BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03230.1
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470302 jgi|Araly1|470302|fgenesh2_kg.1__256__AT1G03230.1 1799 0.0
Ahg484681 jgi|Araly1|484681|fgenesh2_kg.5__673__AT1G03230.1 1027 0.0
> Ahg470302 jgi|Araly1|470302|fgenesh2_kg.1__256__AT1G03230.1
Length=1414
Score = 1799 bits (974), Expect = 0.0
Identities = 1214/1329 (91%), Gaps = 19/1329 (1%)
Strand=Plus/Plus
Query 11 TCTCTAACAATGGCGtcttctcgaatcatcatcttctccgttcttcttctctccatcttc 70
|||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1 TCTCTAACAATGGCGTCTTCTC-CA--ATCATCTTCTCCGTTCTTCTTCTCTTCATCTTC 57
Query 71 tcactctcatcatctGCCCAACCATCTTTCCGCCCCAAAGCTCTCCTTCTCCCAGTAACA 130
||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 58 TCACTTTCATCATCTGCTCAAACATCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAACA 117
Query 131 AAAGACCCATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCC 190
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAAGACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCC 177
Query 191 GCTTCCGTCGTATTCGACCTCGGTGGTCGAGAATTCTGGGTCGACTGTGACCAAGGCTAC 250
||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||| ||||
Sbjct 178 GCTTCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGACTAC 237
Query 251 GTCTCCACCACTTACCGCTCTCCTCGCTGCAACTCCGCTGTCTGCTCACGCGCCGGCTCC 310
|||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 238 GTCTCCTCCACTTACCAATCTCCTCGCTGCAACTCCGCCGTGTGCTCACGCGCCGGCTCC 297
Query 311 ATC-GCCTGCGGCACATGCTTCTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGG 369
| | || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACAGC-TGCGGCACATGCTTTTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGG 356
Query 370 CG-CTTTTCCAGATAACTCCATCACCGG-ATGGGCAACCTCGGGCGAATTTGCTTTAGAC 427
|| | || ||||||||| || ||||||| | | | || || ||||||||||||||||||
Sbjct 357 CGGCATT-CCAGATAACACCGTCACCGGTACCG-CTACTTCCGGCGAATTTGCTTTAGAC 414
Query 428 GTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGGTCGGTTCGTTAAAATCCCCAAT 487
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 415 GTTGTGTCGATCCAGTCCACTAACGGATCCAATCCGGGTCGGGTCGTTAAAATCCCCAA- 473
Query 488 CTA-ATATTC-AGTTGCGGATCAACGTCTCTTCTTAAAGGACTCGCTAAAGGAGCCGTTG 545
|| || ||| | ||| ||| |||||| ||||||||||||||| |||| ||| ||||||
Sbjct 474 CTTGATCTTCGA-TTGTGGAGCAACGTTTCTTCTTAAAGGACTTGCTAGTGGAACCGTTG 532
Query 546 GTATGGCTGGAATGGGACGTCACAACATCGGCTTACCGTTGCAGTTCGCCGCCGCGTTTA 605
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 533 GTATGGCCGGAATGGGACGTCACAACATCGGTTTACCGTCGCAGTTCGCCGCCGCGTTTA 592
Query 606 GCTTCAACCGCAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCGCCTTCTTCGGCA 665
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 593 GCTTCAACCGCAAATTCGCCGTGTGTCTAACTTCCGGCAGAGGAGTCGCCTTCTTCGGCA 652
Query 666 ACGGACCTTACGTTTTCCTCCCCGGGATCCAGATCTCAAGG-CTTCAAAAGACACCGCTT 724
||||||||||||||||||||||||| |||||||||||| || || |||| ||| ||||||
Sbjct 653 ACGGACCTTACGTTTTCCTCCCCGGAATCCAGATCTCA-GGTCTCCAAACGACGCCGCTT 711
Query 725 CTCATCAATCCAGG-GACCACTGTTTTTGAGTTTTCAAAAGGCGAGAAGTCGC-CGGAGT 782
||||| ||||| || || ||||| || || ||||||| |||| ||||| || | | ||||
Sbjct 712 CTCATTAATCC-GGTGAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATC-CTCAGAGT 769
Query 783 ATTTTATCGGCGTGACGGCGATTAAGATCGTCGAGAAAACACTTCCAATCGATCCAACGC 842
| || |||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||
Sbjct 770 ACTTCATCGGCGTGACGGCGATTAAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGC 829
