BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G02980.1
Length=2327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311398 jgi|Araly1|311398|fgenesh1_pm.C_scaffold_1000178 2852 0.0
Ahg925091 jgi|Araly1|925091|scaffold_200652.1 320 3e-86
> Ahg311398 jgi|Araly1|311398|fgenesh1_pm.C_scaffold_1000178
Length=2220
Score = 2852 bits (1544), Expect = 0.0
Identities = 2006/2227 (90%), Gaps = 39/2227 (2%)
Strand=Plus/Plus
Query 18 TGTGTTGGAGGCAGGATGG-TCTGTCATGGAGGCTGGTGTTGCAAAGCTACAAAAGATTC 76
||||||||||| ||||||| || ||||||||||||||||| |||||||||| | |||||
Sbjct 18 TGTGTTGGAGGAAGGATGGCCCT-TCATGGAGGCTGGTGTTACAAAGCTACATAGGATTC 76
Query 77 TGGAAGAAGTGCCTGATGAGCCACCATTTGACCCGGTTCAACGTATGCAGCTGTACACGA 136
|||||||| |||| ||||||| ||||||| |||||||| |||| | ||||||||||
Sbjct 77 TGGAAGAATTGCC---TGAGCCAGCATTTGAGTCGGTTCAATATATGAATCTGTACACGA 133
Query 137 CTGTCCACAATCTGTGTACCCAGAAACCTCCTAATGATTACTCACAGCAGATCTATGATC 196
|| || ||||| ||||| ||||||||||||| |||||| |||||||||| | ||||||
Sbjct 134 CTATCTACAATATGTGTGTCCAGAAACCTCCTCATGATTTCTCACAGCAGCTTTATGATA 193
Query 197 GGTATGGTGGAGT-ATATGTTGATTACAATAAACAAACTGTGTTGCCGGCTATACGTG-A 254
|||| ||||||| || || |||||||||||||||||| ||||||||||||||| | | |
Sbjct 194 AGTATCGTGGAGTAAT-TGATGATTACAATAAACAAACAGTGTTGCCGGCTATAAG-GAA 251
Query 255 GAAGCATGGTGAATATATGTTGAGAGAGCTTGTTAAGAGATGGGCCAACCAGAAAATTCT 314
||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 252 GAAGCATGGTGAATATATGCTGAGAGAGCTTGTTAAGAGATGGGCTAACCATAAAGTTCT 311
Query 315 TGTTAGATGGTTATCCCACTTCTTCGAATATCTTGACCGTT--TTTATACTCGTCGGGGG 372
|||||||||||||||| ||||||||| ||||||||||||| ||| | || |||| |
Sbjct 312 GGTTAGATGGTTATCCCGCTTCTTCGACTATCTTGACCGTTACTTTGT--TCCTCGGAGA 369
Query 373 TCTCATCCAACACTGAGT-GCTGTTGGCTTCATATCCTTCCGCGACCTGGTTTATCAAGA 431
|| || |||||||| | | ||||||||| | |||||| ||||||||||||||||||||
Sbjct 370 AATCTTCTAACACTGAATAG-TGTTGGCTTGACATCCTTTCGCGACCTGGTTTATCAAGA 428
Query 432 GTTACAGTCCAAGGCCAAAGACGCTGTACTAGCACTTATTCATAAAGAACGCGAGGGCGA 491
| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct 429 GATACAGTCCAATGCCAAAGACGCTGTACTAGAACTTATTCATAAAGAACGTGAGGGTGA 488
Query 492 ACAGATTGATAGAGCACTATTGAAAAACGTAATAGATGTCTATTGTGGGAATGGGATGGG 551
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 489 ACAGATTGATAGATCACTATTGAAAAACGTAATAGATGTCTATTGTGGGAATGGAATGGG 548
Query 552 AGAGCTGGTTAAATACGAAGAGGATTTTGAAAGCTTCTTGCTTGAAGATTCTGCATCTTA 611
|||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 549 AGAGATGGTAAAATACGAAGAGGATTTTGAAAGCTTCTTGCTTCAAGATTCTGCATCTTA 608
Query 612 CTACTCTCGCAACGCCTCAAGGTGGAACCAGGAGAATTCTTGTCCTGATTACATGATAAA 671
||| |||||||| ||||||| ||||| ||||||| |||||||||||||||||||| |||
