BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03040.1
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470281 jgi|Araly1|470281|fgenesh2_kg.1__235__AT1G03040.1 1808 0.0
Ahg490301 jgi|Araly1|490301|fgenesh2_kg.6__3435__AT4G02590.2 614 7e-175
> Ahg470281 jgi|Araly1|470281|fgenesh2_kg.1__235__AT1G03040.1
Length=1369
Score = 1808 bits (979), Expect = 0.0
Identities = 1283/1414 (91%), Gaps = 84/1414 (6%)
Strand=Plus/Plus
Query 1 GTCTGTGTCTCTTCGTCCTCATTAGCTTAAGCATCATCATTCT-C-TCACCT-A-ACAAC 56
|||| |||||||||||||||||||||||||||||||||||||| | |||||| | |||||
Sbjct 1 GTCTCTGTCTCTTCGTCCTCATTAGCTTAAGCATCATCATTCTCCTTCACCTAATACAAC 60
Query 57 TCCACACAAGATTCTTCGCATGGAAAGTTGTTCTTCGACTTCTCTTCTCTAACTCGCTAT 116
|||||| |||| |||||||||||| |||||||||||| | || ||| ||||||||||
Sbjct 61 TCCACAAAAGA---TTCGCATGGAAACTTGTTCTTCGAC-T-TC-TCTATAACTCGCTAC 114
Query 117 CTTTTAACTCACCCAGCTCCACTGAGTCGAAAATTTCAAACCTTTACTCGTTTCCTTCAT 176
|||| |||||||||| ||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 115 CTTTAAACTCACCCAACTCTACTGAGTCGAAAATTTCAAACCTTTACTCGTTT-C--CAT 171
Query 177 GGCTAATAACAACAACATCCCACATGATAGCATCTCCGATCCATCTCCTACCGACGATTT 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGCTAATAACAACAACAACCCACATGATAGCATCTCCGATCCATCTCCTACCGACGATTT 231
Query 237 CTTCGAGCAGATCCTCGGGCTTTCCAACTTCTCCG-GTTCTTCAGGTTCTGGTCTCTCTG 295
||| ||||||||||||||||||||||||||||| | | ||||| ||||||||||| ||||
Sbjct 232 CTTTGAGCAGATCCTCGGGCTTTCCAACTTCTCTGCG-TCTTCTGGTTCTGGTCTTTCTG 290
Query 296 GAA-T--C----G-----GCGGCGTGGGTCCACCTCCGATGATGCTTCAGCTTGGTTCAG 343
||| | | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAATTGGCGGAGGATTAAGCGGCGTGGGTCCACCTCCGATGATGCTTCAGCTTGGTTCAG 350
Query 344 GCAACGAAGGGAATCATAATCATATGGGTGCCATTGGAGGAGGTGGACCTGTAGGGTTTC 403
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GCGACGAAGGGAATCATAATCATATGGGTGCCATTGGAGGAGGTGGACCTGTAGGGTTTC 410
Query 404 ATAATCAGATGTTTCCGTTGGGATTAAGTCTCGATCAAGGGAAAGGACATGGCTTTCTTA 463
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 411 ATAATCAGATGTTTCCGTTGGGATTAAGTCTTGATCAAGGGAAAGGACATGGCTTTCTTA 470
Query 464 AACCTGAT-G-----A---AACTGGTAAACGTTTCCAAGACGATGTTCTTGATAATCGAT 514
|||||||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 471 AACCTGATGGTATTCATGGAACTGGTAAACGTTTCCAAGATGATGTTCTTGATAATC--- 527
Query 515 GTTCCTCTATGAAACCTATTTTCCATGGGCAGCCAATGTCACAGCCAGCTCCACCAATGC 574
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 G------TATGAAACCTGTTTTCCATGGGCAGCCAATGTCACAGCCAGCTCCACCAATGC 581
Query 575 CGCATCAACAGTCTACTATTCGGCCTAGAGTTAGGGCTAGGCGAGGTCAAGCTACCGATC 634
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 582 CGCATCAACAGTCTACAATTCGACCTAGAGTTAGGGCTAGGCGAGGTCAAGCCACTGATC 641
Query 635 CACATAGCATCGCTGAGAGGCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGC 694
