BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03210.1
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311422 jgi|Araly1|311422|fgenesh1_pm.C_scaffold_1000202 1254 0.0
> Ahg311422 jgi|Araly1|311422|fgenesh1_pm.C_scaffold_1000202
Length=852
Score = 1254 bits (679), Expect = 0.0
Identities = 808/867 (93%), Gaps = 21/867 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTC 60
Query 61 AAAGGGAATCCAGCTGCTGTTTGCTTTCT--A-GA--A-GACGATAACGAGAGAGACGAC 114
||||||||||||||||||||||||||||| | || | |||||||| |||||||||||
Sbjct 61 AAAGGGAATCCAGCTGCTGTTTGCTTTCTGGACGACGATAACGATAACCAGAGAGACGAC 120
Query 115 GCGTGGCTTCAGTCTCTTGCCACCGAGTTCAATATCTCCGAGACTTGTTTCCTCACTCCG 174
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 121 GCGTGGCTTCAGTCTCTTGCTGCCGAGTTCAACCTCTCCGAGACTTGTTTCCTCACTCCG 180
Query 175 ATCATCGGAGACTTGCCTCGCTTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGAT 234
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCATCGGAGACTTCCCTCGATTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGAT 240
Query 235 TTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGGTTGGT 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 241 TTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGATTGTT 300
Query 295 TCAGAGACAGTTGAGTTCGACACATTATCAGGGATTCTAACAGCTAAACATCTCAAAAAT 354
||||| ||||||||||||| ||||||||||||| |||||||||||||||| || |||||
Sbjct 301 TCAGAAACAGTTGAGTTCGCCACATTATCAGGGGCTCTAACAGCTAAACATGTC-AAAAT 359
Query 355 GATGATGATGGAGAAGAATCAAGTATCGAATTGGATTTCCCTGTTGTTCCAACATATGAA 414
||||||| | || |||||||||||||||||| |||| || || | ||||
Sbjct 360 --TGATGAT------G----AA--ATCGAATTGGATTTCCCTCTTGTACCTACTTTTGAA 405
Query 415 GTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATT 465
Query 475 CTTGATGTCAAAGCCACAAAGAAAGACCTCCTCGTTGTGCTTTCATCTTGGGAAGCTGTT 534
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 466 GTTGATGTTAAAGCCACAAAGAAGGACATCCTCGTTGTGCTTTCATCTTGGGAAGCTGTC 525
Query 535 ATTGATTTGAAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTG 594
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATTGAATTGCAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTG 585
Query 595 ACTGCCGCTGCTTCTGATGGATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGA 654
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TCTGCCGCTGCTTCTGCTGAATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGA 645
Query 655 TTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCTCATTGTGCTTTAGCTCATTACTGG 714
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 646 TTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCGCATTGTGCCTTAGCACATTACTGG 705
Query 715 AGCCTCAGGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGAGGAACG 774
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 706 AGCCTCAAGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGGGGAACG 765
Query 775 TTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTACTGAGAGGCAAAGCAGTCACT 834
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 766 TTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTGCTCAGAGGCAAAGCAGTCACT 825
Query 835 GTTATGGAAGGTTATGTCTTAGTGTGA 861
||||||||||||||||||||||| |||
Sbjct 826 GTTATGGAAGGTTATGTCTTAGTTTGA 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31870758612
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5