BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03160.1
Length=2878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470295 jgi|Araly1|470295|fgenesh2_kg.1__249__AT1G03160.1 3312 0.0
> Ahg470295 jgi|Araly1|470295|fgenesh2_kg.1__249__AT1G03160.1
Length=2897
Score = 3312 bits (1793), Expect = 0.0
Identities = 1911/1970 (97%), Gaps = 0/1970 (0%)
Strand=Plus/Plus
Query 909 TGAACTGCCGGAGAAAAAGAATTCTGCTGGCTTCATAAAATTAGAGGACAAACAGAAACT 968
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 928 TGACCTGCCGGAGAAAAACAATTCTGCTGGGTTCATAAAATTAGAGGACAAACAGAAACT 987
Query 969 AATAGTAGAAATGGAGAAATCTGTGTTGAGAGAGACGATTGAAATCATCCACAAGGCGGC 1028
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 988 AATAATAGAAATGGAGAAATCAGTGTTGAGAGAGACGATTGAAATCATCCAGAAGGCGGC 1047
Query 1029 TCCACTGATGGAGGAAGTCTCCCTTCTAATTGATGCTGTTTCTCGGATCGATGAGCCGTT 1088
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1048 TCCACTGATGGAGGAGGTCTCCCTTCTAATTGATGCTGTTTCTCGGATTGATGAGCCGTT 1107
Query 1089 TCTGATGGTTATAGTGGGGGAATTTAACTCTGGAAAATCAACGGTTATCAATGCACTTCT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TCTGATGGTTATAGTGGGGGAATTTAACTCTGGAAAATCAACGGTTATCAATGCACTTCT 1167
Query 1149 TGGGAAGAGATACCTGAAAGAAGGGGTAGTCCCCACTACCAATGAAATCACGTTTCTGTG 1208
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1168 TGGGAAGAGATACCTGAAAGAGGGGGTAGTCCCCACTACCAATGAAATCACTTTTCTGTG 1227
Query 1209 CTACTCTGACTTGGAATCCGAAGAGCAACAACGTTGCCAAACACATCCAGATGGCCAATA 1268
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1228 CTACTCTGACTTGGAATCCGAAGAGCAACAACGATGCCAAACGCATCCAGATGGCCAATA 1287
Query 1269 TGTATGCTATCTTCCTGCACCAATACTTAAGGATATAAATATTGTTGACACACCTGGGAC 1328
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1288 TGTATGCTATCTTCCTGCACCAATACTTAAGGATATTAATATTGTTGACACACCTGGGAC 1347
Query 1329 CAATGTGATCCTTCAAAGGCAACAGCGTCTTACAGAAGAATTTGTTCCACGTGCAGATTT 1388
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1348 CAATGTGATCCTTCAAAGGCAACAACGTCTTACAGAAGAATTTGTTCCACGTGCAGATTT 1407
Query 1389 GCTTGTTTTTGTTCTTTCTGCTGACCGCCCTTTAACTGAAAGTGAGGTTGCGTTTCTCCG 1448
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 GCTTGTTTTCGTTCTTTCTGCTGACCGCCCTTTAACTGAAAGTGAGGTTGCGTTTCTCCG 1467
Query 1449 GTACACACAGCAGTGGAAAAAGAAATTTGTGTTTATTCTGAATAAATCTGATATCTATCG 1508
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1468 GTACACACAGCAGTGGAAGAAGAAATTTGTGTTTATTCTGAATAAATCTGATATCTACCG 1527
Query 1509 TGATGCTCGTGAGCTTGAGGAAGCTATTTCATTTGTTAAAGAGAATACACGGAAGTTGCT 1568
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1528 TGATGCCCGTGAGCTTGAGGAAGCGATTTCATTTGTTAAAGAGAATACACGGAAGTTGCT 1587
