAAGGCGAACACCGGCAAGATCGATTTGAACGGTGACGGCGAATGTGGC 71
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1 AACGACGGTACAAAGGCGAACACCGGCGAGATCGATTTGAACGGTGACGGCTAATGTGGC 60
Query 72 GGCGAAGTAACTTACCGGGGAATCCAGATTCCGATCAGAGCATATCTGAGGAAGA--A-G 128
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 61 GGCGAAGTAACTTACCGGTGAATCCAGATTCCGATCAGAGCATATCTGAGGAAGAGGAGG 120
Query 129 A--AG-AAAATGATATTTCGCCGAAG-GAGAATGCGAAGGAACAAGAGAGAGGATTACTA 184
| || |||||||| | | ||| ||| |||||||| |||||| ||||| |||||||||||
Sbjct 121 AGGAGCAAAATGATCTGTGGCC-AAGCGAGAATGCAAAGGAAGAAGAGGGAGGATTACTA 179
Query 185 CTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGAGCTAAATTATGCTAGGGAAACC 244
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 180 CTTCAAACAAAGCTCGAAAAACTCATAGGTTGTGGTGAACTAAATTATGCTAGGGATCCC 239
Query 245 GGTGATGTAACTCTGGAAGCAACTCTACGGAAGATATCATCCTCTCTTGAAGATGTGGTC 304
||||||||||||||||||||||||||||||||||||||| || | ||||| |||
Sbjct 240 GGTGATGTAACTCTGGAAGCAACTCTACGGAAGATATCA-----TC--G--GATGTCGTC 290
Query 305 GAAGTTCCTGACTCCCCCGAGGAGAGTTA-TATTT-CTTCTTCCAGAAGAACTGGATTAG 362
|||||||||| ||||| |||||||| || | ||| ||||||| |||||||| ||||| |
Sbjct 291 CAAGTTCCTGATTCCCCTGAGGAGAG-TAGT-TTTACTTCTTCAAGAAGAACAGGATTTG 348
Query 363 CATGCATATCTGCTCAGGAAAATGGGTCAGATGATGAGATTACACATGATGAACAAGTGG 422
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 349 CATGCATATCTGCTCAGGAAAGCGGGTCAGATGATGAGATTCCACATGATGAACAAGTGG 408
Query 423 CAACTTGGTCTGCTATAAGTAAAGAAACCAAGTCACTAATCCATTTGAATGGTGTTGCTT 482
|||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 409 CAACTTGGTCTGCTATTAGTAAAGAAACCAAGTCACTAACCCATTTGAATGGTATTGCTT 468
Query 483 CAGTCGCATCATCCCATCTATCTGGCTTCAGAGCCAAGAAAAGTAGTAATGGTCTCAAAG 542
||||||||||||||||||||||||||||||||||||||| ||||||||| | | ||||||
Sbjct 469 CAGTCGCATCATCCCATCTATCTGGCTTCAGAGCCAAGAGAAGTAGTAAAGTTGTCAAAG 528
Query 543 ATCATGGGAGGCCAAAATTTTCATTTAACTCACATACTCATGGAGAAACGTCATCCAAGA 602
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 529 ATCATGTGAGGCCAAAATTTTCATTTAACTCACATACTCATGGAGAAGCGTCATCCAAGA 588
Query 603 TAAGTGACATGGCTGAAATCTTTGAGCCTGATGTGGAGGATCAGGCTATAGAAGAGGATC 662
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 589 TAAGTGACATGGCTGAAATCTTTGAGCCTGATGCGGAGGATCAGGCCATAGAAGAGGATC 648
Query 663 CAATTATTGAATGCCCCAACAGTTTTGATGAAAGATCAGAAAACAGGCAGGGTGTTTCTG 722
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CGATTGTTGAATGCCCCAACAGTTTTGATGAAAGATCAGAAAACAGGCAGGGTGTTTCTG 708
Query 723 TTGCTGAGTCGAGAGAAGTTTTGCACGAGTGCACTAAAGATGCGGTACCCAAGCTTCAAG 782
|||||||||||||||| ||| |||||| ||||||| |||||||| |||||||||||| ||
Sbjct 709 TTGCTGAGTCGAGAGAGGTTCTGCACGGGTGCACTGAAGATGCGATACCCAAGCTTCTAG 768
Query 783 AAATTCCTCTAGATAAAATTAGACTGATAAAAAGAAGCTCTGAACTGGACAGCAGACATG 842
