BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03260.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918991 jgi|Araly1|918991|scaffold_100272.1 1648 0.0
> Ahg918991 jgi|Araly1|918991|scaffold_100272.1
Length=973
Score = 1648 bits (892), Expect = 0.0
Identities = 946/973 (97%), Gaps = 0/973 (0%)
Strand=Plus/Plus
Query 234 TGGAGGGCCTAAGGGCGAGGCCGTGGCTTAAGCCAGGAGCTTGTATAAATGGAGATCAAT 293
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGAGGGCCTAAGGGCGAGGCCATGGCTTAAGCCAGGAGCTTGTATAAATGGAGATCAAT 60
Query 294 ATGACTACGACGGTTCGGAAGACGACCATTCCAGGCCTTGGTGGCGCCGTCGTCTCAGAT 353
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATGACTACGACGGTGCGGAAGACGACCATTCCAGGCCTTGGTGGCGTCGTCGTCTCAGAT 120
Query 354 CCTTGTATATGGCAGCCATGTCCTTTACTCCGTCCACTTTTCGAATCGCTATCTCGTTGC 413
||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 121 CCTTGTATATGGCGGCCATGTCCTTTACTCCGTCCACTTTCCGAATCGCAATCTCGTTGC 180
Query 414 TCCTTCTTGTTGCTATCGTCTCCGCCGTCATTTTTCTCCCGGTCGAACAGAAATTGAAGG 473
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCTTCTTGTTGCTATCGTCACCGCCGTCATTTTTCTCCCGGTCGAACAGAAATTGAAGG 240
Query 474 ACTTCTTGTTATGGATTAAGGAAGATCTTGGACCTTTTGGTCCACTTGCATTGGCTTTGG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTTCTTGTTATGGATTAAGGAAGATCTTGGACCTTTTGGTCCACTTGCATTGGCTTTGG 300
Query 534 CTTATATTCCTCTCACAATTGTGGCGGTTCCTGCTTCTGTACTCACGCTAGGTGGTGGTT 593
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 301 CTTATATTCCTCTCACAATTGTCGCAGTTCCTGCTTCTGTACTCACGCTAGGTGGTGGTT 360
Query 594 ACCTTTTTGGCCTGCCAGTAGGATTTGTAGCCGACTCTCTTGGAGCTACATTAGGTGCAA 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 ACCTTTTTGGCCTGCCAGTAGGATTTGTAGCCGACTCTCTTGGAGCTACATTAGGTGCGA 420
Query 654 CAGCGGCATTTCTGCTTGGTAGAACGATTGGTAAATCTTATGTCACTTCAAAAATAAAGC 713
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 CAGCGGCATTTCTGCTTGGTAGAACGATTGGTAAATCTTATGTCACCTCAAAAATAAAGC 480
Query 714 ATTACCCAAAGTTTCAAGCTGTTTCCGTTGCAATTCAAAAATCTGGCTTCAAGATAGTCT 773
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 ATTATCCAAAGTTTCAAGCTGTTTCCGTTGCAATTCAGAAATCTGGCTTCAAGATAGTCT 540
Query 774 TGCTGCTACGCGTTGTCCCCATACTGCCCTTCAATATGTTGAATTACCTCCTATCTGTAA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGCTGCTACGCGTTGTCCCCATACTGCCCTTCAATATGTTGAATTACCTCCTATCTGTAA 600
Query 834 CTCCTGTTCGCTTAGGGGAATACATGCTGGCCACTTGGTTGGGAATGATGCCCATTACAT 893
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 CCCCTGTTCGCTTAGGGGAATACATGCTGGCCACTTGGTTGGGAATGATGCCCATTACGT 660
Query 894 TTGCGCTAGTATATGTTGGAACTACTCTGAAAGATCTTTCTGATATTACACATGGATGGC 953
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCGCTAGTTTATGTTGGAACAACTCTGAAAGATCTTTCTGATATTACACATGGATGGC 720
Query 954 ATGAGGTGTCAGTATTTCGTTGGGTAATTATGATGGTTGGCGTAGCTCTAGCTGTAATTC 1013
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 ATGAGGTGTCAGCATTTCGTTGGGTAATTATGATGGTTGGCGTTGCTCTAGCTGTAATTC 780
Query 1014 TGATAATATGCATAACAAGAGTGGCGAAATCATCCTTGGACAAAGCATTGGCTGAGAATG 1073
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 781 TGATAATATGCATAACAAGAGTGGCTAAATCATCCTTGGACAAAGCATTGGCTGAGAATG 840
Query 1074 GTACTGAATTAGATGGGAAGAAGAATGACGACGCTTCCGTACTCCCGATCGCAGAGCCAC 1133
|| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 841 GTCCTGATTTAGATGGGAAGAAGAATGACGATGCTTCCGTGCTCCCGATCGCAGAGCCAC 900
Query 1134 CACCGGATCTACAAGAGCCTCTCGTTATCAGAATCGACCCATCCAATACTTGAATAATAT 1193
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 CACCGGATCTACACGAGCCTCTCGTTATCAGGATCGACCCATCCAATACTTGAATAATAT 960
Query 1194 AGACAAGAAGAAA 1206
|||| ||||||||
Sbjct 961 AGACCAGAAGAAA 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5