BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03090.2
Length=2606
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470289 jgi|Araly1|470289|fgenesh2_kg.1__243__AT1G03090.2 3975 0.0
> Ahg470289 jgi|Araly1|470289|fgenesh2_kg.1__243__AT1G03090.2
Length=2560
Score = 3975 bits (2152), Expect = 0.0
Identities = 2308/2385 (97%), Gaps = 4/2385 (0%)
Strand=Plus/Plus
Query 8 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTTCGAC 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CACTCGGAAAATTCGAAAATCGAGATCAAATGTCGATGATGACGGTGTGGGCACTCCGAC 60
Query 68 GGAATGTTCGTCGGAAAAATCACTCGATGCTCGTGAGATATATTTCCGGCTCCGCATCGA 127
|||||||||| ||||||||| |||| |||||| ||||||||||||||| |||||||||||
Sbjct 61 GGAATGTTCGCCGGAAAAATAACTCAATGCTCCTGAGATATATTTCCGACTCCGCATCGA 120
Query 128 TGAAGCCTAAGGAGCAATGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 187
| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAAGCCTAAGGATCGTTGTATTGAGAAGATTTTGGTGGCGAACAGAGGCGAGATTGCTT 180
Query 188 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCCGGATCATGAGAACGGCGAAGCGTTTAGGGATTCAGACCGTTGCGGTTTACAGTGACG 240
Query 248 CTGATAGAGATTCGCTCCATGTGAAATCTGCAGACGAAGCGGTACGGATTGGCCCGCCCT 307
|||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 CTGATAAAGATTCGCTCCACGTGAAATCTGCAGACGAAGCGGTTCGGATTGGCCCGCCCT 300
Query 308 CGGCTAGACTTAGTTACCTCAGCGGTGTGACTATCATGGAGGCAGCGGCTCGGACTGGTG 367
||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 301 CGGCTAGGCTCAGTTACCTCAGCGGTGCGACTATCATGGAGGCAGCGTCTCGGACTGGTG 360
Query 368 CACAGGCAATACACCCTGGCTATGGGTTCTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 427
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 361 CACAGGCAATACATCCTGGCTATGGTTTTTTGTCAGAAAGTTCTGACTTTGCCCAACTCT 420
Query 428 GTGAGGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCTATTAGAGACATGGGTG 487
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 GTGAAGATTCGGGTCTAACATTCATTGGACCTCCAGCATCTGCAATTAGAGACATGGGTG 480
Query 488 ATAAAAGTGCATCCAAGAGAATTATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 547
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 ATAAAAGTGCATCCAAGAGAATAATGGGAGCTGCTGGAGTTCCTCTCGTGCCTGGATATC 540
Query 548 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCTGAAAAGATTGGATACCCTA 607
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 541 ATGGCCATGAGCAAGATATTGATCATATGAAGTCAGAAGCCGAAAATATTGGATACCCTA 600
Query 608 TAATAATCAAGCCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGGGA 667
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 TAATAATCAAACCAACACATGGAGGTGGGGGGAAGGGAATGAGGATAGTGCAAAGTGAGA 660
Query 668 AGGATTTTGCTGACTCGTTTTT-GGGTGCCCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 726
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct 661 AGGATTTTGCTGACTCGTTTTTAGGG-GCTCAACGTGAAGCTGCTGCTTCTTTTGGCGTT 719
Query 727 AACACTATTCTTCTCGAGAAATACATTACTCGACCGAGGCATATAGAAGTCCAGATATTT 786
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 720 AACACTATTCTTCTCGAGAAATACATCACTCGACCGAGGCATATCGAAGTCCAGATATTT 779
Query 787 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTGACAAACATGGAAATGTTCTTCATCTATACGAAAGGGATTGCAGTGTGCAAAGAAGA 839
Query 847 CACCAAAAGATTATTGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 906
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CACCAAAAGATTATCGAAGAAGCTCCTGCGCCTAATATATCTGAAAAGTTCCGCGCAAAC 899
Query 907 TTAGGCCAAGCTGCTGTCTCTGCGGCACGGGCAGTTGGATATTATAATGCTGGGACGGTG 966
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 900 TTAGGCCAAGCTGCTGTCTCTGCCGCACGGGCAGTTGGATATTACAATGCTGGGACGGTG 959
Query 967 GAATTTATAGTTGACACCGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1026
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAATTTATAGTTGACACTGAGTCTGATCAATTTTATTTTATGGAAATGAACACCCGTCTA 1019
Query 1027 CAGGTCGAACATCCTGTAACTGAGATGATTGTTGGTCAAGATCTTGTGGAATGGCAAATT 1086
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1020 CAGGTCGAACATCCTGTAACCGAGATGATTGTTGGTCAAGATCTTGTAGAATGGCAAATT 1079
Query 1087 CGGGTTGCCAATGGGGAACCTCTCCCCTTAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1146
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 CGGGTTGCCAATGGGGAACCTCTCCCCATAAGCCAATCCGAGGTGCCAATGTCAGGTCAT 1139
Query 1147 GCCTTTGAGGCCAGGATATATGCTGAAAACGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1206
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 GCCTTTGAGGCCAGGATATATGCTGAAAATGTTCCAAAAGGATTTCTTCCTGCAACTGGG 1199
Query 1207 GTCCTCAATCATTATCGCCCTGTTGCAGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1266
