BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03220.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470302 jgi|Araly1|470302|fgenesh2_kg.1__256__AT1G03230.1 2080 0.0
Ahg484681 jgi|Araly1|484681|fgenesh2_kg.5__673__AT1G03230.1 933 0.0
> Ahg470302 jgi|Araly1|470302|fgenesh2_kg.1__256__AT1G03230.1
Length=1414
Score = 2080 bits (1126), Expect = 0.0
Identities = 1257/1321 (95%), Gaps = 6/1321 (0%)
Strand=Plus/Plus
Query 13 TCTCTAACAATGGCGCcttctccgatcatcttctccgttcttcttctcttcatcttctca 72
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTAACAATGGCGTCTTCTCCAATCATCTTCTCCGTTCTTCTTCTCTTCATCTTCTCA 60
Query 73 ctctcatcatctGCTCAAACACCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAACAAAA 132
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTCATCATCTGCTCAAACATCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAACAAAA 120
Query 133 GACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCCGCT 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCCGCT 180
Query 193 TCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGGCTACGTC 252
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 TCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGACTACGTC 240
Query 253 TCCTCCACTTACCAGTCTCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGCTCCA-C 311
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct 241 TCCTCCACTTACCAATCTCCTCGCTGCAACTCCGCCGTGTGCTCACGCGCCGGCTCCAAC 300
Query 312 AAGCTGCGGCACATGCTTCTCCCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGGCGG 371
| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 A-GCTGCGGCACATGCTTTTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGGCGG 359
Query 372 CATTCCGGATAACACCGTTACCGGTACCGCAACTTCCGGCGAATTTGCTTTAGACGTTGT 431
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CATTCCAGATAACACCGTCACCGGTACCGCTACTTCCGGCGAATTTGCTTTAGACGTTGT 419
Query 432 GTCTATCCAGTCCACTAACGGATCCAATCCGGG-CAGGGTCGTTAAAATCCCAAATTTGA 490
||| ||||||||||||||||||||||||||||| | |||||||||||||||| || ||||
Sbjct 420 GTCGATCCAGTCCACTAACGGATCCAATCCGGGTC-GGGTCGTTAAAATCCCCAACTTGA 478
Query 491 TCTTCGATTGTGGAGCAACGTTTCTTCTTAAAGGACTCGCTAAAGGAACCGTTGGTATGG 550
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 479 TCTTCGATTGTGGAGCAACGTTTCTTCTTAAAGGACTTGCTAGTGGAACCGTTGGTATGG 538
Query 551 CGGGAATGGGACGTCACAACATCGGTTTACCGTCGCAATTCGCCGCCGCGTTTAGCTTCC 610
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 CCGGAATGGGACGTCACAACATCGGTTTACCGTCGCAGTTCGCCGCCGCGTTTAGCTTCA 598
Query 611 ACCGTAAATTCGCCGTCTGTCTAACTTCCGGTAAAGGCGTCGCCTTCTTCGGCAACGGAC 670
|||| ||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 599 ACCGCAAATTCGCCGTGTGTCTAACTTCCGGCAGAGGAGTCGCCTTCTTCGGCAACGGAC 658
Query 671 CTTACGTTTTCCTTCCCGGAATCCAGATCTCAAGTCTCCAAACGACGCCCCTTCTCATCA 730
||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |
Sbjct 659 CTTACGTTTTCCTCCCCGGAATCCAGATCTCAGGTCTCCAAACGACGCCGCTTCTCATTA 718
Query 731 ATCCGGTCAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATCCTCAGAGTACTTTATCG 790
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 ATCCGGTGAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATCCTCAGAGTACTTCATCG 778
Query 791 GCGTGACGGCGATTCAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGCTATTGAAGA 850
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 779 GCGTGACGGCGATTAAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGCTTTTGAAAA 838
Query 851 TTAACGCAAGTACCGGTAT-CGGAGGAACCAAAATCAGCTCCGTCAATCCTTACACGGTG 909
| |||||||||||||| || |||||||||||||||||||||||| ||||| |||||||||
Sbjct 839 TCAACGCAAGTACCGG-ATTCGGAGGAACCAAAATCAGCTCCGTGAATCCGTACACGGTG 897
