BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G03270.1 Length=1500 Score E Sequences producing significant alignments: (Bits) Value Ahg311427 jgi|Araly1|311427|fgenesh1_pm.C_scaffold_1000207 1650 0.0 > Ahg311427 jgi|Araly1|311427|fgenesh1_pm.C_scaffold_1000207 Length=1542 Score = 1650 bits (893), Expect = 0.0 Identities = 955/986 (97%), Gaps = 0/986 (0%) Strand=Plus/Plus Query 515 AGGTTCTTGATGCTGTAATTGGGCATAATGACACACTATTTAGGCGAGCTCAGCTTAAAG 574 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 557 AGGTTCTTGATGCTGTAATTGGGCATAATGACACACTATTTAGGCGAGCTCAGCTCAAAG 616 Query 575 CCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGGGGGGTGAACTGACACACGAGGAAA 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 617 CCCTTGTCTCAATTCACAGCCAGGAGGCTGGTAAGGGGGGTGAACTGACACACGAGGAAA 676 Query 635 CAATGATTATAAGCGGAGCTCTGGATTTGAGCCAGAAGACTGCTGAGGAGGCTATGACGC 694 ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 677 CAATGATTATAAGTGGAGCCCTGGATTTGAGCCAGAAGACTGCTGAGGAAGCTATGACGC 736 Query 695 CAATTGAATCAACATTTTCGCTGGATGTAAATACAAAGTTAGACTGGGAAACAATTGGAA 754 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 737 CAATTGAATCAACATTTTCGCTGGATGTTAATACAAAGTTAGACTGGGAAACAATTGGAA 796 Query 755 AAATACTGTCACGGGGTCATAGCCGAATCCCGGTCTACTTAGGGAATCCGAAAAATATCA 814 ||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 797 AAATACTGTCACGAGGTCATAGCCGAATCCCAGTCTACTTAGGGAATTCGAAAAATATCA 856 Query 815 TTGGGCTTCTATTGGTTAAGAGTCTTCTAACTGTACGAGCAGAGACAGAGGCACCTGTAA 874 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 857 TTGGGCTTCTATTGGTTAAGAGTCTTCTAACTGTACGAGCAGAGACAGAGGCACCTGTAA 916 Query 875 GCTCTGTTTCCATCAGGAAGATCCCAAGGGTTCCATCAGACATGCCATTGTATGATATCC 934 | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 917 GTTCTGTTTCCATCAGAAAGATCCCAAGGGTTCCATCAGACATGCCATTGTACGATATCC 976 Query 935 TCAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTCAAAGTCAAAGACAAAG 994 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 977 TCAATGAGTTTCAAAAGGGAAGCAGTCACATGGCTGCAGTTGTCAAAGTTAAAGACAGAG 1036 Query 995 ATAAAAAGAATAACATGCAGTTACTGAGTAATGGCGAAACACCCAAAGAAAATATGAAGT 1054 |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1037 ATAAAATGAATAACATGCAGTTGCTGAGTAATGGCGAAACACCAAAAGAAAATATGAAGT 1096 Query 1055 TTTACCAGAGTAGTAATTTAACAGCTCCTTTGTTGAAGCATGAATCCCATGATGTAGTTG 1114 |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1097 TTTATGAGAGTAGTAATTTAACGGCTCCTTTGTTGAAGCATGAATCCCATGATGTTGTTG 1156 Query 1115 TTGATATTGATAAAGTACCAAAGCATGTGAAAAATAGGGGAAGAAACTTCCAACAGAACG 1174 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1157 TTGATATTGATAAAGTACCAAAGCATGTGAAAAATAGGGGAAGAAATTTCCAACAGCACG 1216 Query 1175 GTACTGTGACGAGAGACTTACCGTGTTTGTTGGAAGATAACGAGGATGCAGAAGTGATTG 1234 |||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1217 GTACTGTGACAAGAGACTTACCGCGTTTGTTGGATGATAACGAGGATGCAGAAGTGATTG 1276 