BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G03280.1
Length=1901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918994 jgi|Araly1|918994|scaffold_100275.1 2414 0.0
Ahg354720 jgi|Araly1|354720|fgenesh1_pg.C_scaffold_7001893 1151 0.0
Ahg946115 jgi|Araly1|946115|scaffold_702344.1 375 5e-103
> Ahg918994 jgi|Araly1|918994|scaffold_100275.1
Length=1488
Score = 2414 bits (1307), Expect = 0.0
Identities = 1429/1489 (96%), Gaps = 4/1489 (0%)
Strand=Plus/Plus
Query 129 TGTAAGTATTTGGGTTGTTAACTCCATGGAAAAATCAGGCCCGGTGCAGAAAGCCGTTGT 188
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 TGTAAGTATTTGGGTTGTTAAGTCCATGGAAAAATCAGGCCCTGTGCAGAAAGCCGTTGT 60
Query 189 TCTCCAGCCATTTGTCAAGTTGGTGAGGCTTGTAGCGAGGGCTTTCTATGATGATTATAC 248
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GCTCCAGCCATTTGTCAAGCTGGTGAGGCTTGTCGCGAGGGCTTTCTATGATGATTATAC 120
Query 249 TACGAAAAGCGATAATCAGCAGAAATCTGCTAGAAGTGACAACAGAGGGATTGCCGCTGT 308
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TACGAAAAGCGATCATCAGCAGAAATCTGCAAGAAGTGACAACAGAGGGATTGCCGCTGT 180
Query 309 GGTGCTAGACGCGCTGGCAAGGCGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGATTT 368
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 GGTGCTAGACGCCCTGGCGAGGCGGCAATGGGTTAGAGAAGAAGATTTGGCAAAAGATTT 240
Query 369 GCAGTTGCACGCCAAGCAACTTCGAAAAATAATAAGACTCTTTGAAGAAGAAAAGTTGAT 428
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCAATTGCACGCCAAGCAACTTCGAAAAATAATAAGACTCTTTGAAGAAGAAAAGTTGAT 300
Query 429 TATGCGTGACCACCGGAAAGAGACTGCAAAGGGTGCAAAGATGTATAGTGCTGCAGTGGC 488
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 TATGCGTGACCACCGGAAAGAGACTGCAAAGGGGGCAAAGATGTATAGTGCTGCAGTGGC 360
Query 489 TGCTACAACTGATGGCCGAGCAGAGGACAAAGTTAAGCTTCACACCCACTCGTATTGCTG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TGCTACAACTGATGGCCGAGCAGAGGACAAAGTTAAGCTTCACACCCACTCGTATTGTTG 420
Query 549 TCTCGATTATGCACAGATATGTGACGTTGTTCGTTTTAGACTGCATCGGATGaaaaaaaG 608
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCGATTATGCACAGATATGTGATGTTGTTCGTTTTAGACTGCATCGGATGAAAAAAAG 480
Query 609 GCTCAAAGATGAGCTAGAAGATAAGAATACTGTTCAGGAGTATGGCTGTCCTAACTGCCA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTCAAAGATGAGCTAGAAGATAAGAATACTGTTCAGGAGTATGGCTGTCCTAACTGCCA 540
Query 669 AAGGAAATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGTAGACGATTCTTTTCA 728
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 AAGAAAATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGAAGACGATTCTTTTCA 600
Query 729 TTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGCAACAAGCTAACTTCCGAAGAAGT 788
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 601 TTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGTAACAAGCTAACTTCCGAAGAAGT 660
Query 789 AGTTGATGGAGATGATAATGCAAGGAGACGGCGGCGGGAAAACCTAAAAAATATGCTTCA 848
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 661 TGTTGATGGAGATGATAATGCAAGGAGACGGCGGCGGGAAAAACTAAAAAATATGCTTCA 720
Query 849 GAAATTGGAGGTTCAAATGAAACCTCTGATGGATCAGTTAAATAGAGTAAAAGACCTACC 908
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGTTGGAGGTTCAAATGAAACCTCTGATGGATCAGTTAAATAGAGTAAAAGACCTACC 780
