BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03010.1
Length=2099
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311401 jgi|Araly1|311401|fgenesh1_pm.C_scaffold_1000181 3164 0.0
> Ahg311401 jgi|Araly1|311401|fgenesh1_pm.C_scaffold_1000181
Length=1905
Score = 3164 bits (1713), Expect = 0.0
Identities = 1843/1907 (97%), Gaps = 4/1907 (0%)
Strand=Plus/Plus
Query 1 ATGGGACTTGTTACAGTCGGAGAATTGAAGCCAGCTTTCACAGGAAAGAGAGGGTTTCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGACTTGTTACAGTCGGAGAATTGAAGCCAGCTTTCACAGGAAAGAGAGGGTTTCGT 60
Query 61 CTGAATTCAACCATCAGACATGCCTCTGAATGGCCGATATCCGATGTCTCTAGTGATCTG 120
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTGAATTCAAGCATCAGACATGCCTCTGAATGGCCGATATCCGATGTCTCTAGTGATCTT 120
Query 121 ACAGTTCAAGTTGGATCTTCGAGTTTCTGTCTTCATAAGTTTCCTCTTGTGTCTCGGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGTTCAAGTTGGATCTTCGAGTTTCTGTCTTCATAAGTTTCCTCTTGTGTCTCGGAGT 180
Query 181 GGAAAAATCCGAAAGCTTCTCGCGGATCCAAAAATATCGAATGTTTGTCTCTCAAATGCT 240
|||||||||||||||||||||| |||||||||||| |||| | |||||||||| ||||||
Sbjct 181 GGAAAAATCCGAAAGCTTCTCGTGGATCCAAAAATCTCGAGTATTTGTCTCTCGAATGCT 240
Query 241 CCTGGAGGATCAGAGGCTTTTGAGCTCGCAGCTAAGTTCTGTTATGGAATCAACATTGAA 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGGAGGATCTGAGGCTTTTGAGCTCGCAGCTAAGTTCTGTTATGGAATCAACATTGAA 300
Query 301 ATCAACCTTCTTAATATAGCTAAGCTCCGTTGTGCATCTCATTATCTAGAGATGACAGAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ATCAACCTTCTTAATATAGCTAAGCTCCGTTGTGCATCTCATTATCTAGAGATGACTGAG 360
Query 361 GATTTCTCAGAGGAGAATCTCGCTTCCAAAACAGAACATTTCTTGAAAGAGACAATCTTC 420
|||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 361 GATTTCTCCGAGGAGAATCTCGCTGCGAAAACAGAACATTTCTTGAAAGAGACAATCTTT 420
Query 421 CCCAGTATTTTGAATTCCATCATCGTTCTACATCATTGCGAAACCTTAATCCCAGTCTCT 480
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CCGAGTATATTGAATTCCATCATCGTTCTACATCACTGCGAAACCTTAATCCCAGTCTCT 480
Query 481 GAAGATCTCAACTTGGTTAATCGGTTAATCATAGCTGTTGCCAACAATGCCTGCAAAGAA 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 GAAGATCTCAACTTGGTTAATCGGTTAATCATAGCTATTGCCAACAATGCCTGCAAAGAA 540
Query 541 CAGCTAACATCGGGTCTTTTAAAGCTCGATTATTCGTTCTCGGGTACAAATATCGAACCA 600
|||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 541 CAGCTAACATCGGGTCTTTTAAAGCTCGATAATTCGTTTTCGGGTACAAATATTGAACCA 600
Query 601 CAAACTCCATTAGACTGGTGGGGGAAGTCACTAGCTGTTCTGAACCTCGATTTCTTTCAG 660
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 601 GAAACTCCATTAGACTGGTGGGGGAAGTCACTAGCTGTTCTGAATCTTGATTTCTTTCAG 660
Query 661 AGGGTTATCTCTGCGGTTAAGTCTAAAGGGTTAATACAAGACGTGATCAGCAAGATTCTG 720
|| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 AGAGTTGTCTCTGCGGTTAAGTCTAAAGGGTTAATACAAGACGTGATCCGCAAGATTCTG 720
Query 721 ATAAGCTACACGAATAAGTCTCTTCAAGGGCTCATTGTTCGCGATCCGAAA-CTGGAGAA 779
||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 721 ATAAGTTACACGAATAAGTCTCTTCAAGGGCTCATCGTTCGCGATCC-AAAGCTGGAGAA 779
Query 780 AGAAAGGGTTCTTGATTCAGAAGGTAAGAAGAAACAGCGATTGATTGTGGAAACAATTGT 839
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 780 AGAAAGGGTTCTTGATTCAGAATGTAAGAAGAAACAGAGATTGATTGTGGAAACAATTGT 839
Query 840 GAGGTTACTTCCTACACAAGGAAGAAGAAGCTCTGTTCCAATGGCGTTTCTTTCAAGTCT 899
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 840 GAGGTTACTTCCTACACAAGGAAGAAGAAGCTCTGTTCCAATGGCCTTCCTTTCAAGTCT 899
Query 900 TCTCAAAATGGTCATCGCAACATCGTCATCTGCTTCTACAGGATCATGTAGATCAGATCT 959