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1200 GTCCTCAATCATTATCGCCCTGTTGCTGTCTCACCATCAGTTCGGGTTGAAACTGGAGTT 1259
Query 1267 GAGCAAGGAGACACTGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1326
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAACAAGGAGACACAGTTAGCATGCACTATGATCCTATGATTGCAAAGCTTGTTGTCTGG 1319
Query 1327 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGAGGTAATCGTGGCGAAGCTTTAGTGAAACTGAAGGATTGCTTGTCTAACTTTCAGGTA 1379
Query 1387 GCAGGTGTACCTACGAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1446
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GCAGGTGTACCTACAAACATAAATTTCCTTCAAAAACTTGCTAGTCATAAGGAGTTTGCA 1439
Query 1447 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTGGGCAATGTAGAAACTCATTTTATTGAGCACCATAAAAGTGATCTATTTGCTGACGAA 1499
Query 1507 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGCAATCCAGCTGCAACAGAAGTGGCATACAAGGCAGTCAAGCATAGTGCAGCATTGGTG 1559
Query 1567 GCTGCTTGTATCTCCACAATCGAGCATTCTACTTGGAATGAAAGTAATCATGGGAAAGTT 1626
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 1560 GCTGCTTGTATCTCCACAATCGAGCATTCTGCTTGGAATGAAAGTAGTCATGGGAAACTT 1619
Query 1627 CCATCGATATGGTATTCGAATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1686
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CCATCGATATGGTATTCTCATCCTCCTTTTAGGGTCCATCATGAAGCCAAACAAACCATT 1679
Query 1687 GAGCTAGAATGGAATAATGAATGCGAGGGAACTGGCTCTAACCTCATATCACTCGGTGTA 1746
||| |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1680 GAGGTAGAGTGGAATAATGAATGCGAGGGAGCTGGCTCTAACCTTATATCACTCGGTGTA 1739
Query 1747 AGATATCAACCAGATGGAAGCTATCTCATTGAGGAAGGCAATGATTCTCCAAGTTTAGAA 1806
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1740 ATATATCAACCAGATGGAAGCTATCTCATTCAGGAAGGCAATGATTCTCCAAGTTTAGAA 1799
Query 1807 CTCAGAGTAACACGAGCAGGAAAGTGCGATTTTAGAGTTGAAGCGGCCGGATTGAGCATG 1866
|||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1800 GTCAGAGTAACTCGAGAAGGAAATTGCGATTTTAGAGTTGAAGCGGCTGGATTGAGCATG 1859
Query 1867 AATGTTAGTCTAGCTGCGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1926
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 AATGTTAGTCTAGCCACGTACTTGAAGGATGGTTATAAGCATATCCATATATGGCATGGT 1919
Query 1927 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 TCAGAACACCATCAGTTCAAGCAGAAGGTAGGAATCGAATTCTCTGAAGATGAAGAAGGT 1979
Query 1987 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 GTCCAACACAGAACCAGCTCCGAAACATCATCACACCCTCCAGGAACCATTGTGGCCCCC 2039
Query 2047 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTCGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2106
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2040 ATGGCTGGTTTGGTAGTCAAGGTCCTTGTTGAAAACGAAGCCAAAGTAGATCAAGGTCAA 2099
Query 2107 CCTATATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2166
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 CCTGTATTAGTCCTAGAGGCAATGAAGATGGAGCACGTTGTGAAAGCACCATCCTCTGGA 2159
Query 2167 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 AGCATACAGGACCTCAAAGTTAAAGCAGGCCAACAGGTTTCAGATGGCAGTGCTCTATTC 2219
Query 2227 AGGATCAAAGGGTAAATAACACGATTTGCGATTGATCAA-CC-ATTCGCTGGCTTACGCG 2284
|| |||||||| ||||||||||||||||||||||||||| || || | ||||||||| ||
Sbjct 2220 AGAATCAAAGGATAAATAACACGATTTGCGATTGATCAAACCCATGCTCTGGCTTACCCG 2279
Query 2285 AAACCTGAACTAATAAGCATTTGGGTGTGTATATAAACCGAAATCTTACAAAAGATAAAT 2344
|||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2280 AAACCTCAACTAATACGCATTTGGGTGTGTATATAAACAGAAATCTTACAAAAGATAAAT 2339
Query 2345 AAATCCAAAGCTTTATAAATGTTTTTACTGCCTCTATATAGATCT 2389
|||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 2340 AAATCCAAAGCTTTATCAATGTTTGTGCTGCCTCTATATAGATCT 2384
Score = 294 bits (159), Expect = 2e-78
Identities = 169/174 (97%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 2433 TGATTACATTAATAATCAAGATAGTCCGAGCCATTTCTTGAATACTAAACCAGCTTCTCT 2492
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 2387 TGATTACATTAATAATCAAGTTAGTCCGAGCCATTTCTTGAATACTAAACCCGCTTCTCT 2446
Query 2493 CTTCTTGAGCTGAGACTCGCTCTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2552
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2447 CTTCTTGAGCTGAGACTCACTTTGAACTTTTGGAGCTTTGCCTTTATAAGCAGTCTTGTG 2506
Query 2553 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATAtttttttt 2606
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2507 ATACTTCAAGAAGAGCATCCGATACTTGTACTTATCAACAAACATATTCTTTTT 2560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98272832100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5