Query 843 TTTTGAAGATAAACGCAAGTACTGGAATAGGAGGAACCAAAATCAGCTCCGTCAATCCTT 902
||||||| || ||||||||||| ||| | ||||||||||||||||||||||| ||||| |
Sbjct 830 TTTTGAAAATCAACGCAAGTACCGGATTCGGAGGAACCAAAATCAGCTCCGTGAATCCGT 889
Query 903 ACACGGTGTTGGAGTCATCGATCTACAAAGCTTTTACGTCGGAGTTTATTAGACAAGCAG 962
|||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||
Sbjct 890 ACACGGTGTTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTCAAACAAGCAG 949
Query 963 CGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTTCAGCACGA 1022
||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 950 CGGCGAGGAACATCACGAGAGTAGCGTCGGTGAAACCGTTCAGCGCGTGTTTCAGCACGC 1009
Query 1023 AGAACGTTGGCGTCACGCGCCTAGGATACGCCGTACCGGAGATTCAGCTCGTGCTTCATA 1082
||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 1010 AGAACGTCGGCGTCACGCGCCTGGGATACGCCGTGCCGGAGATTCAGCTTGTGCTTCATA 1069
Query 1083 GCAAAGACGTCGTTTGGAGAATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACG 1142
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GCAACGACGTCGTCTGGAGGATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACG 1129
Query 1143 TCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAACCCAGGAGCCTCTGTGGTGATCGGAG 1202
||||||| || |||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1130 TCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTGGTGATCGGAG 1189
Query 1203 GGTTCCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAATTTGGGTTTA 1262
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1190 GGTTTCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAGATTTGGGTTTA 1249
Query 1263 GTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTTAATTTCACTTCCACTGCTT 1322
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1250 GTTCCACGTTATTGGGCCGTCGCACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTT 1309
Query 1323 GATTAAATT 1331
|||||||||
Sbjct 1310 GATTAAATT 1318
> Ahg484681 jgi|Araly1|484681|fgenesh2_kg.5__673__AT1G03230.1
Length=1298
Score = 1027 bits (556), Expect = 0.0
Identities = 676/734 (92%), Gaps = 7/734 (1%)
Strand=Plus/Plus
Query 8 TCATCTCTAACAATGGCGtcttctcgaatcatcatcttctccgttcttcttctctccatc 67
||||||||||||||||| ||||||| || |||||||||||| |||||||||||| ||||
Sbjct 1 TCATCTCTAACAATGGCATCTTCTC-AA--ATCATCTTCTCCATTCTTCTTCTCTTCATC 57
Query 68 ttctcactctcatcatctGCCCAACCATCTTTCCGCCCCAAAGCTCTCCTTCTCCCAGTA 127
|||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 58 TTCTCACTCTCATCATCTGCTAAACCATCTTCCCGTCCCAAAGCTCTCCTTCTCCCAGTA 117
Query 128 ACAAAAGACCCATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTC 187
|||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 118 ACAAAAGACCAATCTACCCTCCAATACACAACCATCATCAACCAACGCACACCTCTCGTC 177
Query 188 CCCGCTTCCGTCGTATTCGACCTCGGTGGTCGAGAATTCTGGGTCGACTGTGACCAAGGC 247
|||||||||||||| ||||||||| |||| |||||| |||||||||||||||| |||||
Sbjct 178 CCCGCTTCCGTCGTCTTCGACCTCAGTGGCCGAGAACTCTGGGTCGACTGTGATAAAGGC 237
Query 248 TACGTCTCCACCACTTACCGCTCTCCTCGCTGCAACTCCGCTGTCTGCTCACGCGCCGGC 307
|||||||| ||||| |||| ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 238 TACGTCTCAACCACATACCACTCCCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGC 297
Query 308 TCCATC-GCCTGCGGCACATGCTTCTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTG 366
|||||| || ||||| ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 298 TCCATCAGC-TGCGGTACATGCTTCTCACCTCCAAAACCTGGCTGTAGTAACAACACTTG 356
Query 367 CGGCGCTTTTCCAGATAACTCCATCACCGGATGGGCAACCTCGGGCGAATTTGCTTTAGA 426
||||||||||||| ||||||| ||||||||||| |||| || |||||||||||||||||