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 900 TCTCAAAATGGTCATCGCAACATCATCATCTGCTTCTTCAGGATCATGTAGATCGGATCT 959
Query 960 AGAACGAAGAATCGGTCTGCAATTAGACCAAGCCATCCTCGAAGATGTCTTGATTCCGAT 1019
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 AGAACGAAGAATCGGTCTGCAATTAGACCAAGCCATCCTCGAAGACGTCTTGATTCCGAT 1019
Query 1020 AAATCTCAATGGAACAAACAACACCATGTACGACATCGATTCAATCTTGAGAATCTTCTC 1079
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1020 AAATCTCAACGGAACCAACAACACGATGTACGACATTGATTCAATCTTGAGAATCTTCTC 1079
Query 1080 TATATTCTTGAACCTCGATGAAGACGACGAAGAAGAAGAACATCATCATCTTCAATTTAG 1139
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 1080 TATATTCTTGAACCTCGATGAAGATGACGAAGAAGAAGAACATCATCAACGTCAATTTAG 1139
Query 1140 AGATGAAACAGAGATGATCTACGATTTTGACAGCCCCGGGTCTCCAAAACAGAGCTCTAT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 AGATGAAACAGAGATGATCTACGATTTTGACAGCCCCGGGTCTCCAAAACAGAGCTCGAT 1199
Query 1200 CTTGAAAGTATCGAAGCTAATGGATAACTATCTAGCTGAGATAGCTATGGATCCGAATCT 1259
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTTGAAAGTATCAAAGCTAATGGATAACTATCTAGCTGAGATAGCTATGGATCCGAATCT 1259
Query 1260 CACAACCTCAAAGTTCATAGCTTTAGCAGAACTCTTACCAGATCATGCTCGTATCATCAG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CACAACCTCAAAGTTCATAGCTTTAGCAGAACTCTTACCAGATCATGCTCGTATCATCAG 1319
Query 1320 TGATGGACTCTATCGAGCCGTTGACATTTACCTCAAAGTTCATCCGAATATAAAGGATTC 1379
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1320 TGATGGACTCTATCGAGCCGTCGACATTTACCTCAAAGTTCATCCAAATATAAAGGATTC 1379
Query 1380 AGAGCGTTATCGTCTCT-GTAAGACGATAGACTCACAAAAACTATCACAAGAAGCTTGTA 1438
||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1380 AGAGCGTTATCGTCT-TACAAAGACGATAGACTCACAGAAACTATCACAAGAAGCTTGTA 1438
Query 1439 GCCACGCAGCTCAAAACGAGAGATTACCTGTGCAAATGGCCGTACAAGTGTTGTACTTTG 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCCACGCAGCTCAAAACGAGAGATTACCTGTGCAAATGGCCGTACAAGTGTTGTACTTTG 1498
Query 1499 AGCAGATCAGACTCAGAAACGCAATGAGCAGTAGCATAGGTCCTACTCAGTTTCTATTCA 1558
| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1499 AACAGATCAGACTCAGAAACGCAATGAGCAGTGGCATTGGTCCTACTCAGTTTCTATTCA 1558
Query 1559 ACAGTAACTGTCATCAGTTTCCTCAACGGTCAGGAAGTGGAGCAGGAAGTGGAGCAATAT 1618
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ACAGTAACTGTCATCAATTTCCTCAACGGTCAGGAAGTGGAGCAGGAAGTGGAGCAATAT 1618
Query 1619 CTCCTAGAGATAACTATGCGTCAGTGAGGAGAGAAAACAGAGAGCTAAAGCTTGAGGTTG 1678
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1619 CTCCTAGAGATAACTATGCGTCGGTGAGGAGGGAAAACAGAGAGCTGAAGCTTGAGGTTG 1678
Query 1679 CGAGGATGAGGATGAGATTAACTGATCTAGAGAAAGATCATATCTCGATTAAACAAGAAC 1738
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1679 CGAGGATGAGGATGAGATTAACGGATCTAGAGAAAGATCACATCTCGATTAAACAAGAAC 1738
Query 1739 TCGTGAAATCTAATCCAGGGACTAAGCTTTTCAAGTCATTTGCTAAAAAGATAAGCAAAC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TCGTGAAATCTAATCCAGGGACTAAGCTTTTCAAGTCATTTGCTAAAAAGATAAGCAAAC 1798
Query 1799 TCAATTCTCTTTTCAGTTTCAGTAGTCTTAAACCTTCCTTGAGTGGCAAGGCAAGTTCTG 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TCAATTCTCTTTTCAGTTTCAGTAGTCTTAAACCTTCCTTGAGTGGCAAGGCAAGTTCTG 1858
Query 1859 AAAGCCGTTTCTTGTTTCAGAGAAAAAGACGACACTCTGTTTCTTGA 1905
| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGAGCCGTTTCTTGTTTCAGAGAAAAAGACGACACTCTGTTTCTTGA 1905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78961077885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5