||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 642 CACATAGCATCGCTGAGAGGCTCCGTAGAGAAAGAATAGCAGAACGGATCAGGGCGTTGC 701
Query 695 AGGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGACGAGATTGTCG 754
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 702 AGGAACTTGTACCTACCGTTAACAAGACAGATAGGGCTGCTATGATCGATGAGATTGTGG 761
Query 755 ATTATGTAAAGTTTCTCAGGCTCCAAGTTAAGGTCCTGAGCATGAGCCGTCTTGGTGGAG 814
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 762 ATTATGTTAAGTTTCTCAGGCTCCAAGTTAAGGTCTTGAGCATGAGCCGTCTTGGTGGAG 821
Query 815 CCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTATCTTCATCAGTTGAGGATGAGA 874
||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |
Sbjct 822 CCGGTGCTGTCGCACCACTAGTCACTGAAATGCCATTGTCATCATCAACTGAGGATGAAA 881
Query 875 CGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGAGGCAAGTGGCTAAGCTGA 934
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 882 CGCAGGCCGTGTGGGAGAAATGGTCAAACGATGGGACAGAGCGGCAAGTGGCTAAGCTGA 941
Query 935 TGGAAGAAAACGTTGGAGCAGCGATGCAACTTTTGCAATCAAAGGCTCTTTGCATAATGC 994
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 942 TGGAAGAAAACGTTGGAGCAGCGATGCAGCTTTTGCAATCAAAGGCTCTTTGCATAATGC 1001
Query 995 CGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCACCAGACACATCTTCTTCAATCG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCACCAGACACATCTTCTTCAATCG 1061
Query 1055 TCAAACCAGAGATGAATCCTCCACCGTAGATT-T-TTGT-TC-A-----TCCAACGGTCC 1105
||||||||||||||||||||||||| |||||| | || | || | |||||||||||
Sbjct 1062 TCAAACCAGAGATGAATCCTCCACCCTAGATTCTATTTTATCGACAGCATCCAACGGTCC 1121
Query 1106 CCAGCTGATGATTGACATTTTGCTCTGTTTCCCACTACTAGACTTTTGTGACTCATGAAA 1165
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1122 ACAGCTGAAGATTGACATTTTGCTCTGTTTCCCACTACTAGACTTTTGTGACTGATGAAA 1181
Query 1166 GGTAAGTAAAAAGGCATTGGAGATGGAATCTAAGTAGGATTTGTGCAGTAAAGAAGTAAA 1225
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1182 GGTAAGTAAAAAGGCATTGGAGATGGAATCTAAGTAGGATTTGTGCAGTAAA-AGGAAAA 1240
Query 1226 ACGGGATCTGTCAAAAGAAGGAAAAAGCTCTCGCTTGCTTGGCTAGTATTT-ATCATTTT 1284
| | ||| | | || | ||||| | ||| ||||| ||||||||
Sbjct 1241 A-GC--TCT--C----G----------CT-T-GCTTG---G-CTAATATTTTATCATTTT 1275
Query 1285 GATGAAAGTAACTCTTTTTTGTTCAAAGACTTTAGTGTGATTTTCAGGACCAAGGGCTTT 1344
|| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1276 GACGAAAGTAACTCTTTTTGGTTCAAAGACTTTAGTGTGATTTTCAGGACGAAGGGCTTT 1335
Query 1345 GAGGGTAGT---GCTAGCTGTAGTAATAGTAATG 1375
||||||||| ||||||||||||||||||||||
Sbjct 1336 GAGGGTAGTAAAGCTAGCTGTAGTAATAGTAATG 1369
> Ahg490301 jgi|Araly1|490301|fgenesh2_kg.6__3435__AT4G02590.2
Length=1396
Score = 614 bits (332), Expect = 7e-175
Identities = 668/819 (82%), Gaps = 68/819 (8%)
Strand=Plus/Plus
Query 314 CACCTCCGATGATGCTTCAGCTT-GGTTCAGGCAACGAAGGGAATCATAATCATATGGGT 372
|||| ||||||||||| ||| || ||||| || | | | ||| | | ||||||||||
Sbjct 292 CACCGCCGATGATGCTGCAG-TTGGGTTCCGG--A-G-A-TGAAGGA-AGTCATATGGGT 344