Query 1569 TAATACAGAAAATGTGATATTGTATCCGGTGTCCGCACGGTCTGCTCTTGAGGCGAAGCT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 TAATACAGAAAATGTGATATTGTATCCGGTGTCCGCACGGTCTGCTCTTGAGGCGAAGCT 1647
Query 1629 TTCAACAGCTTCTTTGGTTGGCAGAGATGATCTTGAGATCGCAGATCCTGGTTCTAATTG 1688
|||||||||||| || ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1648 TTCAACAGCTTCGTTAGTTGGCAGAGATGATCTTGAGGTCTCAGATCCTGGTTCTAATTG 1707
Query 1689 GAGAGTCCAGAGCTTCAATGAACTTGAGAAATTTCTTTATAGCTTCTTGGATAGCTCAAC 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 GAGAGTCCAGAGCTTCAATGAACTTGAGAAATTTCTTTATAGCTTCTTGGATAGCTCAAC 1767
Query 1749 AGCTACCGGGATGGAGAGAATAAGGCTTAAATTGGAGACACCCATGGCGATTGCTGAGCG 1808
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 TGCTACTGGGATGGAGAGAATAAGGCTTAAATTGGAGACACCCATGGCGATTGCTGAGCG 1827
Query 1809 TCTCCTTTCTTCTGTGGAAGCTCTTGTGAGACAAGATTGCCTAGCTGCTAGGGAAGACTT 1868
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TCTCCTTGCTTCTGTGGAATCTCTTGTGAGACAAGATTGCCTAGCTGCTAGGGAAGACTT 1887
Query 1869 GGCTTCAGCAGACAAGATTATCAGTCGAACTAAAGAATACGCGCTTAAGATGGAATATGA 1928
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1888 GGCTTCAGCAGACAAGATTATCAATCGAACTAAAGAATACGCGCTTAAGATGGAATATGA 1947
Query 1929 GAGCATTTCTTGGAGAAGGCAGGCTCTCTCGTTGATTGATAATGCCAGATTACAAGTTGT 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 GAGCATTTCTTGGAGAAGGCAGGCTCTCTCGTTGATTGATAATGCCAGATTACAAGTTGT 2007
Query 1989 TGATCTGATAGGAACTACCCTGCGACTATCAAGCCTTGATCTTGCGATCTCGTACGTGTT 2048
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2008 TGATCTAATAGGAACTACCCTGCGACTATCAAGCCTTGATCTTGCGGTCTCTTACGTGTT 2067
Query 2049 CAAAGGGGAAAAATCGGCCTCAGTAGCAGCTACATCCAAAGTTCAAGGTGAAATACTCGC 2108
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 CAAAGGGGAAAACTCGGCCTCAGTAGCAGCTACATCCAAAGTTCAAGGTGAAATACTCGC 2127
Query 2109 TCCAGCACTCACAAATGCGAAAGAATTGCTTGGAAAATATGCTGAATGGCTACAATCAAA 2168
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2128 TCCAGCACTCACAAATGCTAAAGAGTTGCTTGGAAAATATGCTGAATGGCTACAATCAAA 2187
Query 2169 TACTGCCCGTGAAGGGAGTCTGTCTCTGAAATCATTCGAAAACAAATGGCCAACATATGT 2228
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2188 TACTGCCCGTGAAGGGAGTCTGTCCCTGAAATCATTCGAAAACAAATGGCCAACATATGT 2247
Query 2229 CAATTCAAAAACGCAATTGGGCATAGACACATATGACTTACTTCAGAAAACTGATAAAGT 2288
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 2248 CAATTCAAAAACTCAATTGGGCATAGACACATATGACTTACTTCGGAAAACTGATAAATT 2307
Query 2289 CAGCTTGAAAACAATACAGAACTTGAGTGCCGGAACCACATCAAAACGATTGGAACAAGA 2348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 CAGCTTGAAAACAATACAGAACTTGAGTGCCGGAACCACATCAAAACGATTGGAACAAGA 2367
