BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03230.1 Length=1502 Score E Sequences producing significant alignments: (Bits) Value Ahg470302 jgi|Araly1|470302|fgenesh2_kg.1__256__AT1G03230.1 1799 0.0 Ahg484681 jgi|Araly1|484681|fgenesh2_kg.5__673__AT1G03230.1 1027 0.0 > Ahg470302 jgi|Araly1|470302|fgenesh2_kg.1__256__AT1G03230.1 Length=1414 Score = 1799 bits (974), Expect = 0.0 Identities = 1214/1329 (91%), Gaps = 19/1329 (1%) Strand=Plus/Plus Query 11 TCTCTAACAATGGCGtcttctcgaatcatcatcttctccgttcttcttctctccatcttc 70 |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| Sbjct 1 TCTCTAACAATGGCGTCTTCTC-CA--ATCATCTTCTCCGTTCTTCTTCTCTTCATCTTC 57 Query 71 tcactctcatcatctGCCCAACCATCTTTCCGCCCCAAAGCTCTCCTTCTCCCAGTAACA 130 ||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| Sbjct 58 TCACTTTCATCATCTGCTCAAACATCTTTCCGTCCCAAAGCTCTCCTTCTCCCAGTAACA 117 Query 131 AAAGACCCATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCC 190 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 AAAGACCAATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTCCCC 177 Query 191 GCTTCCGTCGTATTCGACCTCGGTGGTCGAGAATTCTGGGTCGACTGTGACCAAGGCTAC 250 ||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||| |||| Sbjct 178 GCTTCCGTCGTCTTCGACCTCGGTGGTCGAGAACTCTGGGTCGACTGCGACAAAGACTAC 237 Query 251 GTCTCCACCACTTACCGCTCTCCTCGCTGCAACTCCGCTGTCTGCTCACGCGCCGGCTCC 310 |||||| ||||||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct 238 GTCTCCTCCACTTACCAATCTCCTCGCTGCAACTCCGCCGTGTGCTCACGCGCCGGCTCC 297 Query 311 ATC-GCCTGCGGCACATGCTTCTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGG 369 | | || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 298 AACAGC-TGCGGCACATGCTTTTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTGCGG 356 Query 370 CG-CTTTTCCAGATAACTCCATCACCGG-ATGGGCAACCTCGGGCGAATTTGCTTTAGAC 427 || | || ||||||||| || ||||||| | | | || || |||||||||||||||||| Sbjct 357 CGGCATT-CCAGATAACACCGTCACCGGTACCG-CTACTTCCGGCGAATTTGCTTTAGAC 414 Query 428 GTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGGTCGGTTCGTTAAAATCCCCAAT 487 |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 415 GTTGTGTCGATCCAGTCCACTAACGGATCCAATCCGGGTCGGGTCGTTAAAATCCCCAA- 473 Query 488 CTA-ATATTC-AGTTGCGGATCAACGTCTCTTCTTAAAGGACTCGCTAAAGGAGCCGTTG 545 || || ||| | ||| ||| |||||| ||||||||||||||| |||| ||| |||||| Sbjct 474 CTTGATCTTCGA-TTGTGGAGCAACGTTTCTTCTTAAAGGACTTGCTAGTGGAACCGTTG 532 Query 546 GTATGGCTGGAATGGGACGTCACAACATCGGCTTACCGTTGCAGTTCGCCGCCGCGTTTA 605 ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 533 GTATGGCCGGAATGGGACGTCACAACATCGGTTTACCGTCGCAGTTCGCCGCCGCGTTTA 592 Query 606 GCTTCAACCGCAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCGCCTTCTTCGGCA 665 |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 593 GCTTCAACCGCAAATTCGCCGTGTGTCTAACTTCCGGCAGAGGAGTCGCCTTCTTCGGCA 652 Query 666 ACGGACCTTACGTTTTCCTCCCCGGGATCCAGATCTCAAGG-CTTCAAAAGACACCGCTT 724 ||||||||||||||||||||||||| |||||||||||| || || |||| ||| |||||| Sbjct 653 ACGGACCTTACGTTTTCCTCCCCGGAATCCAGATCTCA-GGTCTCCAAACGACGCCGCTT 711 Query 725 CTCATCAATCCAGG-GACCACTGTTTTTGAGTTTTCAAAAGGCGAGAAGTCGC-CGGAGT 782 ||||| ||||| || || ||||| || || ||||||| |||| ||||| || | | |||| Sbjct 712 CTCATTAATCC-GGTGAGCACTGCTTCTGCGTTTTCACAAGGTGAGAAATC-CTCAGAGT 769 Query 783 ATTTTATCGGCGTGACGGCGATTAAGATCGTCGAGAAAACACTTCCAATCGATCCAACGC 842 | || |||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||| Sbjct 770 ACTTCATCGGCGTGACGGCGATTAAAATCGTCGAGAAAACAGTTCCGATCAATCCAACGC 