Query 373 GCCATT-GGAGGAGGTGGACC-TGTAGGGTTTCATAATCAGATGTTTCCGTT-GGGATTA 429
| | || |||||| ||||||| | |||||||| |||||||||||||| || ||| |||
Sbjct 345 GGC-TTAGGAGGAAGTGGACCAACT-GGGTTTCACAATCAGATGTTTCCTTTAGGG-TTA 401
Query 430 AGTCTCGATCAAGGGAAAGGACATGGCTTTCTTAAACCTG-ATGA-AAC-T-G--GT--- 480
||||| |||||||||||||||| ||||||||||| ||||| | || || | | ||
Sbjct 402 AGTCTTGATCAAGGGAAAGGACCTGGCTTTCTTAGACCTGAAGGAGGACATGGAAGTGGC 461
Query 481 AAACGTTTC-CAAGACGATGTTCTTGATAATCGATGTTCCTCTATGAAACCTATTTTCCA 539
||| | ||| | ||| |||||| |||||||||||||||| |||||||||||| |||||||
Sbjct 462 AAAAGATTCTC-AGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTGTTTTCCA 520
Query 540 TGGGCAGCCAATGTC-ACAGCCAGCTCCACCAATGCCGCATCA-A-CAGTCTAC-T--AT 593
|||||||| ||| | |||||||| |||| || | ||| || | ||| |||| | ||
Sbjct 521 CGGGCAGCCTATG-CAACAGCCAG---CACC-AT-CGGCACCACATCAGCCTACATCAAT 574
Query 594 TCGGCCTAGAGTTAGGGCTAGGCGAGGTCAAGCTACCGATCCACATAGCATCGCTGAGAG 653
|| ||||| ||| | |||||||| ||||| ||||| |||||||| |||||||||||| |
Sbjct 575 CCGCCCTAGGGTTCGAGCTAGGCGTGGTCAGGCTACTGATCCACACAGCATCGCTGAGCG 634
Query 654 GCTCCGAAGGGAAAGAATAGCAGAACGGATCAGGTCGTTGCAGGAACTTGTACCTACCGT 713
||| || ||||||||||||||||||||||||||| || |||||||||| |||||||| ||
Sbjct 635 GCTACGTAGGGAAAGAATAGCAGAACGGATCAGGGCGCTGCAGGAACTCGTACCTACTGT 694
Query 714 TAACAAGACAGATAGGGCTGCTATGATCGACGAGATTGTCGATTATGTAAAGTTTCTCAG 773
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 695 GAACAAGACCGATAGAGCTGCTATGATCGATGAGATTGTCGATTATGTAAAGTTTCTCAG 754
Query 774 GCTCCAAGTTAAGGTCCTGAGCATGAGCCGTCTTGGTGGAGCCGGTGCTGTCGCACCACT 833
||||||||||||||| ||||||||||||| |||||||||||||| || || || |||||
Sbjct 755 GCTCCAAGTTAAGGTTTTGAGCATGAGCCGACTTGGTGGAGCCGGCGCGGTTGCTCCACT 814
Query 834 AGTCACTGAAATGCCA-TTATCTTCATCAGTTGAGGATGAGACGC---A-GG-------- 880
|| ||||| ||||| || || ||||||||||||||||| ||| | ||
Sbjct 815 TGTTACTGATATGCCTCTT-TCATCATCAGTTGAGGATGAAACGGGTGATGGTGGAAGGA 873
Query 881 C-C-GT-----G--TGGGAGAAATGGTCAAACGATGGGACAGAGAGG-CAAGTGGCTAAG 930
| | | | |||||||||||||| ||||||||||| || | | |||||||||||
Sbjct 874 CTCCGCAACCCGCATGGGAGAAATGGTCTAACGATGGGACTGA-ACGTCAAGTGGCTAAA 932
Query 931 CTGATGGAAGAAAACGTTGGAGCAGCGATGCAACTT-TTGCAATCAAAGGCTCTTTGCAT 989
|||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||| ||
Sbjct 933 CTGATGGAAGAAAATGTTGGAGCCGCGATGCAGCTTCTT-CAATCAAAGGCTCTTTGTAT 991
Query 990 AATGCCGATCTCATTGGCAATGGCGATTTACCATTCTCAGCCACCAGACACATCTTCTTC 1049
||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||
Sbjct 992 GATGCCAATCTCATTGGCAATGGCAATTTACCATTCTCAGCCTCCGGATACATCTTC--- 1048
Query 1050 AATCGTCAAACCAGAGATGAATCCTCCACCGTAG-ATTT 1087
| | ||||| ||||||| ||||||||||| |||| ||||
Sbjct 1049 AGTGGTCAAGCCAGAGACGAATCCTCCACAGTAGGATTT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54469050350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5