BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03030.1
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470280 jgi|Araly1|470280|fgenesh2_kg.1__234__AT1G03030.1 1552 0.0
> Ahg470280 jgi|Araly1|470280|fgenesh2_kg.1__234__AT1G03030.1
Length=1109
Score = 1552 bits (840), Expect = 0.0
Identities = 929/973 (95%), Gaps = 1/973 (0%)
Strand=Plus/Plus
Query 128 ATCTGTGCGTTCATCAATGGAGGTTTCTTCTTTCTCCACTGTACCCAGATACTGTAACTC 187
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 ATCTGTACATCCATCAATGGAGGTTTCTTCTTTCTCCACTGTACCCAGATACTGTAACTC 68
Query 188 ACGCTCCTTTGTTCCAGAATTGTCTCGTTTCAGGGGATTCAAAGTTCACTTATGGGACCA 247
||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 69 ACGCTCCTTTGTTGCAGAATTGTCTCGTTTCAGAGGATTCAACGTTCACTTATGGGACCA 128
Query 248 ATCTCTTGTTCCTCTTCATTTCAGCATTCGAAAACGAAAGAACACCCCTCGTTATTTGAT 307
||||||||||||||||||||| ||| |||||||| |||||| ||||||||||| ||||||
Sbjct 129 ATCTCTTGTTCCTCTTCATTTGAGCTTTCGAAAAAGAAAGACCACCCCTCGTTTTTTGAT 188
Query 308 TTCTTGCAGTCAGAAGAAAGATGTCACTGTTGTTGATGGAAGTTGTATGGATGAGATCTA 367
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 189 TTCTTGCAGTCAGAAGAAAGATGTCACTGTTGTTGATGCAAGTTGTATGGATGAGATATA 248
Query 368 TGATAAGTTGGCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAA 427
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 249 TGATAAGTTGGCGGAACGTCTTGTCCCCACTGCAGCAGCAATGTTTAGCCCCAATCTTAA 308
Query 428 ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAAAGTACAGTAGCAAATGAAGT 487
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 309 ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGAAAAAGCACATTAGCAAATGAAGT 368
Query 488 TGTGCGTCGTGTAAATAAGCTATGGCCTCAGAAAGCTGCTTCTTTTGATGCTGAGGTTAA 547
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 369 TGTGCGTCGTGTAAATAAGCTATGGCCTCAGAAAGCTTCTTCTTTTGATGCTGAGGTTAA 428
Query 548 TCCACCGGATGTTGCTATAGTACTTCCCATGGATGGTTTCCATTTGTATCGTTCGCAACT 607
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 429 GCCGCCGGATGTTGCTATAGTACTTCCCATGGATGGGTTCCATTTGTATCGTTCGCAACT 488
Query 608 CGATGCTATGGAGGATCCCAAAGAAGCCCATGCGAGAAGAGGGGCTCCGTGGACTTTTGA 667
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 489 CGATGCTATGGAGGATCCCAAAGAAGCCCATGCCAGAAGAGGGGCTCCTTGGACTTTTGA 548
Query 668 TCCTGCACTACTGCTTAACTGTTTAAAGAAGCTGAAAAACGAGGGCTCAGTTTATGTGCC 727
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TCCTGCGCTACTACTTAACTGTTTAAAGAAGCTGAAAAACGAGGGCTCAGTTTATGTGCC 608
Query 728 ATCATTTGATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAGCA 787
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 ATCATTCGATCATGGAGTTGGGGATCCAGTTGAAGATGATATCTTTGTTAGCCTCCAGCA 668
Query 788 TAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACAT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TAAAGTGGTAATTGTAGAAGGAAACTACATCTTGTTAGAAGAAGGGTCTTGGAAAGACAT 728
Query 848 CTCAGATATGTTTGATGAGAAATGGTTCATCGATGTGAATCTCGATACAGCAATGCAACG 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CTCAGATATGTTTGATGAGAAATGGTTCATCGATGTGAATCTCGATACAGCAATGCAACG 788
Query 908 TGTTGAAAACCGGCATATCTCAACTGGTAAACCCCCAGATGTTGCTAAATGGCGGGTGGA 967
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 789 TGTTGAAAACCGGCATATCTCAACTGGTAAACCACCGGATGTTGCTAAATGGCGGGTGGA 848
Query 968 TTATAATGACCGACCCAACGCAGAGCTGATAATAAAGTCAAAGACAAACGCTGATCTACT 1027
|||||| || ||||| ||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 849 TTATAACGATCGACCAAACGCTGAGCTGATAATAAAGTCAAAGACAAACGCTGATTTACT 908
Query 1028 GATCAGATCTATGAACATTTGAATCTACTTTCAAGGGGGCTATTGGACGAAA-CAGAATA 1086
|||||||||||| ||||||||||||||||||| ||||||||||| | ||| |||| ||
Sbjct 909 GATCAGATCTATCAACATTTGAATCTACTTTCTTGGGGGCTATTGCATAAAAACAGAGTA 968
Query 1087 AGATGAATAACAA 1099
||||| |||||||
Sbjct 969 AGATGGATAACAA 981
Score = 134 bits (72), Expect = 2e-30
Identities = 94/104 (90%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 1140 ACAATGTCTTTTTCTTGCAACGGAAACTTCCAATAAGCAA-TTTGTTCGCAGTAAACTGT 1198
|||||||||||| |||| || ||||||||||| ||||||| |||||| ||||||||||||
Sbjct 978 ACAATGTCTTTTCCTTGTAATGGAAACTTCCAGTAAGCAATTTTGTTTGCAGTAAACTGT 1037
Query 1199 GTATGCT-AGTGTTCTCTGCATACTCACGGATTTTGTTCAGACA 1241
||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1038 GTATGCTAATTG-CCTCTGCATACTCACGGATTTTGTTCAGACA 1080
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1316 ATCAGTCCAGCTCCCAACTATATCATTTTG 1345
||||||||||||||||||||||||||||||
Sbjct 1080 ATCAGTCCAGCTCCCAACTATATCATTTTG 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5