Query 2349 TATTCGAGAAGTGTTCTTTGTGACAGTTGGTGGGCTTGGAGCTGCAGGACTGTCTGCATC 2408
|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2368 TATTCGAGAAGTGTTCGTTGTGACAGTTGGTGGGCTTGGAGCTGCGGGACTATCTGCATC 2427
Query 2409 ACTTCTAACCTCAGTGCTACCGACCACACTGGAAGATCTTCTTGCTCTTGGCCTTTGCTC 2468
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2428 ACTTCTAACCTCAGTGCTACCCACCACATTGGAAGATCTTCTTGCTCTTGGCCTTTGCTC 2487
Query 2469 CGCTGGAGGGTATGTGGCTATAGCAAACTTCCCATATCGAAGACAGGCTATAATTGGTAA 2528
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 2488 CGCTGGAGGGTATGTGGCTATAGCAAACTTCCCATATCGAAGACAATCTATAATTGGCAA 2547
Query 2529 GGTGAATAAAGTGGCTGATGCGTTGGCTCAACAGCTCGAAGACGCTATGCAAAAAGATCT 2588
||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 2548 GGTGAATAAAGTGGCTGATGCGTTGGCTCAACAACTCGAAGATTCTATGCGAAAAGATCT 2607
Query 2589 TTCAGATGCGACGAGTAATCTAGTTAACTTTGTGAATATTGTTGCCAAGCCTTATCGAGA 2648
|||||||||||| | ||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 2608 TTCAGATGCGACTAATAATCTAGTAAATTTTGTGAATATCGTTGCCAAGCCTTATCGAGA 2667
Query 2649 AGAAGCTCAGCTAAGACTTGATCGTCTTTTAGGAATCCAGAAAGAATTATCAGATATTAG 2708
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2668 AGAAGCTCAGCTAAGACTTGATCGTCTTTTAGGAATCCAGAAAGAACTATCAGATATTAG 2727
Query 2709 AAGTAAATTACAGTTGCTACAAGTTGATATTGATAACCTTCATGTATCACGAGACGAGAT 2768
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2728 AAGTAAATTACAGTTGCTACAAGTTGATATTGATAACCTTCATGTATCACGAGATGAGAT 2787
Query 2769 GAGACTTTAGCTATTCCAACACAATGTCGGGTTTTCCCTTCTTGACATTGTTCAGTGGGG 2828
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2788 GAGACTTTAGCTGTTCCAACACAATGTCGGGTTTTCCCTTCTTGACATTGTTCAGTGGGG 2847
Query 2829 GGCAAGTGTATGTACTTTGTCATAATGAATAATACCTGCCAGTTCCGACT 2878
|||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2848 GGCAAGTGTATGTACTTTGTCATAATGAATAAGACCTGCCAGTTCCGACT 2897
Score = 1266 bits (685), Expect = 0.0
Identities = 835/905 (92%), Gaps = 20/905 (2%)
Strand=Plus/Plus
Query 15 tctcactctctctctttctctctccatgagaactctaatctctcACCGGCAATGTGTGAC 74
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTCTCTCTCTCCATGAGAACTCTAATCTCTCACCGGCAATGTGTGAC 60
Query 75 GTCACCGTTTCTTATCTCCGCCGCATCTCCACCGTTTCCTGGCCGGTGCTTTAAGTTATC 134
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GTCACCGTTTCTTATCTCCGCCGCATCTCCACCGTTTCCTGGCCGGTGCTTTCAGTTATC 120
Query 135 CTCCTTTACTCCTCCACGTCATAGGCGTTTTTCTTCTCTCTCGATCAGAAACATTTCGCA 194
||||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 121 ATCCTTTACTGCTCCACGTCATAGGCGTCTTCCTTCTCTCTCGATCAGAAACGTTTCGCA 180
