BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02970.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918959 jgi|Araly1|918959|scaffold_100240.1 2471 0.0
> Ahg918959 jgi|Araly1|918959|scaffold_100240.1
Length=1544
Score = 2471 bits (1338), Expect = 0.0
Identities = 1480/1549 (96%), Gaps = 7/1549 (0%)
Strand=Plus/Plus
Query 82 AAAGTAATAATATTCATCGTCATGTTCGAGAAGAACGGAAGAACACTGTTGGCGAAGAGG 141
||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAA-TACTAATATTCATCGTCATGTTCGAGAAGAAAGGAAGAACACTGTTGGCGAAGAGG 59
Query 142 AAAACCCAAGGGACAATCAAAACCAG-GGCATCGAAGAAGATTCGGAAGATGGAAGGGAC 200
||||||| ||| || ||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 60 AAAACCCTAGGAACGATCAAAACCAGAAG-AACGAAGAAGATTCGCAAGATGGAAGGGAC 118
Query 201 ATTGGAGCGTCACTCTCTGCTTCAATTCGGTCAATTGTCGAAGATTTCTTTCGAAAATCG 260
||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||
Sbjct 119 ATTGGAGCGACACTCTCTGCTTCAATTCGGTCAATTGTCGAAGCTTTCTTTTGATAATCG 178
Query 261 TCCGTCGTCGAATGTTGCTTCATCGGCGTTTCAGGGTCTCCTGGATTCGGATTCTTCGGA 320
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 179 TCCGTCGTCGAATGTTGCTTCATCGGCGTTTCAGGGTCTTCTGGATTCGGACTCGTCGGA 238
Query 321 ACTCCGAAATCAGTTGGGTTCCGCTGATTCAGATGCCAATTGCGGAGAGAAGGACTTTAT 380
||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 239 GCTCCGGAATCAGTTGGGTTCCGTTGATTCAGATACCAATTGCGGAGAGAAGGACTTTAT 298
Query 381 TCTTAGCCAAGACTTCTTCTGCACACCTGACTATATAACCCCGGACAATCAGAACTTGAT 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTTAGCCAAGACTTCTTCTGCACACCTGACTATATAACCCCGGACAATCAGAACTTGAT 358
Query 441 GAGCGGCTTAGATATCAGCAAGGATCATTCTCCATGTCCTAGGTCTCCTGTTAAACTAAA 500
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 359 GAGCGGCTTAGATATCAGCAAGGATCATTCTCCTTGTCCTAGGTCTCCTGTCAAATTAAA 418
Query 501 TACAGTTAAAAGCAAAAGATGTCGCCAGGAGAGTTTCACAGGAAATCATTCAAATTCTAC 560
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 TACAGTTAAAAGCAAAAGATGTCGCCAGGAGAGTTTCACATCAAATCATTCAAATTCTAC 478
Query 561 CTGGTCTTCAAAACATAGAGTAGATGAACAAGAGAATGATGATATTGACACAGATGAGGT 620
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 CTGGTCTTCAAAACATAGAGTAGATGAACAAGAGAATGATGATATTGACACTGATGAGGT 538
Query 621 GATGGGGGATAAACTCCAAGCTAATCAAACAGAGAGGACTGGATACGTTTCACAGGCTGC 680
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 CATGTGGGATAAACTCCAAGCTAATCAAACAGAGAGGACTGGATATGTTTCACAGGCTGC 598
Query 681 AGTTGCTCTGCGGTGTCGGGCTATGCCACCCCCTTGCCTCAAGAATCCGTATGTGT-TGA 739
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 599 AGTTGCTCTGCGGTGTCGGGCTATGCCACCCCCTTGCCTCAAGAATCCGTATGT-TATGA 657
Query 740 ATCAGTCTGAGACTGCTACTGACCCTTTTGGACATCAGAGATCAAAATGTGCAAGTTTTC 799
|||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 658 ATCAGTCTGAGACTGCTACTGACCCTTTCGGATATCAGAGATCAAAATGCGCAAGTTTTC 717
Query 800 TCCCTGTAAGTACAAGTGGGGATGGCTTGTCAAGATATCTCACGGACTTTCATGAAATCC 859