Query 1235 GCATCATCACCTTAGAGGATGTCTTTGAAGAACTTCTACAAGCAGAAATTGTGGATGAAA 1294 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1277 GCATCATCACGTTAGAGGATGTCTTTGAAGAACTTCTACAAGCAGAAATCGTGGATGAAA 1336 Query 1295 CTGATGTTTACATCGATGTACATAAAAGGGTACGTGTGGCGGCGGCTGCAGCAGCAGCTG 1354 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1337 CTGATGTTTACATCGATGTACATAAAAGGGTACGTGTGGCGGCAGCTGCAGCAGCAGCTG 1396 Query 1355 TATCATCTATAACACGTGCTTCACCAGCGGAGATTCAAAGCAAGGTAGGACAAACGGTGA 1414 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1397 TATCATCCATAACACGTGCTTCACCAGCGGAGATTCAAAGCAAGGTAGGACAAACTGTGA 1456 Query 1415 AGAAGCTAGTTGGGAAAGAAGCACGAGGTACAAAGAATTACACAACAAAAATCACAGAGC 1474 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 AGAAGCTTGTTGGGAAAGAAGCACGAGGTACAAAGAATTACACAACAAAAATCACAGAGC 1516 Query 1475 CTCTTTTAGCAGAATCAGATAGATAG 1500 |||||||||||||||||||||||||| Sbjct 1517 CTCTTTTAGCAGAATCAGATAGATAG 1542 Score = 869 bits (470), Expect = 0.0 Identities = 503/519 (97%), Gaps = 2/519 (0%) Strand=Plus/Plus Query 1 ATGGTTGTTCTGAGCACTTTGGCGTTGGTAAGAGCCGCTTACTCGCTCAACAGTTTCGTC 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTTGTTATGAGCACTTTGGCGTTGGTAAGAGCCGCTTACTCGCTCAACAGTTTCGTC 60 Query 61 TTTGAAGCCGAGGACATCCGATTCGGTTCTCCGTGGTGGTTCGTCGTCGTCGGTGTCGCG 120 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 61 TTTGAAGCCGAAGACATCCGATTCGGTTCTCCGTGGTGGTTCGTTGTCGTCGGTGTGGCG 120 Query 121 TGTTTCCTCGTACTCTTCGCCGGAATAATGTCGGGTCTCACACTCGGACTAATGTCCCTT 180 ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| Sbjct 121 TGTTTCCTCGTACTCTTCGCCGGAATAATGTCGGGACTCACGCTCGGACTGATGTCCCTT 180 Query 181 GGTCTCGTTGAGCTCGAGATTCTCCAACAGAGTGGTTCCTCCGCCGAGAAAAAACAGGCC 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTCTCGTTGAGCTAGAGATTCTCCAACAGAGTGGTTCCTCCGCCGAGAAAAAACAGGCC 240 Query 241 GCTGCAATCTTACCAGTGGTAAAGAAGCAGCATCAACTTCTTGTGACTCTACTTCTTTGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCTGCAATCTTACCAGTGGTAAAGAAGCAGCATCAACTTCTTGTGACTCTACTTCTTTGC 300 Query 301 AATGCAGCTGCTATGGAGGCTCTTCCTATATGCCTGGATAAGATATTCCATCCTTTTGTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AATGCAGCTGCTATGGAGGCTCTTCCTATATGCCTGGATAAGATATTCCATCCTTTTGTG 360 Query 361 GCTGTTTTACTCTCAGTTACTTTTGTTCTTGCTTTTGGAGAGATAATTCCGCAAGCTATA 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 361 GCTGTTTTACTCTCAGTTACTTTTGTTCTTGCTTTTGGAGAGATCATTCCGCAAGCTATA 420 Query 421 TGCTCTAGATATGGACTTGCTGTTGGCGCAAACTTTTTGTGG-TTGGTTCGCATTTTGAT 479 ||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 421 TGCTCGAGATACGGACTTGCTGTTGGCGCAAACTTTTTGTGGCTTG-TTCGCATTTTGAT 479 Query 480 GATAATCTGCTATCCGATTGCTTACCCTATCGGAAAGGT 518 |||| |||||||||| |||||||||||||| |||||||| Sbjct 480 GATACTCTGCTATCCCATTGCTTACCCTATTGGAAAGGT 518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56145021130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5