BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03020.1

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918965 jgi|Araly1|918965|scaffold_100246.1                        499    4e-141


> Ahg918965 jgi|Araly1|918965|scaffold_100246.1
Length=350

 Score =  499 bits (270),  Expect = 4e-141
 Identities = 297/310 (96%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCCGTGGTGATATTCAGCAAGACGTCC  60
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  21   ATGGAGAAGATATCAAATTTGTTAGAAGACAAGCCAGTGGTGATATTCAGCAAGACCTCG  80

Query  61   TGCTGTATGAGTCACTCGATCAAGTCGCTTATATCTGGTTACGGTGCGAATTCAACAGTG  120
            ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct  81   TGCTGTATGAGTCACACGATCAAGTCGCTCATATCTGGTTACGGTGCGAATCCAACGGTG  140

Query  121  TATGAGCTAGACGAAATGTCTAATGGA-CCAGAGATCGAACGAGCACTTGTAGAGCTTGG  179
            ||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||
Sbjct  141  TATGAGCTAGACGAAATGTCTAATGGATCC-GAGATCGAACGAGCACTGGTCGAGCTTGG  199

Query  180  GTGCAAACCGACTGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCA  239
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  200  GTGCAAACCGACGGTGCCAGCTGTCTTTATAGGGCAAGAGCTCGTAGGTGGTGCAAATCA  259

Query  240  ACTTATGTCTCTTCAAGTCAGGAACCAACTAGCTTCGTTGCTCCGAAGAGCTGGAGCCAT  299
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  260  ACTTATGTCTCTTCAAGTCAGGAACCAACTAGCCTCGTTGCTCCGAAGAGCTGGAGCCAT  319

Query  300  ATGGATTTAA  309
            ||||||||||
Sbjct  320  ATGGATTTAA  329



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10874342865


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5