BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03090.2 Length=2606 Score E Sequences producing significant alignments: (Bits) Value Ahg470289 jgi|Araly1|470289|fgenesh2_kg.1__243__AT1G03090.2 3975 0.0 > Ahg470289 jgi|Araly1|470289|fgenesh2_kg.1__243__AT1G03090.2 Length=2560 Score = 3975 bits (2152), Expect = 0.0 Identities = 2308/2385 (97%), Gaps = 4/2385 (0%) Strand=Plus/Plus Query 8 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTTCGAC 67 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTCCGAC 60 Query 68 GGAATGTTCGTCGGAAAAATCACTCGATGCTCGTGAGATATATTTCCGGCTCCGCATCGA 127 |||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||||||||| Sbjct 61 GGAATGTTCGCCGGAAAAATAACTCAATGCTCCTGAGATATATTTCCGACTCCGCATCGA 120 Query 128 TGAAGCCTAAGGAGCAATGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 187 | ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTAAGCCTAAGGATCGTTGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 180 Query 188 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 240 Query 248 CTGATAGAGATTCGCTCCATGTGAAATCTGCAGACGAAGCGGTACGGATTGGCCCGCCCT 307 |||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 241 CTGATAAAGATTCGCTCCACGTGAAATCTGCAGACGAAGCGGTTCGGATTGGCCCGCCCT 300 Query 308 CGGCTAGACTTAGTTACCTCAGCGGTGTGACTATCATGGAGGCAGCGGCTCGGACTGGTG 367 ||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 301 CGGCTAGGCTCAGTTACCTCAGCGGTGCGACTATCATGGAGGCAGCGTCTCGGACTGGTG 360 Query 368 CACAGGCAATACACCCTGGCTATGGGTTCTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 427 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 361 CACAGGCAATACATCCTGGCTATGGTTTTTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 420 Query 428 GTGAGGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCTATTAGAGACATGGGTG 487 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 421 GTGAAGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCAATTAGAGACATGGGTG 480 Query 488 ATAAAAGTGCATCCAAGAGAATTATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 547 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 481 ATAAAAGTGCATCCAAGAGAATAATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 540 Query 548 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCTGAAAAGATTGGATACCCTA 607 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 541 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCCGAAAATATTGGATACCCTA 600 Query 608 TAATAATCAAGCCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGGGA 667 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 601 TAATAATCAAACCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGAGA 660 Query 668 AGGATTTTGCTGACTCGTTTTT-GGGTGCCCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 726 |||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 661 AGGATTTTGCTGACTCGTTTTTAGGG-GCTCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 719 Query 727 AACACTATTCTTCTCGAGAAATACATTACTCGACCGAGGCATATAGAAGTCCAGATATTT 786 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 720 AACACTATTCTTCTCGAGAAATACATCACTCGACCGAGGCATATCGAAGTCCAGATATTT 779 Query 787 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 839 Query 847 CACCAAAAGATTATTGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 906 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CACCAAAAGATTATCGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 899 Query 907 TTAGGCCAAGCTGCTGTCTCTGCGGCACGGGCAGTTGGATATTATAATGCTGGGACGGTG 966 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 900 TTAGGCCAAGCTGCTGTCTCTGCCGCACGGGCAGTTGGATATTACAATGCTGGGACGGTG 959 Query 967 GAATTTATAGTTGACACCGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1026 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GAATTTATAGTTGACACTGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1019 Query 1027 CAGGTCGAACATCCTGTAACTGAGATGATTGTTGGTCAAGATCTTGTGGAATGGCAAATT 1086 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 1020 CAGGTCGAACATCCTGTAACCGAGATGATTGTTGGTCAAGATCTTGTAGAATGGCAAATT 1079 Query 1087 CGGGTTGCCAATGGGGAACCTCTCCCCTTAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1146 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1080 CGGGTTGCCAATGGGGAACCTCTCCCCATAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1139 Query 1147 GCCTTTGAGGCCAGGATATATGCTGAAAACGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1206 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1140 GCCTTTGAGGCCAGGATATATGCTGAAAATGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1199 Query 1207 GTCCTCAATCATTATCGCCCTGTTGCAGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1266 