BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03020.1 Length=309 Score E Sequences producing significant alignments: (Bits) Value Ahg918965 jgi|Araly1|918965|scaffold_100246.1 499 4e-141 > Ahg918965 jgi|Araly1|918965|scaffold_100246.1 Length=350 Score = 499 bits (270), Expect = 4e-141 Identities = 297/310 (96%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 1 ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCCGTGGTGATATTCAGCAAGACGTCC 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 21 ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCAGTGGTGATATTCAGCAAGACCTCG 80 Query 61 TGCTGTATGAGTCACTCGATCAAGTCGCTTATATCTGGTTACGGTGCGAATTCAACAGTG 120 ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||| Sbjct 81 TGCTGTATGAGTCACACGATCAAGTCGCTCATATCTGGTTACGGTGCGAATCCAACGGTG 140 Query 121 TATGAGCTAGACGAAATGTCTAATGGA-CCAGAGATCGAACGAGCACTTGTAGAGCTTGG 179 ||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| Sbjct 141 TATGAGCTAGACGAAATGTCTAATGGATCC-GAGATCGAACGAGCACTGGTCGAGCTTGG 199 Query 180 GTGCAAACCGACTGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCA 239 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 200 GTGCAAACCGACGGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCA 259 Query 240 ACTTATGTCTCTTCAAGTCAGGAACCAACTAGCTTCGTTGCTCCGAAGAGCTGGAGCCAT 299 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 260 ACTTATGTCTCTTCAAGTCAGGAACCAACTAGCCTCGTTGCTCCGAAGAGCTGGAGCCAT 319 Query 300 ATGGATTTAA 309 |||||||||| Sbjct 320 ATGGATTTAA 329 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10874342865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5