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 TCCCTGCAAGTACAAGTGGGGATGGCTTGTCAAGATATCTCACGGACTTTCATGAAATTC 777
Query 860 GGCAAATTGGTGCTGGACATTTCAGTCGGGTATTTAAGGTGTTGAAGAGAATGGACGGTT 919
||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 778 AGCAAATTGGTGCTGGACATTTCAGTCGTGTATTTAAGGTGTTGAAGAGAATTGATGGTT 837
Query 920 GCCTATATGCTGTGAAACACAGCACAAGAAAGTTGTATCTAGATTCAGAGAGACGTAAAG 979
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 838 GCCTATATGCTGTGAAACACAGCACAAGGAAGTTGTATCTAGATTCAGAGAGACGTAAAG 897
Query 980 CTATGATGGAAGTGCAAGCTCTTGCTGCTCTTGGGTTTCATGAAAATATAGTAGGATATT 1039
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 898 CTATGATGGAAGTGCAAGCTCTTGCTGCTCTTGGGTTTCATGAAAATGTAGTAGGATACT 957
Query 1040 ACTCCTCGTGGTTTGAAAATGAGCAATTATACATTCAACTGGAACTCTGCGATCACAGCT 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACTCCTCGTGGTTTGAAAATGAGCAATTATACATTCAACTGGAACTCTGCGATCACAGCT 1017
Query 1100 TGTCAGCTTTGCCTAAGAAATCTTCTCTTAAAGTCTCAGAAAGAGAGATCTTGGTGATTA 1159
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TGTCAGCTTTGCCCAAGAAATCTTCTCTTAAGGTCTCAGAAAGAGAGATCTTGGTGATTA 1077
Query 1160 TGCATCAGATAGCAAAGGCATTACATTTTGTGCATGAGAAAGGAATAGCTCATTTAGATG 1219
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1078 TGCATCAGATAGCTAAGGCATTGCAGTTTGTGCATGAGAAAGGAATAGCTCATTTAGATG 1137
Query 1220 TAAAACCTGACAATATTTACATTAAGAACGGTGTTTGCAAGCTTGGTGACTTTGGTTGTG 1279
||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1138 TAAAACCCGACAATATTTACATCAAGAACGGTGTTTGCAAGCTCGGTGACTTTGGTTGTG 1197
Query 1280 CCACACGATTGGACAAAAGCTTACCAGTAGAAGAAGGAGATGCACGTTACATGCCTCAAG 1339
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCACACGATTGGACAGAAGTTTACCAGTAGAAGAAGGAGATGCACGTTACATGCCTCAAG 1257
Query 1340 AAATTCTAAATGAAGACTACGAACACCTTGATAAAGTCGATATCTTCTCTTTAGGTGTGA 1399
|||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 1258 AAATCCTCAATGAAGACTACGACCACCTTGATAAAGTCGATATCTTTTCTTTAGGTGTAA 1317
Query 1400 CGGTTTATGAGCTGATTAAGGGATCTCCTCTTACAGAATCAAGAAACCAGTCGCTCAATA 1459
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 CGGTTTACGAGCTGATTAAGGGATCTCCTCTTACAGAATCAAGAAACCAGTCCCTCAATA 1377
Query 1460 TCAAAGAAGGAAAACTTCCTCTCCTTCCTGGCCATTCGTTGCAGTTACAACAACTTCTTA 1519
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1378 TCAAAGAAGGCAAACTTCCTCTCCTTCCTGGCCATTCGTTGCAGTTACAACAACTGCTTA 1437
Query 1520 AGACAATGATGGATCGTGATCCGAAGCGTCGGCCTTCTGCTAGAGAATTACTGGACCATC 1579
|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 1438 AGACAATGATGGATCGTGATCCTATGCGTCGGCCTTCTGCTAGAGAAGTACTGGACCATC 1497
Query 1580 CCATGTTTGATAGGATTCGAGGTTGATTCATAGAGTCTCTCAGATGTCG 1628
||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1498 CCATGTTTGATAGGATTCGAGGTTGATTCATAG--TCTCTCAGATGTCG 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5