BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03103.1

Length=640
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311412 jgi|Araly1|311412|fgenesh1_pm.C_scaffold_1000192           558    1e-158


> Ahg311412 jgi|Araly1|311412|fgenesh1_pm.C_scaffold_1000192
Length=489

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 365/394 (93%), Gaps = 10/394 (3%)
 Strand=Plus/Plus

Query  23   ATGATTCTTGCAATATTAGCCCTTGTAATAGCCACCTTTCTATACGGTGGAGCCACCACG  82
            |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    ATGATTCTTGCAATGTTAGCCCTTGTAATAGCCACCGTTCTATACGGTGGAGCCACCACG  60

Query  83   GTCCAAGCTGGATGCAGA-GACACTCTGACCAGCCTTTCCCCTTGTCTTTATTACCTCAA  141
            |||||||| ||||| | | ||| |||||||||||||||||||||| ||  ||||||||||
Sbjct  61   GTCCAAGCCGGATGTA-ATGACGCTCTGACCAGCCTTTCCCCTTGCCTCAATTACCTCAA  119

Query  142  CGGTGGCTCATCGTCACCTTCTTGGAGTTGTTGTCGTCAATTTTCCACGGTGGTTCAATC  201
            |||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct  120  CGGTGGCTCAACGTCACCTTCTTCGAATTGTTGTAGTCAATTTTCCACGGTGGTTCAATC  179

Query  202  TTCACCGGAATGTTTGTGCTCA-GTGGTTAATAGCAACGAAAGCTCATTTT-ATGGGTTC  259
            |||||||||||||||||||| | |||||||||||||| ||||||||||||| | ||||||
Sbjct  180  TTCACCGGAATGTTTGTGCT-ATGTGGTTAATAGCAATGAAAGCTCATTTTCA-GGGTTC  237

Query  260  AAATTTAACCGGACTTTGGCTCTCAATCTCCCTACCGCTTGCAATGTTCAAACTCCATCA  319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  AAATTTAACCGGACTTTGGCTCTCAATCTCCCTACCGCTTGCAATGTTCAAACTCCATCA  297

Query  320  CCTAGCCTGTGTAACACCGGTGGTAAC-GTACCAACCACGT-TGCCGGCGAATACTCCTG  377
            ||||||| ||||||||| ||  ||||| | ||||| ||||| | ||||||||||||||||
Sbjct  298  CCTAGCCAGTGTAACACAGGAAGTAACAG-ACCAAGCACGTCT-CCGGCGAATACTCCTG  355

Query  378  TAGGTTCACCTCGAAGTGCTCCTTCACCGTCAGG  411
            |||||||||||| |||||||||||||||||||||
Sbjct  356  TAGGTTCACCTCAAAGTGCTCCTTCACCGTCAGG  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23445593955


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5