BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03170.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918982 jgi|Araly1|918982|scaffold_100263.1 1096 0.0
> Ahg918982 jgi|Araly1|918982|scaffold_100263.1
Length=784
Score = 1096 bits (593), Expect = 0.0
Identities = 727/788 (92%), Gaps = 23/788 (3%)
Strand=Plus/Plus
Query 154 TTTCTAAAGAACATAGAAAAATGTCACTTGTTGTTTGTCAACCTCAA-ATAA-A------ 205
||||| ||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 1 TTTCTGAAGAACATATAAAAATGTCACTTGTTGTTTGTCAACCTCAAGATAACATCGTTC 60
Query 206 CG-AG------AGTTTCTATCAAAAAGATGACATGGGTGGGTTGAGTTTCCTACAATCTA 258
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CGAAGAATCAAAGTTTCTATCAAAAAGATGACATGGGTGGGTTGAGTTTCCTGCAATCTA 120
Query 259 TGTCCGATATCACTTCCATTGCCCAAACCAAAGAGGATAAAGCTTATGTTCACCCGATGG 318
||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTCCGACATCACTGCCATTGTCCAAACCAAAGAGGATAAAGCTTATGTTCACCCGATGG 180
Query 319 AGAAACGCTCTGTTTCTAAACTGAACGAGAAAAGCTTGGAGATGTGCACTGAGAGTCTCG 378
||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||
Sbjct 181 AGAAACGCTCTGTTTCTAAGCTCAATGAGAAAAGCTTAGAGATGTGCACTGAGAGTCTCG 240
Query 379 GAACCGAAACAGGAAGCGAGAGTGGTGACGAGTTGTCATTGCTTGCGTTTGAAGCAACCA 438
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 241 GAACCGAAACAGGAAGCGAGAGTGGTGACGAGTTATCATTGCTTGCGTTTGAAGCAGCCA 300
Query 439 CTACTCCTAGGGCTCCTCCTCGTCAACTGAAACCTCAAGAAGATACTAACTTGCCGGACA 498
|||||||||||| | ||||| ||| |||||||| | |||||||||||||||| ||||||
Sbjct 301 CTACTCCTAGGG-T--TCCTCTTCAGCTGAAACCACGAGAAGATACTAACTTGACGGACA 357
Query 499 AGACACCGCCGATGAG-TCGCAACAACAGTTTCCCACCGCCGATAAAGTTCGTTGAAGAC 557
||| | |||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 358 AGAAATCGCCGATG-GTTCGCAACAACAGTTTCCCGCCGCCGATAAAGTTCGTTGAAGAC 416
Query 558 TCAAAGTATAATCGTATGGTGAGATGGTTAGGAGAAGATGGTCGAATTGTAGTTCAAGCA 617
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 TCAAAGTATAATCGTATGGTGAGATGGTTAGGAGAAGATGGTCGACTTGTAGTTCAAGCA 476
Query 618 ATTAGGGTTTCGTCTCCGCCTAGTTGCTTTGTATCAGAACGTGGTGAAGGAAGGCTTCGT 677
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 477 ATTAGGGCTTCGTCTCCGCCTAGTTGCTTTGTAGCTGAACGTGGTGAAGGAAGGCTTCGT 536
Query 678 CTCATTTTAACGTCGGAAAGTTCTCTTCTTAGTCACAATCACGAGGAGGAGGA--A-GAA 734
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| | |||
Sbjct 537 CTCATGTTAACGTCGGAAAGTTCTCTTCTTAGTCACAGTCATGAGGAGGAGGAGGAAGAA 596
Query 735 GAAGAAACAGAGGAGGGCATCGACGAGGAAACTAGTGAGAACTTGGAGGGTAAAAGTGGA 794
||||||||||||||||||||||| |||||||||||||| | | |||||||||||| ||||
Sbjct 597 GAAGAAACAGAGGAGGGCATCGATGAGGAAACTAGTGATATCATGGAGGGTAAAAATGGA 656
Query 795 AATAAAAAGTTTAGCAGATTCAGCAGAAGATGCAAGGAGAATGGTCGTGAGCCTAAACCA 854
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 AATAAAAAGTTTAGCAGATTAAGCAGAAGATGCAAGGAGAATGGTCGTGAGCCTAAACCA 716
Query 855 ATGCTCACTTGGAAGCAGCAGCAGTTTTGGGTCGCTACTTAAACTTAATTCGGCTAATTA 914
||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||
Sbjct 717 ATGCTTACTTGGAAGCAGCAGCACTTTTGGGTCGCTACTTCAACTTAATTCGACTAATTA 776
Query 915 ATGTGGGT 922
| ||||||
Sbjct 777 ACGTGGGT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5