Query 910 TTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTTAAACAAGCAGCGGCGAGG 969
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 TTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTCAAACAAGCAGCGGCGAGG 957
Query 970 AGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTTCAGCACGAAGAACGTC 1029
| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 958 AACATCACGAGAGTAGCGTCGGTGAAACCGTTCAGCGCGTGTTTCAGCACGCAGAACGTC 1017
Query 1030 GGCGTGACGCGCCTAGGATACGCCGTGCCGGAGATTGAGCTTGTGCTTCATAGCAAAGAC 1089
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1018 GGCGTCACGCGCCTGGGATACGCCGTGCCGGAGATTCAGCTTGTGCTTCATAGCAACGAC 1077
Query 1090 GTCGTTTGGAGGATATTTGGAGCCAACTCGATGGTGAGTGTCAGTGATGACGTCATCTGT 1149
||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1078 GTCGTCTGGAGGATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACGTCATCTGC 1137
Query 1150 TTGGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTTGTGATTGGAGGGTTTCAG 1209
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1138 TTAGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTGGTGATCGGAGGGTTTCAG 1197
Query 1210 TTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAATTTGGGTTTAGTTCCACG 1269
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 TTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAGATTTGGGTTTAGTTCCACG 1257
Query 1270 TTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTTGATTAAAT 1329
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TTATTGGGCCGTCGCACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTTGATTAAAT 1317
Query 1330 T 1330
|
Sbjct 1318 T 1318
Score = 121 bits (65), Expect = 2e-26
Identities = 88/98 (90%), Gaps = 6/98 (6%)
Strand=Plus/Plus
Query 1372 TATTATATTATGTTTGATGTGATTAATAAAGAGCCAATGGAATCATTAT-TTGGCATTTG 1430
||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 1320 TATTATATTATGTTTGATGTGATTAATAAGGAGCCAATGGAATCATT-TCTTGGCATTT- 1377
Query 1431 TT-ATCAACT-GATTTGAATAAATTATGTAACGAGTGA 1466
|| |||| || ||||| |||||||||||||| || |||
Sbjct 1378 TTCATCA-CTTGATTTAAATAAATTATGTAATGAATGA 1414
> Ahg484681 jgi|Araly1|484681|fgenesh2_kg.5__673__AT1G03230.1
Length=1298
Score = 933 bits (505), Expect = 0.0
Identities = 659/733 (90%), Gaps = 12/733 (2%)
Strand=Plus/Plus
Query 10 TCATCTCTAACAATGGCGCcttctccgatcatcttctccgttcttcttctcttcatcttc 69
||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 1 TCATCTCTAACAATGGCATCTTCTCAAATCATCTTCTCCATTCTTCTTCTCTTCATCTTC 60
Query 70 tcactctcatcatctGCTCAAA-CACCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAAC 128
|||||||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||
Sbjct 61 TCACTCTCATCATCTGCT-AAACCATCTTCCCGTCCCAAAGCTCTCCTTCTCCCAGTAAC 119
Query 129 AAAAGACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCC 188
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 120 AAAAGACCAATCTACCCTCCAATACACAACCATCATCAACCAACGCACACCTCTCGTCCC 179
Query 189 CGCTTCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGGCTA 248
|||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||
Sbjct 180 CGCTTCCGTCGTCTTCGACCTCAGTGGCCGAGAACTCTGGGTCGACTGTGATAAAGGCTA 239
Query 249 CGTCTCCTCCACTTACCAGTCTCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGCTC 308
|||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTCTCAACCACATACCACTCCCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGCTC 299
Query 309 CA-CAAGCTGCGGCACATGCTTCTCCCCTCCGAGACCTGGCTGTAGTAACAACACTTGCG 367
|| || ||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 300 CATCA-GCTGCGGTACATGCTTCTCACCTCCAAAACCTGGCTGTAGTAACAACACTTGCG 358