829 Query 843 TTTTGAAGATAAACGCAAGTACTGGAATAGGAGGAACCAAAATCAGCTCCGTCAATCCTT 902 ||||||| || ||||||||||| ||| | ||||||||||||||||||||||| ||||| | Sbjct 830 TTTTGAAAATCAACGCAAGTACCGGATTCGGAGGAACCAAAATCAGCTCCGTGAATCCGT 889 Query 903 ACACGGTGTTGGAGTCATCGATCTACAAAGCTTTTACGTCGGAGTTTATTAGACAAGCAG 962 |||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||| Sbjct 890 ACACGGTGTTGGAGTCATCGATCTACAATGCTTTTACGTCGGAGTTCGTCAAACAAGCAG 949 Query 963 CGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTTCAGCACGA 1022 ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 950 CGGCGAGGAACATCACGAGAGTAGCGTCGGTGAAACCGTTCAGCGCGTGTTTCAGCACGC 1009 Query 1023 AGAACGTTGGCGTCACGCGCCTAGGATACGCCGTACCGGAGATTCAGCTCGTGCTTCATA 1082 ||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 1010 AGAACGTCGGCGTCACGCGCCTGGGATACGCCGTGCCGGAGATTCAGCTTGTGCTTCATA 1069 Query 1083 GCAAAGACGTCGTTTGGAGAATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACG 1142 |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1070 GCAACGACGTCGTCTGGAGGATCTTTGGAGCTAACTCGATGGTGAGTGTCAGTGATGACG 1129 Query 1143 TCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAACCCAGGAGCCTCTGTGGTGATCGGAG 1202 ||||||| || |||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 1130 TCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCAAGAACCTCTGTGGTGATCGGAG 1189 Query 1203 GGTTCCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAATTTGGGTTTA 1262 |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1190 GGTTTCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAGATTTGGGTTTA 1249 Query 1263 GTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTTAATTTCACTTCCACTGCTT 1322 ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1250 GTTCCACGTTATTGGGCCGTCGCACTAACTGCGCCAACTTCAATTTCACTTCCACTGCTT 1309 Query 1323 GATTAAATT 1331 ||||||||| Sbjct 1310 GATTAAATT 1318 > Ahg484681 jgi|Araly1|484681|fgenesh2_kg.5__673__AT1G03230.1 Length=1298 Score = 1027 bits (556), Expect = 0.0 Identities = 676/734 (92%), Gaps = 7/734 (1%) Strand=Plus/Plus Query 8 TCATCTCTAACAATGGCGtcttctcgaatcatcatcttctccgttcttcttctctccatc 67 ||||||||||||||||| ||||||| || |||||||||||| |||||||||||| |||| Sbjct 1 TCATCTCTAACAATGGCATCTTCTC-AA--ATCATCTTCTCCATTCTTCTTCTCTTCATC 57 Query 68 ttctcactctcatcatctGCCCAACCATCTTTCCGCCCCAAAGCTCTCCTTCTCCCAGTA 127 |||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct 58 TTCTCACTCTCATCATCTGCTAAACCATCTTCCCGTCCCAAAGCTCTCCTTCTCCCAGTA 117 Query 128 ACAAAAGACCCATCTACCCTCCAGTACACAACCGTCATCAACCAACGCACACCTCTCGTC 187 |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 118 ACAAAAGACCAATCTACCCTCCAATACACAACCATCATCAACCAACGCACACCTCTCGTC 177 Query 188 CCCGCTTCCGTCGTATTCGACCTCGGTGGTCGAGAATTCTGGGTCGACTGTGACCAAGGC 247 |||||||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||| Sbjct 178 CCCGCTTCCGTCGTCTTCGACCTCAGTGGCCGAGAACTCTGGGTCGACTGTGATAAAGGC 237 Query 248 TACGTCTCCACCACTTACCGCTCTCCTCGCTGCAACTCCGCTGTCTGCTCACGCGCCGGC 307 |||||||| ||||| |||| ||| ||||||||||||||||| ||||||||||| |||||| Sbjct 238 TACGTCTCAACCACATACCACTCCCCTCGCTGCAACTCCGCCGTCTGCTCACGTGCCGGC 297 Query 308 TCCATC-GCCTGCGGCACATGCTTCTCTCCTCCGAGACCTGGCTGTAGTAACAACACTTG 366 |||||| || ||||| ||||||||||| ||||| | |||||||||||||||||||||||| Sbjct 298 TCCATCAGC-TGCGGTACATGCTTCTCACCTCCAAAACCTGGCTGTAGTAACAACACTTG 356 Query 367 CGGCGCTTTTCCAGATAACTCCATCACCGGATGGGCAACCTCGGGCGAATTTGCTTTAGA 426 ||||||||||||| ||||||| ||||||||||| |||| || ||||||||||||||||| Sbjct 