Sbjct 609 CTATTCTCGCAAGGCCTCAAAGTGGAGCCAGGAGGATTCTTGTCCTGATTACATGCGAAA 668
Query 672 GGCTGAGGAGTCTCTAAGACTGGAGAAGGAGAGAGTCACCAACTACCTTCATTCAACCAC 731
||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 669 GGCTGAGGAGTGTCTAAAACTGGAGAAGGAGAGAGTCACTAACTACCTTCATTCAACCAC 728
Query 732 TGAGCCGAAACTAGTTGCGAAAGTACAAAATGAATTGTTGGTAGTGGTTGCAAAACAACT 791
|||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 729 TGAGCCGAAATTACTTGGGAAAGTACAAAATGAGTTGTTGGTAGTGGTTGCAAAACAGCT 788
Query 792 TATAGAAAATGAGCACTCAGGATGCCGTGCATTGTTAAGAGACGACAAGATGGATGATCT 851
||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 789 TATAGAAAATGAGCAGTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGATGGATGATCT 848
Query 852 CGCCAGGATGTACAGGCTTTATCATCCAATACC-GCAAGGGCTGGATCCTGTTGCAGACT 910
| |||||||||||| ||||||||| ||||| || |||||| ||||||||||||||||||
Sbjct 849 CTCCAGGATGTACAAGCTTTATCAACCAAT-CCTTCAAGGGTTGGATCCTGTTGCAGACT 907
Query 911 TATTCAAGCAACATATTACTGTAGAGGGAAGTGCCCTTATCAAACAAGCTACCGAGGCAG 970
|||||||||| ||| |||||| |||||||| |||||||||||||||||| |||| ||||
Sbjct 908 TATTCAAGCAGCATGTTACTGCAGAGGGAAATGCCCTTATCAAACAAGCCGCCGACGCAG 967
Query 971 CTACTGATAAGGCTGCAAGTACTAGTGGACTGAAGGTGCAGGACCAGGTGCTTATCAGAC 1030
||||| || ||| ||||||| || |||| | |||||||||||||||||| |||||
Sbjct 968 CTACTAATCAGGATGCAAGTGCTGGTGG-C-----GTGCAGGACCAGGTGCTTGTCAGA- 1020
Query 1031 AATTA-ATTGACCTACACGATAAATTCATGGTCTACGTCGATGAGTGTTTTCAGAAACAC 1089
|| | ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1021 AAAGAGATTGAGCTACACGATAAATACATGGTCTATGTCGATGAGTGTTTTCAGAAACAC 1080
Query 1090 AGCCTCTTCCATAAGGCATTGAAGGAGGCATTTGAAGTCTTCTGTAACAAGACAGTGGCT 1149
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1081 AGCCTCTTCCATAAGGCATTAAAAGAGGCATTTGAAGTCTTCTGTAACAAAACAGTGGCT 1140
Query 1150 GGAGTGTCCAGTGCAGAAATTCTTGCAACGTATTGCGATAATATCCTCAAGACGGGAGGG 1209
|||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 1141 GGAGTGTCTAGTGCAGAAATACTTGCAACCTATTGTGATAATATCCTCAAGACAAAAGGT 1200
Query 1210 GGAATTGAGAAGCTT-GAAAATGAAGAT-CTTGAACTTACGCTTGAGAAAGTGGTTAAGT 1267
|||| |||||||||| | || |||| | | |||| ||||||||||||||||||||||||
Sbjct 1201 GGAAGTGAGAAGCTTAGTGAA-GAAGTTAC-TGAAATTACGCTTGAGAAAGTGGTTAAGT 1258
Query 1268 TGCTTGTTTATATAAGTGACAAGGATCTTTTCGCCGAGTTTTTCAGGAAGAAACAAGCCC 1327
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1259 TGCTTGTTTATATAAGCGACAAGGATCTTTTCGCCGAGTTTTACAGGAAGAAACAAGCCC 1318
Query 1328 GTCGGCTCTTGTTTGATCGCAACGGTAATGACTACCACGAAAGAAGTTTACTTACAAAGT 1387
|||||||||| |||||||||| |||||||||| | |||||||||||| ||||||||||||
Sbjct 1319 GTCGGCTCTTATTTGATCGCAGCGGTAATGACGAGCACGAAAGAAGTATACTTACAAAGT 1378
