BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03055.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470283 jgi|Araly1|470283|fgenesh2_kg.1__237__AT1G03055.1 1397 0.0
> Ahg470283 jgi|Araly1|470283|fgenesh2_kg.1__237__AT1G03055.1
Length=900
Score = 1397 bits (756), Expect = 0.0
Identities = 840/881 (95%), Gaps = 3/881 (0%)
Strand=Plus/Plus
Query 41 ATGAACACTAAGCTATCACTTTCTCAGACCAAAATCTTCACTTTCACAACTTGGTTCAAC 100
|||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||
Sbjct 21 ATGAACACTAAGCTATCACTTTCTCAGACCAAGATCCTCACTTTCACAACTCGATTCAAC 80
Query 101 GATACTCGAAGTGGCTTAGATAGACGCTCAAGCATTTCCCCGACTCTCTGTTCAAAGCCC 160
|||||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 81 GATACTCGAAGTGGCTTAGATAGACGCTCAAGCATTTCCCCGACTCTCAGCTCCAAGCCT 140
Query 161 GTCTACTCCGGAAAACTCAAGGCTGCAAAAGAGACAGCAAGAATCGAGACATCGAATACG 220
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 141 GTCTACTCCGGTGAACTCAAGGCTGCAAAAGAGACAGCAAGAATTGAGCCATCGAATACT 200
Query 221 AAGAATGCGAGTATTGAGGACAGCTTCTTCTCGAAAATTGCAATTAATTATCTATCAAAG 280
|||||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||
Sbjct 201 AAGAATGCCAGTATTGAGGACAGCTTTTTCTCGAAAATTGCAATCAATTATTTATCAAAG 260
Query 281 AATCTTCAAGACGCAGCTGGGATTAGTAGTAGCAGTAAGAGTACCGATTATGATAGGTTA 340
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AATCTTCAAGATGCAGCAGGGATTAGTAGTAGCAGTAAGAGTACCGATTATGATAGGTTA 320
Query 341 GTGGATACGGCAACTAGGGTTTCGCGTAACTTTGACACCAAGCAACAACATGAGTTTGTT 400
||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 321 GTGGACACGGCAACTACGGTTGCGCGTAACTTTGACACCAAGCAACAACATGAGTTTGTT 380
Query 401 CTTAGCTCTTTGGACAGAGCATTACCGACAGTAATAAGCTCCTTGATCAAAATGGCATTT 460
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 381 CTTAGCTCTTTGGACAGAGCGTTACCGACAGTGATAAGCTCCTTGATCAAAATGGCATTT 440
Query 461 CCACCTTCAAAAGTCTCGAGGGAGCTCTTCGCTCTATTCACGACAATATCTTTCGCTTGG 520
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CCACCTTCAAAACTCTCGAGGGAGCTCTTCGCTCTATTCACGACAATATCTTTCGCTTGG 500
Query 521 CTTGTTGGACCTTCAGAGGTGAGGGAGACTGAGGTTAATGGAAGAAAAGAGAAGAGTGTT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTTGTTGGACCTTCAGAGGTGAGGGAGACTGAGGTTAATGGAAGAAAAGAGAAGAGTGTT 560
Query 581 GTGTACATAGAGAAGTGCAGGTTTCTTGAACAGTCAAATTGTGTTGGCATGTGCACTCAT 640
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 561 GTGTACATAGAGAAGTGCAGGTTTCTTGAGCAGTCAAATTGTGTTGGTATGTGCACTCAT 620
Query 641 ATTTGTAAAATTCCATCCCAAATCTTCATCAAAAACTCACTGGGAATGCCTATCTACATG 700
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 621 ATTTGTAAGATTCCATCCCAAATCTTCATCAAAAACTCACTTGGAATGCCTATCTACATG 680
Query 701 GAGCCCGATTTTAATGATCTTAGCTGTAAAATGATGTTTGGTCGGGAGCCTCCAGAGATC 760
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 681 GAGCCCGATTTTAATGATCTTAGCTGTAAGATGATGTTTGGTCGGGAGCCTCCAGAGATC 740
Query 761 GAAGATGATCCTGCTATGAAACAACCATGCTTTGAATTCTGCAAATCAAACAAAAGCTAC 820
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTAGATGATCCTGCTATGAAACAACCATGCTTTGAATTCTGCAAATCAAACAAAAGCTAT 800
Query 821 GGTGTGAAGCATTAGAACTAGTACTAGAGCGATTAGATA-AATTGTGATATCAAAACATA 879
|||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 801 GGTGTGAAGCATTAGAGCTAGTATTAGAGAGATTAGATATAATTGTGATATCAAAACATA 860
Query 880 TTTAAGTTTTTCTTTTAAAG-TCATACCAGAGATTACAATT 919
| |||||||||||||||||| | |||||||| ||||||||
Sbjct 861 TATAAGTTTTTCTTTTAAAGGT-ATACCAGATCTTACAATT 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5