BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03250.2
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470303 jgi|Araly1|470303|fgenesh2_kg.1__257__AT1G03250.1 1458 0.0
> Ahg470303 jgi|Araly1|470303|fgenesh2_kg.1__257__AT1G03250.1
Length=1078
Score = 1458 bits (789), Expect = 0.0
Identities = 938/1006 (93%), Gaps = 26/1006 (3%)
Strand=Plus/Plus
Query 169 CGGTTTTCTGTTCAAATCAGCGGATTTCCTCACATTTAATTGTTCAATCATGGCGGCTAC 228
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 92 CGGTTTTCTGTTCAAATCAGCCGATTTCCTCACATTTAATTGTTGAATCATGGCGGCTAC 151
Query 229 CAATGTCATGCGGCGAGACGAGAGCCTTCTTATTGATCCCCAAAGAGGAGATACAAGTGT 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 152 CAATGTCATGCGGCGAGACGAGAGCCTTCTTATTGATCCCCAAAGAGGAGATACTAGTGT 211
Query 289 TTCTCGTGGCCTCTCGCTTGAGAAGAAAATTGAGGCCCTTGAGAGCCTGGCCGGACAAGT 348
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 212 TTCTCGTGGCCTCTCGCTTGAGAAGAAAATTGAGGCCCTTGAGAGCCTGGCGGGACAAGT 271
Query 349 TAGTAACAGGCGATCTCGGAGATGGTTAAATGATCGTATTCTGATGGAACTTGTTCCTCG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 TAGTAACAGGCGATCTCGGAGATGGTTAAATGATCGTATTCTGATGGAACTTGTTCCTCG 331
Query 409 TTTGGATGCCCAAGAAATCAGAGGCTTGTTTGCTCCACCACCGTGGGGTGATGATGTCCC 468
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 332 TTTGGATGCCCAAGAAATCAGAGGCTTGTTTGCTCCACCACCATGGGGCGATGATGTCCC 391
Query 469 ACCCTCAGCATTTTCTTTGACTAATGTTGGAGAATGGGACAAATTTAGAAACATAGACAT 528
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 392 ACCCTCAGCCTTTTCTTTGACTAATGTTGGAGAATGGGACAAATTCAGAAACATAGATAT 451
Query 529 GGACAAGGAGGAATTGTGtttttttCAGGCCAACATCATGGATTCCTTGAATAGGTCATC 588
|||| || | | ||||||||||||||||||||||||| ||||||||
Sbjct 452 GGAC-------AA--G-G--------AGGCCAACATCATGGATTCCTTGAACAGGTCATC 493
Query 589 CGTAAGGCAGAAAGGTAGCGTGGACGGTGATAAAATCGCTGTCTTAAATGCTTGGAGAAG 648
|||||||||||||||| | ||||| | ||| |||| |||||||||||| |||||| | ||
Sbjct 494 CGTAAGGCAGAAAGGTCGTGTGGATGCTGACAAAACCGCTGTCTTAAACGCTTGGCGGAG 553
Query 649 AATAGATTGTAGGACAAGAGATGCTCTTCGACGTAGCTTTTTACCAGAACTAATCGAGGG 708
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 554 AATAGATTGTAGGACAAGAGAGGCTCTTCGACGTAGCTTTTTACCAGAACTAATCGAGGG 613
Query 709 ATATGAGAGCTGTATAAGTCACTTCATCGAGGAAGGTGGTGAAGGAGATGTTCTTGAGCT 768
|||||||| |||| ||||||| || ||||||||||||||||||||||||||||| || ||
Sbjct 614 ATATGAGAACTGTTTAAGTCAATTTATCGAGGAAGGTGGTGAAGGAGATGTTCTCGATCT 673
Query 769 CAAGGTTCAAGACCCATTCCATAGATTGCTTTTACACGGTGTTTGTGAGTATCACAATTT 828
||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 674 CAATGTTCAAGACCCATTCCATAGATTGCTTTTGCATGGTGTTTGTGAGTACCACAATTT 733
Query 829 GGTATCAACAACTGCAACAGAACAGATAGGAAGGATAGCAATGAAGACAACGAGCATCAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GGTATCAACAACTGCAACAGAACAGATAGGAAGGATAGCAATGAAGACAACGAGCATCAA 793
Query 889 ATGGAAGAAGAGTGGCGATTCAGGGGAGAAACCAAGCATCAGCCTAGCGCATTTCCTTAG 948
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 794 ATGGAAGAAGAGTGGCGATTCAGGGGAGAAACCAAGCATCAGCCTCGCGCATTTCCTTAG 853
Query 949 GATGTCAAAGGAAGGAGCTTGGTAACAACACATACACTCCTTTGTAGCTGTGGT--TTTT 1006
||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 854 GATGTCAAAGGAAGGAGCTTGGTAACATCACATACACTCCTTTGTAGCTGTG-TAATTTT 912
Query 1007 TATGAATATCA-GC-GC--CAATTTAAAGGGCTATTTATGCAGCAAAAAGATCTCAAGAc 1062
|||||||| | || || |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 913 TATGAATAAAAAGCAGCGTCAATTTAAAGGGATATTTATGCAGCAAAAATATCTCAAGAC 972
Query 1063 tctctctctctctctTTGGCCTTTGCTACTTCCCCCTATGTGGCCTCTTGTAAGCTTGTA 1122
||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 973 TCTCTCTCTCTCTCTCTGGCCTTTGCTACTTACCCCTATATGGCCTCTTGTAAGCTTGTA 1032
Query 1123 TTTGTATCCTCAATT-TATACGGTTTTATGATTAAAGAACGAGATA 1167
||||||||||||| | ||||||||||||| |||||||||||| |||
Sbjct 1033 TTTGTATCCTCAAATGTATACGGTTTTATTATTAAAGAACGAAATA 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44413198305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5