Query 368 GCGGCATT-CCGGATAACACCGTTACCGGTACCG-CAACTTCCGGCGAATTTGCTTTAGA 425
||| | || || |||| |||| ||||| | | ||||||| |||||||||||||||||
Sbjct 359 GCG-CTTTTCCATCTAACTCCGTCACCGG-ATGGTCAACTTCAGGCGAATTTGCTTTAGA 416
Query 426 CGTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGG-CAGGGTCGTTAAAATCCCAA 484
|||||| ||||| ||||| |||||||||||||| ||||| | || ||||||||||||| |
Sbjct 417 CGTTGTCTCTATTCAGTCAACTAACGGATCCAACCCGGGTC-GGTTCGTTAAAATCCCCA 475
Query 485 ATTTGATCTTC-GATTGTGGAGCAACGTTTCTTCTTAAAGGACTCGCTAAAGGAACCGTT 543
|| | || ||| | ||| ||| |||| | |||||||||||||||||||||||||||||||
Sbjct 476 ATATAATATTCAG-TTGCGGATCAACCTCTCTTCTTAAAGGACTCGCTAAAGGAACCGTT 534
Query 544 GGTATGGCGGGAATGGGACGTCACAACATCGGTTTACCGTCGCAATTCGCCGCCGCGTTT 603
|||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||||||||
Sbjct 535 GGTATGGCTGGAATGGGACGTCACAAAATCAGCTTACCGTCTCAATTCGCCGCCGCGTTT 594
Query 604 AGCTTCCACCGTAAATTCGCCGTCTGTCTAACTTCCGGTAAAGGCGTCGCCTTCTTCGGC 663
|||||| |||||||||||||||| ||||| |||||||||| ||||||| |||||||||||
Sbjct 595 AGCTTCAACCGTAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCACCTTCTTCGGC 654
Query 664 AACGGACCTTACGTTTTCCTTCCCGGAATCCAGATCTCAAGTCTCCAAACGACGCCCCTT 723
|||||||||||||||||||| ||||||||||| |||||| |||| |||| || || |||
Sbjct 655 AACGGACCTTACGTTTTCCTCCCCGGAATCCAAATCTCACGTCTTCAAAAAACTCCGCTT 714
Query 724 CTCATCAATCCGG 736
|||||||||||||
Sbjct 715 CTCATCAATCCGG 727
Score = 686 bits (371), Expect = 0.0
Identities = 499/559 (89%), Gaps = 16/559 (3%)
Strand=Plus/Plus
Query 778 GAGTACTTT-ATCGGCGTGACGGCGATTCAA-ATCGTCGAGAAAACAGTTCCGATCAATC 835
||||| ||| |||||||| | || |||| || ||||| ||||||||||||||||||||||
Sbjct 730 GAGTA-TTTCATCGGCGTAAGGGAGATT-AAGATCGTGGAGAAAACAGTTCCGATCAATC 787
Query 836 CAACGCTATTGAAGATTAACGCAAG-TACCGGTA-TCGGAGGAACCAAA-ATCAGCTCCG 892
|| |||||||||||| ||| ||| || || | ||||||| | |||| ||||||||||
Sbjct 788 AAATGCTATTGAAGATCAAC-AAAGAAACTGG-ATTCGGAGGTA-CAAAGATCAGCTCCG 844
Query 893 TCAATCCTTACACGGTGTTGGAGTCATCGATC--TACAATGCTTTTACGTCGGA-GTTCG 949
| ||||| ||||| |||||||||||||||||| || ||| |||||||||| || ||| |
Sbjct 845 TAAATCCGTACACTGTGTTGGAGTCATCGATCTTTA-AAT-CTTTTACGTC-GATGTTTG 901
Query 950 TTAAACAAGCAGCGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGT 1009
||| ||||||| | ||||||| ||| | |||||||||||||||||||||||| ||||||
Sbjct 902 TTAGACAAGCAACAGCGAGGAACATGACGAGAGTAGCGTCGGTGAAACCGTTTAGCGCGT 961
Query 1010 GTTTCAGCACGAAGAACGTCGGCGTGACGCGCCTAGGATACGCCGTGCCGGAGATTGAGC 1069
||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 962 GTTTCAGCACGCAGAACGTCGGCGTCACGCGCCTAGGATACGCAGTGCCGGAGATTCAGC 1021
Query 1070 TTGTGCTTCATAGCAAAGACGTCGTTTGGAGGATATTTGGAGCCAACTCGATGGTGAGTG 1129
|||||||||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 1022 TTGTGCTTCATAGCAATGACGTTGTTTGGAGGATCTTTGGAGGTAACTCGATGGTGAGTG 1081
Query 1130 TCAGTGATGACGTCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTG 1189
| |||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1082 TTAGTGATGATGTCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCGAGAACCTCTG 1141
Query 1190 TTGTGATTGGAGGGTTTCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACA 1249
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1142 TGGTGATCGGAGGGTTTCAGTTGGAGGATAATTTGATTGAATTTGATTTGGCGAGTAACA 1201
Query 1250 AATTTGGGTTTAGTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCA 1309
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GATTTGGGTTTAGTTCTACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCA 1261
Query 1310 CTTCCACTGCTTGATTAAA 1328
|||| |||| |||||||||
Sbjct 1262 CTTCTACTGTTTGATTAAA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5