Query 909 AATACCTGAATTTGGATCTTTTCTGGCATGGGAGGCCCGTGCAGCGATGGCTGCTCGCGA 968
||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 781 AATTCCTGAATTTGGATCTTTTCTGGCATGGGAGGCTCGTGCAGCTATGGCTGCTCGCGC 840
Query 969 GAATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGGGCGGGTATGGTTCAACACC 1028
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 841 GAATGGTGATCTTAACCCTAATGATCCTTTGAGGTCACAGAGTGGGTATGGTTCAACACC 900
Query 1029 AATGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTAGGTGATGGAAACGAAGATGT 1088
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 901 AATGCCATTTCTCGGAGAGACAAAGGTTGAGGTTAACCTTGGCGATGGAAACGAAGATGT 960
Query 1089 TAAATCTAAAGGTGGAGACTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGG 1148
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TAAATCTAAAGGTGGAGATTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGG 1020
Query 1149 AATGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGGTGG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AATGAATCTGACCGAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGGTGG 1080
Query 1209 GGCAGGAGCAGCAGCAAAACTTTCAGATGACAAGAAATCAGCCATTGGAAATGGAGATGA 1268
|| ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1081 CTCAAGAGGAGCAGCAAAACTTTCAGAAGACAAGAAATCAGCCAGTGGAAATGGAGATGA 1140
Query 1269 GAAGGATTTGAAGGATGAGTATCTCAAAGCTTACTACGCCGAACTTATGAAGCAGCAAGA 1328
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1141 GAAGGATTTGAAGGATGAGTATCTCAAAGCTTACTACTTAGAACTTCTGAAGCAGCAAGA 1200
Query 1329 GCTTGCTGCAAGGCGAAATCAACAAGAATCCGCTGGTGAACCAACTTCTGGCATTCAGTC 1388
|||||||||||| ||||||||||||||||||||||| ||| || |||||| ||| ||||
Sbjct 1201 GCTTGCTGCAAGACGAAATCAACAAGAATCCGCTGGCGAATCAGCTTCTGACATCCAGTT 1260
Query 1389 GGGTACTGTATACTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGTgaaga-g--gatga 1445
||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1261 GGGTACTACATCCTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGTGAAGAAGAAGATGA 1320
Query 1446 agacgaagatgaagaagaagtagaatgggaagaaaagGCTCCTGTTACTGCTAATGGAAA 1505
|||||||||||||||||| || |||||||||||||||||||||||| | |||||||||||
Sbjct 1321 AGACGAAGATGAAGAAGATGTTGAATGGGAAGAAAAGGCTCCTGTTGCAGCTAATGGAAA 1380
Query 1506 CTATAAGGTGGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAGAAGAAGAGGA 1565
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CTACAAGGTGGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAGAAGAAGAGGA 1440
Query 1566 AGACGACGTCGATTGGGAAGAAGGCTGAAAAACAAATGGATCAACCATT 1614
||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1441 AGACGACATCGATTGGGAAGAAGGCTGAAAG-CAAATGGATCAACCATT 1488
> Ahg354720 jgi|Araly1|354720|fgenesh1_pg.C_scaffold_7001893
Length=1452
Score = 1151 bits (623), Expect = 0.0
Identities = 921/1064 (87%), Gaps = 24/1064 (2%)
Strand=Plus/Plus
Query 154 ATGGAAAAATCAGGC-C--CGGTGCAGAAAGCCGTTGTTCTCCAGCCATTTGTCAAGTTG 210
|||||||||||| | | |||||||||| ||||||| ||| |||| ||| ||||| ||
Sbjct 1 ATGGAAAAATCAATCACGGTGGTGCAGAAAACCGTTGTGCTCGAGCCGTTTATCAAGCTG 60
Query 211 GTGAGGCTTGTAGCGAGGGCTTTCTATGATGATTATACTACGAAAAGCGATAATCAGCAG 270
