BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03130.1
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918978 jgi|Araly1|918978|scaffold_100259.1 1109 0.0
> Ahg918978 jgi|Araly1|918978|scaffold_100259.1
Length=661
Score = 1109 bits (600), Expect = 0.0
Identities = 635/651 (98%), Gaps = 5/651 (1%)
Strand=Plus/Plus
Query 43 AAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGCCATAACAACCA 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AAACAGAAGAAACTATGGCAACTCAAGCCGCCGGAATCTTCAGCCCCGCCATAACAACCA 69
Query 103 CTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCATCAAGCCACCGTCCCAAGTCTCTCT 162
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 70 CTACTTCCGCCGTCAAGAAACTCCACCTCTTCTCAACAAGCCACCGTCCCAAGTCTCTCT 129
Query 163 CCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCTCCTCTGCTGCCCCAGCCG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 CCTTCACCAAAACCGCCATCCGCGCCGAGAAAACAGAGTCCTCCTCTGCTGCCCCAGCCG 189
Query 223 TG--A-AAGAAGCTCCAGTTGGATTCACTCCCCCGCAGCTAGACCCAAACACACCATCAC 279
|| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TGAAAGAAGAAGCTCCGGTTGGATTCACTCCCCCGCAGCTAGACCCAAACACACCATCAC 249
Query 280 CAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGCACAAGTAGAGGAATTTTACG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CAATCTTCGCCGGAAGCACAGGAGGTCTCCTCCGTAAAGCACAAGTAGAGGAATTTTACG 309
Query 340 TGATCACATGGAACTCACCGAAAGAACAAATCTTTGAGATGCCAACAGGAGGAGCTGCGA 399
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 310 TCATCACATGGAACTCACCGAAGGAACAAATCTTTGAGATGCCAACAGGAGGAGCTGCGA 369
Query 400 TAATGAGAGAAGGACCGAATCTATTGAAACTGGCGAGGAAAGAACAGTGTTTGGCTTTAG 459
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 370 TAATGAGAGAAGGACCGAATCTGTTGAAACTAGCGAGGAAAGAACAGTGCTTGGCTTTAG 429
Query 460 GTACGAGGTTGAGGTC-AAAGTACAAGATCACTTACCAGTTTTACAGAGTGTTCCCTAAC 518
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 430 GTACGAGGTTGAGGTCTAAA-TACAAGATCACTTACCAGTTTTACAGAGTGTTCCCTAAC 488
Query 519 GGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTATCCAGAGAAAGCGAATCCAGGA 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GGAGAGGTTCAATATCTTCACCCGAAAGATGGAGTTTATCCAGAGAAAGCGAATCCAGGA 548
Query 579 AGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAAAATGTTAGTCCCATTGAGGTT 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGAGAAGGTGTTGGACTAAACATGAGATCCATCGGTAAAAATGTTAGTCCCATTGAGGTT 608
Query 639 AAATTCACTGGGAAACAATCTTATGATTTGTAAGATTTTAATTCGTATTTT 689
||||||||||| |||||||||||||||||||||| ||| | ||||||||||
Sbjct 609 AAATTCACTGGAAAACAATCTTATGATTTGTAAGGTTTGATTTCGTATTTT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33052569039
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5