Query 1388 TTAAAGAACTACTCGGTGCGCAGTTTACTTCTAAGATGGAGGGCATGCTGACGGATATGA 1447
| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
Sbjct 1379 TAAAAGAACTACTCGGGGGGCAGTTTACTTCTAAGATGGAGGGCATGGTGACGGATATAA 1438
Query 1448 CATTGGCAAAAGAACACCAAACCAACTTCG-TGGAATT-TTTATCAGTTAACAAGACCAA 1505
||||||||||||| || ||||||||||||| | | ||| | |||||| || | |||||
Sbjct 1439 CATTGGCAAAAGAGCAGCAAACCAACTTCGCT-G-ATTATCTATCAGCTAGCCTGACCAC 1496
Query 1506 AAAGCTGGGGATGGATTTCACTGTCACTGTACTTACTACTGGTTTTTGGCCAAGTTACAA 1565
|||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1497 AAAGCTGGGGATTGATTTGACTGTCACTGTTCTTACTACTGGTTTCTGGCCAAGTTACAA 1556
Query 1566 AACAACCGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGCTTTTAAGGCCTA 1625
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1557 AACATCTGACCTCAATCTACCCATTGAAATGGTCAACTGTGTTGAAGCTTTTAAAACCTT 1616
Query 1626 TTATGGAACAAAAACCAATTC-CAGGAGACTTTCATGGATTTATTCTTTAGGAACTTGTC 1684
||||||||||| |||||| | |||||||||||| |||||||||||| | ||||||||||
Sbjct 1617 TTATGGAACAATAACCAA-ACACAGGAGACTTTCGTGGATTTATTCTCTGGGAACTTGTC 1675
Query 1685 A-GTTAGCTGGAAAATTCGATaaaaaaaCAATT-GAGATAGTAGTTACCACCTACCAGGC 1742
| || |||||||||||||||||||| | ||| ||| |||| ||| |||||||||||||
Sbjct 1676 ACATT-TCTGGAAAATTCGATAAAAAATC-ATTGGAGTTAGTCGTTTCCACCTACCAGGC 1733
Query 1743 TGCTGTGCTTTTACTCTTCAACAACACAGAGAGATTAAGCTACACTGAGATCTTGGAGCA 1802
||| |||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 1734 TGCGGTGCTTTTGCTCTTCAACAACGCAGAGAGATTGAGCTACACTGAGATGTTGGAGCA 1793
Query 1803 GCTAAACCTCGGCCATGAAGATCTTGCCAGGCTGCTTCATTCACTATCATGCTTAAAGTA 1862
||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct 1794 GCTAAACCTTAGCCATGAAGATCTTGTCAGGCTGCTTCATTCACTGTCATGCGGGAAGTA 1853
Query 1863 CAAGATTCTTATAAAGGAACCAATGTCGAGAAACATCTCCAACACCGATACCTTTGAATT 1922
|||||||||||||||||||||||||||||||| |||||| || || ||||| ||||||||
Sbjct 1854 CAAGATTCTTATAAAGGAACCAATGTCGAGAACCATCTCTAAAACGGATACGTTTGAATT 1913
Query 1923 CAACTCCAAGTTCACCGATAAGATGAGGAGAATTAGGGTGCCTCTGCCTCCGATGGATGA 1982
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1914 CAACTCCAAGTTCACCGATAAGATGAGGAGAATTAGGGTGCCTCTGCCTCCAATGGATGA 1973
Query 1983 GAGGAAGAAAATTGTTGAAGATGTTGATAAAGATAGACGCTATGCAATTGATGCAGCTCT 2042
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1974 GAGGAAGAAAGTTGTTGAAGATGTTGATAAAGATAGACGCTATGCAATAGATGCAGCTCT 2033
Query 2043 TGTTCGGATCATGAAGAGTAGAAAAGTGTTGGGGCATCAACAGTTGGTCTCTGAATGTGT 2102
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2034 TGTTCGGATCATGAAGAGCAGAAAAGTGTTGGGGCATCAACAGTTAGTCTCTGAATGTGT 2093
Query 2103 TGAGCATCTCAGCAAAATGTTCAAGCCTGATATAAAGATGATAAAGAAACGGATTGAGGA 2162
