BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03110.1
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918976 jgi|Araly1|918976|scaffold_100257.1 2137 0.0
> Ahg918976 jgi|Araly1|918976|scaffold_100257.1
Length=1322
Score = 2137 bits (1157), Expect = 0.0
Identities = 1256/1304 (96%), Gaps = 5/1304 (0%)
Strand=Plus/Plus
Query 110 aacaaTGCAGGAAGAATCTCACATCGAAGAAGTTGAAATCCAAAACAAACTCGAAGTTGC 169
||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 18 AACAATGGAGGAAGAATCTCACACCGAAGAAGTAGAAATCCAAAACAAACTCGAAGTTGC 77
Query 170 TCCTGCATTGATTTCCGTTCATCCATCTCAGAAATCTGTCGCTGTCGCTGTCGGCTCGGA 229
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 78 TCCTGCATTGATTTCCGTTCATCCATCTCAGAAATCTCTCGCTGTCGCTGTCGGTTCGGA 137
Query 230 TCTTCGTATTTTCGATCTTATAGAGAATTGCCCAGTTAGTTTGGTGGATGAATCTGATGG 289
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 138 TCTTCGTGTATTCGATCTTATAGAGAATCGCCCAGTTAGTTTGGTGGATGAATCTGATGG 197
Query 290 GCCTAT-CCGTAAGGAATCCATTAGAGCTATTCGGTACAGTACAAGTGGCAAGCTCTTTG 348
|||| | |||||||||||||||||| |||||||| |||||| ||||||| ||||||||||
Sbjct 198 GCCT-TCCCGTAAGGAATCCATTAGGGCTATTCGTTACAGTGCAAGTGGAAAGCTCTTTG 256
Query 349 TGTCCGCAGGCGATGACAAGCTTGTCAAGATTTGGTCCGCAGATTCTTGGCGCTGTCTTA 408
||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct 257 TGTCCGCAGGCGATGACAAACTAGTTAAGATTTGGTCTGCAGATTCTTGGCGCTGTCTTA 316
Query 409 ACACAGTATGTTCTGAGAAAAGAGTTAGCGCAGTTGCTATAAGTAGTGATGACTCACATG 468
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 317 ACACAGTATGTTCTGAGAAGAGAGTTAGCGCAGTTGCTATAAGTAGCGATGATTCACATG 376
Query 469 TTTGCTATGCGGACAAGTTTGGTGTTGTATGGGTGATTGAGCTGGATGGGATCAATGACG 528
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 377 TTTGCTATGCGGACAAGTTTGGTGTTGTATGGGTGATCGAGCTGGATGGGATCAATGAGG 436
Query 529 GTAAAACTTTACCTAGTAAGAAGGGTGCGCTGCTGCTTTCCCATTATTGTAGTATTATTA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 GTAAAACTTTACCTAGTAAGAAGGGTGCGCTGCTGCTTTCCCATTATTGTAGTATTATTA 496
Query 589 CTAGCCTGGAGTTTTCCCCAGATGGTAGATATATTCTTAGTGCAGACCGGGACTTTAAGA 648
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 497 CTAGCCTGGAGTTTTCCCCAGATGGTAGATATATTCTTAGTGCTGATCGGGACTTTAAGA 556
Query 649 TAAGGGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TAAGGGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTT 616
Query 709 GTCTTGGACATTCAGAGTTCATTACCTGCACAGCATTTGTCAGCACTCCAGAGCTTACTC 768
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 617 GTCTTGGACATTCAGAGTTCATCACCTGCACAGCATTTGTCAGCACTCCAGAGCTTACTC 676
Query 769 AGGGATACCTCATGTCTGGAAGTGGAGATTCAACTGTTCGACTGTGGGACATTACATCTG 828
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 677 AGGGATACCTCATGTCTGGAAGTGGAGATTCAACTGTTCGACTGTGGGATATTACATCTG 736
Query 829 GGTCTCTTCTCGACACATGTGAAGTTAGTACAGTGGCAGGACATGCAGAGTCTAATGAAA 888
|||||||||| |||||||||||||| |||||||||||||| ||| ||||| ||||||||
Sbjct 737 GGTCTCTTCTTGACACATGTGAAGTCAGTACAGTGGCAGGGCATTTAGAGTTTAATGAAA 796
Query 889 ATGAGTCGCCGACCCAAGTCACAGTTACTGACATATGCGCTATCCCGAATTCGTCTCTTG 948
|||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 797 GTGAGTCGCTGACCCAAGTCACAGTTACCGACATATGCGCTATCCCGAATTCTTCTCTTG 856
Query 949 CAGCAGTGGCAATTCAAAGCTTTCAAGGAATATTCTTGTTAAGCTGTGATTTGACAGCAC 1008
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 857 CAGCAGTGGCAATTCAAAGCTTTCAAGGAATACTCTTGTTAAGCTGTGATTTGACAGCAC 916
Query 1009 ATACTCTCTCTATCACAAAGGTGATAAAAATCCCTGGAGAAAGTTTCATTCCTACAAGTA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 ATACTCTCTCTATCACAAAGGTGATAAAAATCCCTGGAGAAAGTTTCATTCCTACAAGTA 976
Query 1069 TAGCTGTAAGTGCATCTTCAAGATTACTATGGATGGTATCAGGAGCCTCAAACCTGCCTG 1128
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 977 TAGCTGTAAGTGCATCTTCAAAATTACTATGGATGGTATCAGGAGCCTCAAACCTGCCTG 1036
Query 1129 GTTCGAACCATCCTGGTTTTTCAAGGGTTCGGGTCATCTCTTGCCTTGAGACCGAATCAT 1188
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 1037 GTTCGAACCATCCTGGTTTTTCAAGGGTTCGGGTCATCTCGTGCCTTGAGACCG-A--AT 1093
Query 1189 CTTCAATACTTGAAGACGAGCAGATTCCAGGAGGGACCAAACTATTGGAGCAATTACAAG 1248
||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1094 CTTCAATCCTTGAAGACGGGCAGATTCCAGGAGGGACCAAACTGTTGGAGCAATTACAAG 1153
Query 1249 GTAAAGTTACAATAGAAGAGAGTGTAATGAGTGCTGCGGCAGAAGCTGTGAGAGCGGCAA 1308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GTAAAGTTCCAATAGAAGAGAGTGTAATGAGTGCTGCGGCAGAAGCTGTGAGAGCGGCAA 1213
Query 1309 TGTCCAGCCTTTTGATGAAGAAGCAATACTCTGAAGAGAAGAGAGAGTTCAGAAAAAGAA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGTCCAGCCTTTTGATGAAGAAGCAATACTCTGAAGAGAAGAGAGAGTTCAGAAAAAGAA 1273
Query 1369 CCAGAAATGATAAGAAAACCACACGATGATTGCATTTTGCCAAA 1412
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1274 CCAGAAATGATAAGAAAACCACACAATGATTGCATTTTGCCAAA 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58582796810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5