Sbjct 357 CGGCGCTTTTCCATCTAACTCCGTCACCGGATGGTCAACTTCAGGCGAATTTGCTTTAGA 416
Query 427 CGTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGGTCGGTTCGTTAAAATCCCCAA 486
|||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 CGTTGTCTCTATTCAGTCAACTAACGGATCCAACCCGGGTCGGTTCGTTAAAATCCCCAA 476
Query 487 TCTAATATTCAGTTGCGGATCAACGTCTCTTCTTAAAGGACTCGCTAAAGGAGCCGTTGG 546
| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 477 TATAATATTCAGTTGCGGATCAACCTCTCTTCTTAAAGGACTCGCTAAAGGAACCGTTGG 536
Query 547 TATGGCTGGAATGGGACGTCACAACATCGGCTTACCGT-TGCAGTTCGCCGCCGCGTTTA 605
|||||||||||||||||||||||| ||| ||||||||| | || ||||||||||||||||
Sbjct 537 TATGGCTGGAATGGGACGTCACAAAATCAGCTTACCGTCT-CAATTCGCCGCCGCGTTTA 595
Query 606 GCTTCAACCGCAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCGCCTTCTTCGGCA 665
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 GCTTCAACCGTAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCACCTTCTTCGGCA 655
Query 666 ACGGACCTTACGTTTTCCTCCCCGGGATCCAGATCTCAAGGCTTCAAAAGACACCGCTTC 725
||||||||||||||||||||||||| ||||| |||||| | |||||||| || |||||||
Sbjct 656 ACGGACCTTACGTTTTCCTCCCCGGAATCCAAATCTCACGTCTTCAAAAAACTCCGCTTC 715
Query 726 TCATCAATCCAGGG 739
|||||||||| |||
Sbjct 716 TCATCAATCCGGGG 729
Score = 682 bits (369), Expect = 0.0
Identities = 495/556 (89%), Gaps = 8/556 (1%)
Strand=Plus/Plus
Query 778 GGAGTATTTTATCGGCGTGACGGCGATTAAGATCGTCGAGAAAACACTTCCAATCGATCC 837
||||||||| |||||||| | || |||||||||||| ||||||||| |||| ||| |||
Sbjct 729 GGAGTATTTCATCGGCGTAAGGGAGATTAAGATCGTGGAGAAAACAGTTCCGATCAATCA 788
Query 838 AACGCTTTTGAAGATAAACGCAAG-TACTGGAATAGGAGGAACCAAA-ATCAGCTCCGTC 895
|| ||| |||||||| ||| ||| |||||| | ||||| | |||| |||||||||||
Sbjct 789 AATGCTATTGAAGATCAAC-AAAGAAACTGGATTCGGAGGTA-CAAAGATCAGCTCCGTA 846
Query 896 AATCCTTACACGGTGTTGGAGTCATCGATCTACAAAGCTTTTACGTCGGA-GTTTATTAG 954
||||| ||||| ||||||||||||||||||| ||| |||||||||| || |||| ||||
Sbjct 847 AATCCGTACACTGTGTTGGAGTCATCGATCTTTAAATCTTTTACGTC-GATGTTTGTTAG 905
Query 955 ACAAGCAGCGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTT 1014
||||||| | ||||||| ||| | |||||||||||||||||||||||| ||||||||||
Sbjct 906 ACAAGCAACAGCGAGGAACATGACGAGAGTAGCGTCGGTGAAACCGTTTAGCGCGTGTTT 965
Query 1015 CAGCACGAAGAACGTTGGCGTCACGCGCCTAGGATACGCCGTACCGGAGATTCAGCTCGT 1074
||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 966 CAGCACGCAGAACGTCGGCGTCACGCGCCTAGGATACGCAGTGCCGGAGATTCAGCTTGT 1025
Query 1075 GCTTCATAGCAAAGACGTCGTTTGGAGAATCTTTGGAGCTAACTCGATGGTGAGTGTCAG 1134
|||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| ||
Sbjct 1026 GCTTCATAGCAATGACGTTGTTTGGAGGATCTTTGGAGGTAACTCGATGGTGAGTGTTAG 1085
Query 1135 TGATGACGTCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAAC-CCAGGAGCCTCTGTGG 1193
|||||| |||||||| || |||||||||||||||||||||||| | | || |||||||||
Sbjct 1086 TGATGATGTCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCGA-GAACCTCTGTGG 1144
Query 1194 TGATCGGAGGGTTCCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAAT 1253
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1145 TGATCGGAGGGTTTCAGTTGGAGGATAATTTGATTGAATTTGATTTGGCGAGTAACAGAT 1204
Query 1254 TTGGGTTTAGTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTTAATTTCACTT 1313
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1205 TTGGGTTTAGTTCTACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCACTT 1264
Query 1314 CCACTGCTTGATTAAA 1329
| |||| |||||||||
Sbjct 1265 CTACTGTTTGATTAAA 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56221201620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5