BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03270.1
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311427 jgi|Araly1|311427|fgenesh1_pm.C_scaffold_1000207 1650 0.0
> Ahg311427 jgi|Araly1|311427|fgenesh1_pm.C_scaffold_1000207
Length=1542
Score = 1650 bits (893), Expect = 0.0
Identities = 955/986 (97%), Gaps = 0/986 (0%)
Strand=Plus/Plus
Query 515 AGGTTCTTGATGCTGTAATTGGGCATAATGACACACTATTTAGGCGAGCTCAGCTTAAAG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 557 AGGTTCTTGATGCTGTAATTGGGCATAATGACACACTATTTAGGCGAGCTCAGCTCAAAG 616
Query 575 CCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGGGGGGTGAACTGACACACGAGGAAA 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 CCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGGGGGGTGAACTGACACACGAGGAAA 676
Query 635 CAATGATTATAAGCGGAGCTCTGGATTTGAGCCAGAAGACTGCTGAGGAGGCTATGACGC 694
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 677 CAATGATTATAAGTGGAGCCCTGGATTTGAGCCAGAAGACTGCTGAGGAAGCTATGACGC 736
Query 695 CAATTGAATCAACATTTTCGCTGGATGTAAATACAAAGTTAGACTGGGAAACAATTGGAA 754
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 737 CAATTGAATCAACATTTTCGCTGGATGTTAATACAAAGTTAGACTGGGAAACAATTGGAA 796
Query 755 AAATACTGTCACGGGGTCATAGCCGAATCCCGGTCTACTTAGGGAATCCGAAAAATATCA 814
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 797 AAATACTGTCACGAGGTCATAGCCGAATCCCAGTCTACTTAGGGAATTCGAAAAATATCA 856
Query 815 TTGGGCTTCTATTGGTTAAGAGTCTTCTAACTGTACGAGCAGAGACAGAGGCACCTGTAA 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TTGGGCTTCTATTGGTTAAGAGTCTTCTAACTGTACGAGCAGAGACAGAGGCACCTGTAA 916
Query 875 GCTCTGTTTCCATCAGGAAGATCCCAAGGGTTCCATCAGACATGCCATTGTATGATATCC 934
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 917 GTTCTGTTTCCATCAGAAAGATCCCAAGGGTTCCATCAGACATGCCATTGTACGATATCC 976
Query 935 TCAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTCAAAGTCAAAGACAAAG 994
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 977 TCAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTCAAAGTTAAAGACAGAG 1036
Query 995 ATAAAAAGAATAACATGCAGTTACTGAGTAATGGCGAAACACCCAAAGAAAATATGAAGT 1054
|||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1037 ATAAAATGAATAACATGCAGTTGCTGAGTAATGGCGAAACACCAAAAGAAAATATGAAGT 1096
Query 1055 TTTACCAGAGTAGTAATTTAACAGCTCCTTTGTTGAAGCATGAATCCCATGATGTAGTTG 1114
|||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1097 TTTATGAGAGTAGTAATTTAACGGCTCCTTTGTTGAAGCATGAATCCCATGATGTTGTTG 1156
Query 1115 TTGATATTGATAAAGTACCAAAGCATGTGAAAAATAGGGGAAGAAACTTCCAACAGAACG 1174
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1157 TTGATATTGATAAAGTACCAAAGCATGTGAAAAATAGGGGAAGAAATTTCCAACAGCACG 1216
Query 1175 GTACTGTGACGAGAGACTTACCGTGTTTGTTGGAAGATAACGAGGATGCAGAAGTGATTG 1234
|||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1217 GTACTGTGACAAGAGACTTACCGCGTTTGTTGGATGATAACGAGGATGCAGAAGTGATTG 1276