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1200 GTCCTCAATCATTATCGCCCTGTTGCTGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1259 Query 1267 GAGCAAGGAGACACTGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1326 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1260 GAACAAGGAGACACAGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1319 Query 1327 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1379 Query 1387 GCAGGTGTACCTACGAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1446 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 GCAGGTGTACCTACAAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1439 Query 1447 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1499 Query 1507 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1559 Query 1567 GCTGCTTGTATCTCCACAATCGAGCATTCTACTTGGAATGAAAGTAATCATGGGAAAGTT 1626 |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || Sbjct 1560 GCTGCTTGTATCTCCACAATCGAGCATTCTGCTTGGAATGAAAGTAGTCATGGGAAACTT 1619 Query 1627 CCATCGATATGGTATTCGAATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1686 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 CCATCGATATGGTATTCTCATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1679 Query 1687 GAGCTAGAATGGAATAATGAATGCGAGGGAACTGGCTCTAACCTCATATCACTCGGTGTA 1746 ||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1680 GAGGTAGAGTGGAATAATGAATGCGAGGGAGCTGGCTCTAACCTTATATCACTCGGTGTA 1739 Query 1747 AGATATCAACCAGATGGAAGCTATCTCATTGAGGAAGGCAATGATTCTCCAAGTTTAGAA 1806 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1740 ATATATCAACCAGATGGAAGCTATCTCATTCAGGAAGGCAATGATTCTCCAAGTTTAGAA 1799 Query 1807 CTCAGAGTAACACGAGCAGGAAAGTGCGATTTTAGAGTTGAAGCGGCCGGATTGAGCATG 1866 |||||||||| |||| |||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1800 GTCAGAGTAACTCGAGAAGGAAATTGCGATTTTAGAGTTGAAGCGGCTGGATTGAGCATG 1859 Query 1867 AATGTTAGTCTAGCTGCGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1926 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1860 AATGTTAGTCTAGCCACGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1919 Query 1927 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1986 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1920 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1979 Query 1987 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1980 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2039 Query 2047 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTCGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2106 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2040 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTTGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2099 Query 2107 CCTATATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2166 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2100 CCTGTATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2159 Query 2167 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2160 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2219 Query 2227 AGGATCAAAGGGTAAATAACACGATTTGCGATTGATCAA-CC-ATTCGCTGGCTTACGCG 2284 || |||||||| ||||||||||||||||||||||||||| || || | ||||||||| || Sbjct 2220 AGAATCAAAGGATAAATAACACGATTTGCGATTGATCAAACCCATGCTCTGGCTTACCCG 2279 Query 2285 AAACCTGAACTAATAAGCATTTGGGTGTGTATATAAACCGAAATCTTACAAAAGATAAAT 2344 |||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2280 AAACCTCAACTAATACGCATTTGGGTGTGTATATAAACAGAAATCTTACAAAAGATAAAT 2339 Query 2345 AAATCCAAAGCTTTATAAATGTTTTTACTGCCTCTATATAGATCT 2389 |||||||||||||||| ||||||| | |||||||||||||||||| Sbjct 2340 AAATCCAAAGCTTTATCAATGTTTGTGCTGCCTCTATATAGATCT 2384 Score = 294 bits (159), Expect = 2e-78 Identities = 169/174 (97%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 2433 TGATTACATTAATAATCAAGATAGTCCGAGCCATTTCTTGAATACTAAACCAGCTTCTCT 2492 |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 2387 TGATTACATTAATAATCAAGTTAGTCCGAGCCATTTCTTGAATACTAAACCCGCTTCTCT 2446 Query 2493 CTTCTTGAGCTGAGACTCGCTCTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2552 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 2447 CTTCTTGAGCTGAGACTCACTTTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2506 Query 2553 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATAtttttttt 2606 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2507 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTCTTTTT 2560 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98272832100 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5