||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 769 AAATTCCTCCAGATAAGATTAGACTGATAAAAAGAAGCTCTAAACTGTACAGCAGACATG 828
Query 843 AAGCAAAAAGTCGGAAATTTACTCATAAGGGAAATTCATCTAACTTCCAAGATAGTGATA 902
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 829 AAGCAAAAAGTCGAAAATTTGCTCATAAGGGAAATTCATCTAACTTCCAAGATAGTGATA 888
Query 903 CTGATGATGAACTTCCTGGACCTATGGATAGTGGATCATCAAGCGATGATGAGCCTAGTT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGATGATGAACTTCCTGGACCTATGGATAGTGGATCATCAAGCGATGATGAGCCTAGTT 948
Query 963 ATCAAAGCTCAGTGCCAAACATTTCCAACCAGAAGAAACAATTTGTTGGGGACCGGTTTG 1022
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 949 ATCGAAGCTCAGTGCCAAACATTTCTAACCAGAAGAAACAATTTGTTGGAGACCGGTTTG 1008
Query 1023 ATGAAGCAATAAAAGCTTCCTCTTTGAGCAAAGAAGGTCTCTTGTTCGGTTCACCTAAAT 1082
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 ATGAAGCGATAAAAGCTTCCTCTTTGAGCAAGGAAGGTCTCTTGTTCGGTTCACCTAAAT 1068
Query 1083 TATCTGGTGGCTCTAGCCTGTATGGCAAGCTGCAACAGATCATGAAACAAGAAAAAGAGA 1142
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1069 TATCTGGTGGCTCTAGCCTGTATGGCAAGCTACAACAGATCATGAAACAAGAAAAAGAGA 1128
Query 1143 CGGAAATGGAAATCATGAGGAAATTGCAAAGCGGAATCGGAGAAGCAGATTCATCGGGCT 1202
| ||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||| |||
Sbjct 1129 CAGAAATGGAAATCACGAGGAAATTGCAAGGCGGAATCGAACAAGCAGATACATCGAGCT 1188
Query 1203 ATGTTGATGTT-AAAGTCATGTCAAGACACTTGGAGGGAAAGCTTGTCGTCTGCAAATGC 1261
||||||| || ||| |||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1189 ATGTTGACGTAGAAA-TCATATCAAGACACTTGGAGGGAAAGCTGGTTGTCTGCAAATGC 1247
Query 1262 TCTGTCATTGACCTCTCTGGGGACTCCCTATTACTCAAGAACACACAAGCTCTTGCGGCA 1321
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 TCCATCATTGACCTTTCTGGGGACTCCCTATTACTCAAGAACACACAAGCTCTTGCGGCC 1307
Query 1322 AAAGAAACAGAAACAACAATTATTTTTAGTCCGAAAGTTTGTGCGGATGTTGATATCGAA 1381
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1308 AAAGAAACAGAAACAACAATTATTTTTAGTCCTAAAGTTTGTGCGGATGTTGATATCGAA 1367
Query 1382 ATAGGGAACTTTATCCGAGTATATGCGCCATGGAAGGAGTTGGAAGTGCAGAAAACCAAT 1441
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1368 ATAGGGAACTTTATCCGAGTATATGCACCATGGAAGGAGTTGGAAGTGAAGAAAACCAAT 1427
Query 1442 GATGTGATTATTTTGTCTTCATATTTCTCAAGTTTGTAATATAACTCACACAAATGTCAA 1501
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1428 GATGTGATTATTTTGTCTTCATATTTCTCAAGTTTGTAATGTAACTCACACAAA----AA 1483
Query 1502 GATGTGGAAAAAACTTGCAAATGATTTTATCAGTG-TGTATAAAAACGATAATTAAAGCT 1560
| || ||||||| |||||||||| || | ||||||||||||||||||||||
Sbjct 1484 -A-----AA----CTTGCAACTGATTTTATCTCTGCT-TATAAAAACGATAATTAAAGCT 1532
Query 1561 CTCTGATTGATAACAA 1576
||||||||||||||||
Sbjct 1533 CTCTGATTGATAACAA 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5