Query 1235 GCATCATCACCTTAGAGGATGTCTTTGAAGAACTTCTACAAGCAGAAATTGTGGATGAAA 1294
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1277 GCATCATCACGTTAGAGGATGTCTTTGAAGAACTTCTACAAGCAGAAATCGTGGATGAAA 1336
Query 1295 CTGATGTTTACATCGATGTACATAAAAGGGTACGTGTGGCGGCGGCTGCAGCAGCAGCTG 1354
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1337 CTGATGTTTACATCGATGTACATAAAAGGGTACGTGTGGCGGCAGCTGCAGCAGCAGCTG 1396
Query 1355 TATCATCTATAACACGTGCTTCACCAGCGGAGATTCAAAGCAAGGTAGGACAAACGGTGA 1414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1397 TATCATCCATAACACGTGCTTCACCAGCGGAGATTCAAAGCAAGGTAGGACAAACTGTGA 1456
Query 1415 AGAAGCTAGTTGGGAAAGAAGCACGAGGTACAAAGAATTACACAACAAAAATCACAGAGC 1474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 AGAAGCTTGTTGGGAAAGAAGCACGAGGTACAAAGAATTACACAACAAAAATCACAGAGC 1516
Query 1475 CTCTTTTAGCAGAATCAGATAGATAG 1500
||||||||||||||||||||||||||
Sbjct 1517 CTCTTTTAGCAGAATCAGATAGATAG 1542
Score = 869 bits (470), Expect = 0.0
Identities = 503/519 (97%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGTTCTGAGCACTTTGGCGTTGGTAAGAGCCGCTTACTCGCTCAACAGTTTCGTC 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTGTTATGAGCACTTTGGCGTTGGTAAGAGCCGCTTACTCGCTCAACAGTTTCGTC 60
Query 61 TTTGAAGCCGAGGACATCCGATTCGGTTCTCCGTGGTGGTTCGTCGTCGTCGGTGTCGCG 120
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TTTGAAGCCGAAGACATCCGATTCGGTTCTCCGTGGTGGTTCGTTGTCGTCGGTGTGGCG 120
Query 121 TGTTTCCTCGTACTCTTCGCCGGAATAATGTCGGGTCTCACACTCGGACTAATGTCCCTT 180
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 121 TGTTTCCTCGTACTCTTCGCCGGAATAATGTCGGGACTCACGCTCGGACTGATGTCCCTT 180
Query 181 GGTCTCGTTGAGCTCGAGATTCTCCAACAGAGTGGTTCCTCCGCCGAGAAAAAACAGGCC 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTCTCGTTGAGCTAGAGATTCTCCAACAGAGTGGTTCCTCCGCCGAGAAAAAACAGGCC 240
Query 241 GCTGCAATCTTACCAGTGGTAAAGAAGCAGCATCAACTTCTTGTGACTCTACTTCTTTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGCAATCTTACCAGTGGTAAAGAAGCAGCATCAACTTCTTGTGACTCTACTTCTTTGC 300
Query 301 AATGCAGCTGCTATGGAGGCTCTTCCTATATGCCTGGATAAGATATTCCATCCTTTTGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATGCAGCTGCTATGGAGGCTCTTCCTATATGCCTGGATAAGATATTCCATCCTTTTGTG 360
Query 361 GCTGTTTTACTCTCAGTTACTTTTGTTCTTGCTTTTGGAGAGATAATTCCGCAAGCTATA 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GCTGTTTTACTCTCAGTTACTTTTGTTCTTGCTTTTGGAGAGATCATTCCGCAAGCTATA 420
Query 421 TGCTCTAGATATGGACTTGCTGTTGGCGCAAACTTTTTGTGG-TTGGTTCGCATTTTGAT 479
||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 421 TGCTCGAGATACGGACTTGCTGTTGGCGCAAACTTTTTGTGGCTTG-TTCGCATTTTGAT 479
Query 480 GATAATCTGCTATCCGATTGCTTACCCTATCGGAAAGGT 518
|||| |||||||||| |||||||||||||| ||||||||
Sbjct 480 GATACTCTGCTATCCCATTGCTTACCCTATTGGAAAGGT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56145021130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5