Query 195 TGAATCCGCCGATCAGACTTCTTCTTCTAGGCCGCGAACTCTTTATCCTGGTGGTTACAA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGAATCCGCCGATCAGACTTCTTCTTCTAGGCCGCGAACTCTTTATCCTGGTGGTTACAA 240
Query 255 GCGTCCCGAACTCGCCGTTCCCGGTTTACTTCTCCGGCTAGACGCCGACGAGGTTATGAG 314
||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 241 GCGTCCCGAACTCGCCGTTCCCGGTCTACTTCTCCGGCTAGACGCGGATGAGGTTATGAG 300
Query 315 CGGGAATCGTGAAGAGACTCTTGATTTGGTCGACCGTGCTTTAGCTAAATCGGTTCAAAT 374
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGAAATCGTGAAGAGACTGTCGATTTGGTCGACCGTGCTTTAGCTAAATCGGTTCAAAT 360
Query 375 CGTCGTGATTGATGGCGGAGCCACCGCTGGTAAGCTCTACGAGGCGGCTTGTTTGCTGAA 434
||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 361 CGTCGTGATTGATGGCGGAGCTACCGCTGGTAAGCTCTATGAGGTGGCTTGTTTGCTGAA 420
Query 435 ATCACTTGTCAAAGGCCGTGCTTACCTCTTGATCGCTGAACGTGTTGATATCGCCTCCGC 494
|||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 421 ATCACTTGTCAAGGGTCGTGCTTACCTCTTGATCGCCGAACGCGTTGATATCGCCTCCGC 480
Query 495 CGTTGGTGCTAGTGGTGTTGCTCTCTCCGACGAAGGTCTTCCGGCGATTGTGGCGAGAAA 554
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 CGTTGATGCTAGTGGTGTTGCTCTCTCCGACGAAGGTCTTCCGGCGATAGTGGCGAGAAA 540
Query 555 CACATTGATGGGATCCAACCCCGACTCGGTACTTCTTCCACTGGTAGCTCGGATTGTGAA 614
|||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||
Sbjct 541 CACATTGATGGGATCCAATCCCGACTCGGTAGTTCTTCCATTGGTAGCTAGGATTGTGAA 600
Query 615 GGATGTTGATTCTGCTCTAATTGCCTCAAGCTCCGAGGGTGCTGATTTCCTTATACTTGG 674
|||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 601 GGATGTTGATTCTGCTCTAAGTGCCTCTAGCTCTGAGGGTGCTGATTTCCTTATACTTGG 660
Query 675 ATCTGGTGAAGA-AGATACGCAAGTG----G-CGGATTCTTTGTTGAAGAGCGTGAAAAT 728
| ||||||||| | | | | || | | ||||||||||||||||||||||||||
Sbjct 661 AAGTGGTGAAGATAAACAAGTGGGTTTATTGTCAGATTCTTTGTTGAAGAGCGTGAAAAT 720
Query 729 ACCGATATATGTGACTTGCAG-AGGCAATGAAGAAGCTAAAGAAGAATTGCAGTTACTGA 787
||||| | ||| |||||||| || ||| |||| | || ||| |||||||||||||
Sbjct 721 TCCGATTTTTGTTACTTGCAGCAG-CAA--AAGA-G--AA-GAA---TTGCAGTTACTGA 770
Query 788 AATCAGGTGTTTCTGGTTTTGTTATTTCGTTGAAAGATTTGCGTTCTTCTAGGGATGTAG 847
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 771 AATCAGGTGCTTCTGGTTTTGTTATTTCGTTGAAAGATCTGCGTTCTTCTAGGGATGTAG 830
Query 848 CTCTTCGCCAGAGTCTTGATGGAGCTTATGTTGTAAATAATCATGAGACACAAAATATGA 907
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 831 CTCTTCGCCAGTGTCTTGATGGAGCTTATGTTGTAAAT---CATGAAACACAAAATAAGA 887
Query 908 ATGAA 912
|||||
Sbjct 888 ATGAA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108633378740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5