357 CGGCGCTTTTCCATCTAACTCCGTCACCGGATGGTCAACTTCAGGCGAATTTGCTTTAGA 416 Query 427 CGTTGTGTCTATCCAGTCCACTAACGGATCCAATCCGGGTCGGTTCGTTAAAATCCCCAA 486 |||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 417 CGTTGTCTCTATTCAGTCAACTAACGGATCCAACCCGGGTCGGTTCGTTAAAATCCCCAA 476 Query 487 TCTAATATTCAGTTGCGGATCAACGTCTCTTCTTAAAGGACTCGCTAAAGGAGCCGTTGG 546 | |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 477 TATAATATTCAGTTGCGGATCAACCTCTCTTCTTAAAGGACTCGCTAAAGGAACCGTTGG 536 Query 547 TATGGCTGGAATGGGACGTCACAACATCGGCTTACCGT-TGCAGTTCGCCGCCGCGTTTA 605 |||||||||||||||||||||||| ||| ||||||||| | || |||||||||||||||| Sbjct 537 TATGGCTGGAATGGGACGTCACAAAATCAGCTTACCGTCT-CAATTCGCCGCCGCGTTTA 595 Query 606 GCTTCAACCGCAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCGCCTTCTTCGGCA 665 |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 596 GCTTCAACCGTAAATTCGCCGTGTGTCTTACTTCCGGTAGAGGCGTCACCTTCTTCGGCA 655 Query 666 ACGGACCTTACGTTTTCCTCCCCGGGATCCAGATCTCAAGGCTTCAAAAGACACCGCTTC 725 ||||||||||||||||||||||||| ||||| |||||| | |||||||| || ||||||| Sbjct 656 ACGGACCTTACGTTTTCCTCCCCGGAATCCAAATCTCACGTCTTCAAAAAACTCCGCTTC 715 Query 726 TCATCAATCCAGGG 739 |||||||||| ||| Sbjct 716 TCATCAATCCGGGG 729 Score = 682 bits (369), Expect = 0.0 Identities = 495/556 (89%), Gaps = 8/556 (1%) Strand=Plus/Plus Query 778 GGAGTATTTTATCGGCGTGACGGCGATTAAGATCGTCGAGAAAACACTTCCAATCGATCC 837 ||||||||| |||||||| | || |||||||||||| ||||||||| |||| ||| ||| Sbjct 729 GGAGTATTTCATCGGCGTAAGGGAGATTAAGATCGTGGAGAAAACAGTTCCGATCAATCA 788 Query 838 AACGCTTTTGAAGATAAACGCAAG-TACTGGAATAGGAGGAACCAAA-ATCAGCTCCGTC 895 || ||| |||||||| ||| ||| |||||| | ||||| | |||| ||||||||||| Sbjct 789 AATGCTATTGAAGATCAAC-AAAGAAACTGGATTCGGAGGTA-CAAAGATCAGCTCCGTA 846 Query 896 AATCCTTACACGGTGTTGGAGTCATCGATCTACAAAGCTTTTACGTCGGA-GTTTATTAG 954 ||||| ||||| ||||||||||||||||||| ||| |||||||||| || |||| |||| Sbjct 847 AATCCGTACACTGTGTTGGAGTCATCGATCTTTAAATCTTTTACGTC-GATGTTTGTTAG 905 Query 955 ACAAGCAGCGGCGAGGAGCATCAAGAGAGTAGCGTCGGTGAAACCGTTCGGCGCGTGTTT 1014 ||||||| | ||||||| ||| | |||||||||||||||||||||||| |||||||||| Sbjct 906 ACAAGCAACAGCGAGGAACATGACGAGAGTAGCGTCGGTGAAACCGTTTAGCGCGTGTTT 965 Query 1015 CAGCACGAAGAACGTTGGCGTCACGCGCCTAGGATACGCCGTACCGGAGATTCAGCTCGT 1074 ||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||| || Sbjct 966 CAGCACGCAGAACGTCGGCGTCACGCGCCTAGGATACGCAGTGCCGGAGATTCAGCTTGT 1025 Query 1075 GCTTCATAGCAAAGACGTCGTTTGGAGAATCTTTGGAGCTAACTCGATGGTGAGTGTCAG 1134 |||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||| || Sbjct 1026 GCTTCATAGCAATGACGTTGTTTGGAGGATCTTTGGAGGTAACTCGATGGTGAGTGTTAG 1085 Query 1135 TGATGACGTCATCTGTTTGGGTTTCGTTGACGGAGGAGTCAAC-CCAGGAGCCTCTGTGG 1193 |||||| |||||||| || |||||||||||||||||||||||| | | || ||||||||| Sbjct 1086 TGATGATGTCATCTGCTTAGGTTTCGTTGACGGAGGAGTCAACGCGA-GAACCTCTGTGG 1144 Query 1194 TGATCGGAGGGTTCCAGTTGGAGGATAATTTGATCGAATTTGATTTGGCGAGTAACAAAT 1253 ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1145 TGATCGGAGGGTTTCAGTTGGAGGATAATTTGATTGAATTTGATTTGGCGAGTAACAGAT 1204 Query 1254 TTGGGTTTAGTTCCACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTTAATTTCACTT 1313 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1205 TTGGGTTTAGTTCTACGTTATTGGGCCGTCAAACTAACTGCGCCAACTTCAATTTCACTT 1264 Query 1314 CCACTGCTTGATTAAA 1329 | |||| ||||||||| Sbjct 1265 CTACTGTTTGATTAAA 1280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56221201620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5