BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03150.1
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918980 jgi|Araly1|918980|scaffold_100261.1 935 0.0
> Ahg918980 jgi|Araly1|918980|scaffold_100261.1
Length=565
Score = 935 bits (506), Expect = 0.0
Identities = 531/543 (98%), Gaps = 1/543 (0%)
Strand=Plus/Plus
Query 40 AAGAAGAGATGACGACGATACGTAGATTCAGCTGCAATGACCTTCTCCGATTCACTTCCG 99
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 13 AAGAAGAGATGACGACGATACGTAGATTCAGCTGCAACGACCTTCTCCGATTCACTTCCG 72
Query 100 TGAATCTGGACCACCTCACTGAAACATTCAATATGTCCTTCTACATGACCTATTTAGCGA 159
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 73 TGAATCTGGACCACCTCACTGAAACATTCAATATGTCTTTCTACATGACCTATTTAGCGA 132
Query 160 GATGGCCTGACTATTTTCATGTTGCTGAAGGTCCCGGCAATCGTGTCATGGGTTATATTA 219
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 133 GATGGCCTGACTATTTTCATGTAGCTGAAGGTCCCGGCAATCGTGTCATGGGTTATATTA 192
Query 220 TGGGTAAAGTTGAAGGACAGGGTGAATCTTGGCATGGTCATGTGACAGCCGTCACTGTCT 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TGGGTAAAGTTGAAGGACAGGGTGAATCTTGGCATGGTCATGTGACAGCCGTCACTGTCT 252
Query 280 CTCCAGAATACCGCAGGCAGCAACTTGCAAAGAAACTGATGAACCTTCTGGAAGATATAA 339
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 253 CTCCAGAATATCGCAGGCAGCAACTCGCAAAGAAACTGATGAACCTTCTGGAAGATATCA 312
Query 340 GTGATAAGATTGATAAAGCCTACTTTGTGGATCTTTTTGTAAGAGCTTCCAACACACCAG 399
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GTGACAAGATTGATAAAGCCTACTTTGTGGATCTTTTTGTAAGAGCTTCCAACACACCAG 372
Query 400 CCATCAAGATGTATGAAAAGCTTGGATACATAATTTATAGGCGGGTTTTACGCTATTATT 459
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 373 CCATCAAGATGTATGAAAAGCTTGGCTACATAATCTATAGGCGGGTTTTACGCTATTATT 432
Query 460 CAGGAGAGGAAGATGGATTAGATATGAGGAAGGCATTATCAAGAGATGTAGAGAAAAAGT 519
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CAGGGGAGGAAGATGGATTAGATATGAGGAAGGCATTATCAAGAGATGTAGAGAAAAAGT 492
Query 520 CTGTGATTCCTCTCAAGAGACCTATCACACCTGATGAATTAGAGTATGATTAAGACCCTA 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 493 CTGTGATTCCTCTCAAGAGACCTATCACACCTGATGAATTAGAGTATGATTAAGACAC-A 551
Query 580 ACT 582
|||
Sbjct 552 ACT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27372254406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5