BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03180.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470297 jgi|Araly1|470297|fgenesh2_kg.1__251__AT1G03180.1 1378 0.0
> Ahg470297 jgi|Araly1|470297|fgenesh2_kg.1__251__AT1G03180.1
Length=937
Score = 1378 bits (746), Expect = 0.0
Identities = 897/965 (93%), Gaps = 30/965 (3%)
Strand=Plus/Plus
Query 25 GATCTGTTTTTC-TCTTCTTCGTCTTCTCTCACCCGCCTACTGACtttttttCAAATTTC 83
|||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 GATCTG-TTTTCTTCTTCTTCGTCTTCTCTCACCCGCCTACTGGC-TTTTTTCAAATTTC 58
Query 84 TTCAGCAACACATACATACAGTCACAAGGTTTCCAATTTTCGATTCACGATGGAAATGGC 143
||||||||||||| | || | | || || | ||||||||||||
Sbjct 59 TTCAGCAACACAT---T----TC----G------A-TT---GA---A-GATGGAAATGGC 93
Query 144 GGAAGGGGAAGGAACTACAGAGGAGAACTACGACGTAGACATCGCGACCACCGCTTCTTC 203
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 94 GGAAGGGGAAGGAACTACGGAGGAGAACTACGACGTAGACATCGCGACCACCGCTTCTTC 153
Query 204 ATTAGGCGGCTCCGGCGTCTTCCATATCATCAATGACATAGTCGGATTCGTCCTCTATAT 263
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 154 ACTAGGCGGCTCCGGCGTCTTCCATATCATCAATGACATAGTCGGTTTCGTTCTCTATAT 213
Query 264 GCACCAGCAGATCCCTTCGGTATTACAAGACATGAGCCTTGAATTTGAAGGATTGCAAAC 323
||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 214 GCATCAGCAGATCCCTTCGGTAATACAAGACATGAGCCTTGAATTTGATGGATTGCAAAC 273
Query 324 TGAATTTATGGATTTGGAGACGAATCTTGCAGAACCTCAAGTGAAACCACTGGTTAGAAG 383
| ||||||||||||||||| |||||||| || |||| |||||||||||||||||||||||
Sbjct 274 TCAATTTATGGATTTGGAGGCGAATCTTACACAACCCCAAGTGAAACCACTGGTTAGAAG 333
Query 384 AAAACTGATGAGTAGAAAGAGAGAGGTGAAGAATGAGATTAAGAAACTGGAGAAACTGAT 443
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 334 AAAACTGGTGAGTAGAAAGAGAGAGGTGAAGAATGAAATTAAGAAACTGGAGAAACTGAT 393
Query 444 GAAAACCATCTCTAGTCTCCGAAGTGCGCTGCAGTTAATGATCCGTGAAGCTCCTGGCAT 503
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 394 GAAAACCATCACTAGTCTCCGAAGTGCGCTGCAGTTAATGATCCGTGAAGCTCCTGATAT 453
Query 504 TCAGAAAGTTGTGTTGATTCTTGGTGGTAGTCCATTACGGCCTCAAAATGCTTATGAGTT 563
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 454 TCAGAAAGTTGTGTTGATTCTTGGTGGTAGTCCATTACGGCCTCAAAAAGCTTACGAGTT 513
Query 564 GTTATTCACACAACGCAGAGAC-CATGTTCTAGGCTACGAAGGTGACTTTGCTAAATCCA 622
||||||||||| || ||| || | | |||| ||||||||||||||||||||||||||||
Sbjct 514 GTTATTCACACTACACAGTGATTC-TCTTCTGGGCTACGAAGGTGACTTTGCTAAATCCA 572
Query 623 AAGCTGCAGAAGCACTTTCAAAAAAGACTATCCGAGCACTGATCTCGACGGGTGCTGGAT 682
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 573 AAGCTGCAGAAGCACTTTCAAAAAAGACTATCCGAGCACTGATCTCGGCGGGTGCTGGAT 632
Query 683 CAACTTCCTACCCAGGTCCAATGAGGCTCTTCATATTGGTTCATGCTCCACCTACTTTGA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CAACTTCCTACCCAGGTCCAATGAGGCTCTTCATATTGGTTCATGCTCCACCTACTTTGA 692
Query 743 ATCTTCCACAACATTTCCTTCCTAAACGTGACTTCAGATACAACAGAAAGTTTGTGCCTT 802
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ATCTTCCCCAACATTTCCTTCCTAAACGTGACTTCAGATACAACAGAAAGTTTGTGCCTT 752
Query 803 CAAAGTTGAGATTCAAGTGCAGAACGCAAGACAATGCAACAAATTCTCCTCCCACAAATG 862
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 753 CAAAGTTGAGATTCAAGTGCAGAACGCAAGACAATGCAACAAATTCTCCGCCCACAAATG 812
Query 863 ATCTAATATGGTATCAATGTCGACATGTGATAAAGGGATTAGCTTTCCATCAACCAGTTG 922
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 813 ATCTAATATGGTTTCAATGCCGACATGTGATAAAGGGATTAGCTTTCCATCAACCAGTTG 872
Query 923 AAGAATAAGACTTTAGAGTTTGTTTGTATCTCTCTATTGTTGTAACTAAACCCTGTTGCA 982
|||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 873 AAGAGTAAGACTAGAGAGTTTGTATGTATCTCTATATTGTTGTAACTAAACCCTGTTCCA 932
Query 983 AATTT 987
||||
Sbjct 933 GATTT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5