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 TGAGCATCTTAGCAAAATGTTCAAGCCTGATATAAAGATGATAAAGAAACGGATTGAGGA 2153
Query 2163 CTTGATCAGCAGAGATTACTTGGAGAGGGATACCGACAATCCCAACACTTTCAAGTATTT 2222
|||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 2154 CTTGATCAGCAGAGATTATTTGGAGAGGGATAGCGAAAATCCCAACACTTTCAAGTATGT 2213
Query 2223 GGCTTAG 2229
|||||||
Sbjct 2214 GGCTTAG 2220
> Ahg925091 jgi|Araly1|925091|scaffold_200652.1
Length=719
Score = 320 bits (173), Expect = 3e-86
Identities = 441/568 (78%), Gaps = 27/568 (5%)
Strand=Plus/Plus
Query 119 GTATGCAGCTGTAC-ACGACTGTCC-ACAATCTGTGTACCCAGAAACCTCCTAATGATTA 176
||||| | || ||| || |||| || || || |||| |||||| || |||| | ||||
Sbjct 137 GTATGGAACTTTACAAC-ACTG-CCTACCATATGTGCACCCAG-AA--TCCT-A--ATTA 188
Query 177 CTCACAGCAGATCTATGATCGGTATGGTGGAGT-ATATGTTGATTACAATAAACAAACTG 235
|||||| ||| | || ||| |||| | | ||| || || ||||| | || ||||| |
Sbjct 189 CTCACAACAGCTTTACGATAAGTATCGCGAAGTGAT-TGAAGATTATACTATGCAAACGG 247
Query 236 TGTTGCCGGCTATACGTGAGAAGCATGGTGAATATATGTTGAGAGAGCTTGTTAAGAGAT 295
|| | || || || | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 248 TGCTACCATCTTTAAGGGAGAAGCATGATGAATATATGTTGAGAGAGCTTGTTAAGAGGT 307
Query 296 GGGCCAACCAGAAAATTCTTGTTAGATGGTTATCCC-ACTTCTTCGAATATCTTGACCG- 353
|| ||||| ||| || | |||||| |||| || | | ||| | |||||||| |
Sbjct 308 GGAATAACCATAAACTTATGGTTAGACAGTTAGCCATAAT-CTTTGGTTATCTTGAAGGA 366
Query 354 T--TTTTATACTCGTCGGGG--GTC-TCA-TCCAACACTGAGTGCTGTTGGCTTCATATC 407
| |||| | |||| || | | | | | || ||||||| | |||||||| ||||
Sbjct 367 TACTTTT-T--TCGTTGGAAACG-CATAAATTCATCACTGAGGGAAGTTGGCTTGATATA 422
Query 408 CTTCCGCGACCTGGTTTATCAAGAGTTACAGTCCAAGGCCAAAGACGCTGTACTAGCACT 467
||||| |||||||||||| || ||| | || ||| ||||| ||| |||||| |||||||
Sbjct 423 CTTCCACGACCTGGTTTACCATGAGATGCATTCCTCGGCCACAGAAGCTGTAATAGCACT 482
Query 468 TATTCATAAAGAACGCGAGGGCGAACAGATTGATAGAGCACTATTGAAAAACGTAATAGA 527
|||| |||||||||| ||||||||||| |||||||||| |||| ||| ||| |||||| |
Sbjct 483 TATTGATAAAGAACGTGAGGGCGAACAAATTGATAGAGAACTAGTGAGAAATGTAATACA 542
Query 528 TGTCTATTGTGG-GAATGGGATGGGAGAGCTGGTTAAATACGAAGAGGATTTTGAAAGCT 586
||||| |||| | ||||||||||||| | ||||| |||||||||||||||||||
Sbjct 543 TGTCT-TTGTTGAGAATGGGATGGGATCTATAAAAAAATATGAAGAGGATTTTGAAAGCT 601
Query 587 TCTTGCTTGAAGATTCTGCATCTTACTACTCTCGCAACGCCTCAAGGTGGAACCAGGAGA 646
|| ||||||||||| |||| |||||||| || ||||| || |||||||||| | |||||
Sbjct 602 TCATGCTTGAAGATACTGCTTCTTACTATTCCCGCAAGGCGTCAAGGTGGATCGAGGAGG 661
Query 647 ATTCTTGTCCTGATTACATGATAAAGGC 674
||||||||| |||||||| |||||||||
Sbjct 662 ATTCTTGTCTTGATTACACGATAAAGGC 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87645653745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5