BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G03120.1

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg909976 jgi|Araly1|909976|Al_scaffold_0001_230                     440    5e-123


> Ahg909976 jgi|Araly1|909976|Al_scaffold_0001_230
Length=507

 Score =  440 bits (238),  Expect = 5e-123
 Identities = 289/313 (92%), Gaps = 5/313 (2%)
 Strand=Plus/Plus

Query  1    ATGGCACAGCATCAGCATTCTCCTCAAAGGCCAAGAGATCAGGACAACACACGGCCACAT  60
            ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||
Sbjct  1    ATGGCACAGCATCAGCATTCTCCTCAAAGGCTAAGAGATCAGGAAAACACACGGCCGCAT  60

Query  61   GATCAATACGGC-ATCGTTTTCAGCGTCTCC-G-G-TGATGACGTGGCAAGAAAGCAAGG  116
            || | ||||||| | |||||||||||||||| | | ||||||||||||||||||||||||
Sbjct  61   GAACTATACGGCGA-CGTTTTCAGCGTCTCCGGTGATGATGACGTGGCAAGAAAGCAAGG  119

Query  117  CGATAGTTTCTCTCAACCTGACCCAACGGTTGCGACGATGGGATCCGTAGACACGGTTAC  176
            || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct  120  CGTTAGTTTCTCTCAACCTGATCCAACGGTTGCGACGATGGGATCCGCAGACACGGTTAC  179

Query  177  GATTGGGGAGGCTTTGGAGGCTACAGCTTTGTCTCTTGGAGATAAGCCTGTCGACCGTAG  236
            |||||| ||||||||||||||||| ||||| |||||||||||||||||||| || | || 
Sbjct  180  GATTGGAGAGGCTTTGGAGGCTACGGCTTTATCTCTTGGAGATAAGCCTGTGGATCATAA  239

Query  237  AGACGCAGCTGCGATTCAAGCCGCCGAAACTAGAGCCACCGGTGAGTCTAAGGGTCGACC  296
            |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  240  AGACGCAGCTGCCATTCAAGCCGCCGAAACTAGAGCCACCGGTGAGTCTATGGCTCGACC  299

Query  297  CGGTGGTCTTGCA  309
             ||||||||||||
Sbjct  300  TGGTGGTCTTGCA  312


 Score =  244 bits (132),  Expect = 4e-64
 Identities = 150/159 (94%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  391  GATGCGGCGGAGAGGCTTCCCGGAGACAAGGTGGTGACAAGTGAAGATGCGGAGGCAGTG  450
            ||||| ||||||| |||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct  349  GATGCTGCGGAGAAGCTTCCAGGAGACAAGGTGGTGACAAGTGAAGATGCCGAGGCGGTG  408

Query  451  GTTGGAGCGGAACTTAGAAGCAGTTCAGAGATGAAGACAACTCCTGGTGGTGTCGCAGAT  510
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  409  GTTGGAGCGGAACTTAGAAGCAGTTCTGAGATGAAGACAACTCCTGGTGGTGTGGCAGAT  468

Query  511  TCCATGTCGGCAGGGGCAAGGCTCAATCAACAACTCTAG  549
            ||||||||||| ||||||||||||||||| |||||||||
Sbjct  469  TCCATGTCGGCGGGGGCAAGGCTCAATCAGCAACTCTAG  507



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20031684225


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5