|||| |||| ||| ||| ||||||||| |||||||| || |||||||||||||||||
Sbjct 61 GTGAAGCTTTTAGTAAGGATTTTCTATGACAATTATACTCCGGAAAGCGATAATCAGCAG 120
Query 271 AAATCTGCTAGAAGTGACAACAGAGGGATTGCCGCTGTGGTGCTAGACGCGCTGGCAAGG 330
|||||||| | || || |||||||| ||| | | | ||||| |||||||| || |||
Sbjct 121 AAATCTGCAAAAAATG---TCAGAGGGACTGCTGTTATCGTGCTGGACGCGCTTGCGAGG 177
Query 331 CGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGATTTGCAGTTGCACGCCAAGCAACTT 390
||||||||||||||||||||||||||||||||||| ||| || | | |||||| |||||
Sbjct 178 CGGCAATGGGTTAGAGAAGAAGACTTGGCAAAAGAGTTGAAGCGGAATGCCAAGGAACTT 237
Query 391 CGAAAAATAATAAGAC-TCTTTGAAGAA-GAAAAGTTGATTATGCGTGACCACCGGAAAG 448
|||||| ||||||||| | ||||||||| |||| ||| | |||||| ||||| ||||||
Sbjct 238 CGAAAATTAATAAGACAT-TTTGAAGAACAAAAATTTG-TCATGCGTTACCACAGGAAAG 295
Query 449 AGACTGCAAAGGGTGCAAAGATGTATAGTGCTGCAGTGGCTGCTACAACTGATGGCCGAG 508
||||||||||| |||| |||||||||||| |||||||| || |||||||||||||||||
Sbjct 296 AGACTGCAAAGCGTGCGAAGATGTATAGTTATGCAGTGGGTGGTACAACTGATGGCCGAG 355
Query 509 CAGAGGACAAAGTTAAGCTT-CACACCCACTCGTATTGCTGTCTCGATTATGCACAGATA 567
|||||||||| |||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 356 CAGAGGACAATGTTAAG-TTCCACACGCACTCGTATTGCTGTCTTGATTATGCACAGATA 414
Query 568 TGTGACGTTGTTCGTTTTAGACTGCATCGGATGaaaaaaaGGCTCAAAGATGAGCTAGAA 627
| ||| ||||||||| || |||||| ||| | ||||||| |||||||||| ||||||
Sbjct 415 TATGATATTGTTCGTTATAAACTGCACCGGCTCAAAAAAAAATTCAAAGATGAACTAGAA 474
Query 628 GATAAG-AATACTGTTCAGGAGTATGGCTGTCCTAACTGCCAAAGGAAA-TATAATGCGC 685
||| | |||||||||||||||||||||||||||||||| |||| |||| |||||||| |
Sbjct 475 GAT-CGAAATACTGTTCAGGAGTATGGCTGTCCTAACTG-CAAAAGAAAGTATAATGCAC 532
Query 686 TGGATGCTCTGAGATTAATTTCTATGGTAGACGATTCTTTTCATTGTGAAAATTGCAATG 745
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 533 TGGATGCCCTGAGATTAATTTCTATGGAAGACGATTCTTTTCATTGTGAAAATTGCAATG 592
Query 746 GTGAACTTGTTGTGGAATGCAACAAGCTAACTTCCGAAGAAGTAGTTGATGGAGATGATA 805
||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||| ||| |
Sbjct 593 GTGAACTTGTTATGGAATGTAACAAACTAACTTCCGAAGAAGTAGTAGATGGAGGTGACA 652
Query 806 ATGCAAGGAGACGGCGGCGGGA-AAACCTAAAAAATAT-GCTTCAGAAATTGGAGGTTCA 863
||||||||||||||| |||||| ||| | |||| | | ||||||| | ||||||||| |
Sbjct 653 ATGCAAGGAGACGGCAGCGGGAGAAA-GT-AAAAGTTTGGCTTCAGGATTTGGAGGTTGA 710
Query 864 AATGAAACCTCTGATGGATC-AGTTAAATAGAGTAAAAGACCTACCAATACCTGAATTTG 922
| |||||||||||||||| | | ||||||||||||||||||||||| | |||| ||||
Sbjct 711 ACTGAAACCTCTGATGGAACTA-ATAAATAGAGTAAAAGACCTACCATTCCCTGCCTTTG 769
Query 923 GATCTTTTCTGGCATGGGAGGCCCGTGCAGCGATGGCTGCTCGCGAGAATGGTGATCTTA 982
| |||||| ||||||||| | ||||| || | ||||||||| || |||||||||||||
Sbjct 770 AACCTTTTCCGGCATGGGAAGTTCGTGCTGCTAAGGCTGCTCGTGAAAATGGTGATCTTA 829
Query 983 ACCCT-AATGATCCTTTGAGGTCACAGGGCGGGTATGGTTCAACACCAATGCCATTTCTC 1041
| | | |||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 830 A-CTTAAATGATCCTTCAAGGTCACTGGGCGGGTATGGTTCAACACCAATGCCATTTCTG 888
Query 1042 GGAGAGACAAAGGTTGAGGTTAACCTAGGTGATGGAAACGAAGATGTTAAATCTAAAGGT 1101
|||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||
Sbjct 889 GGAGAGACAAAGGTTGAGGTTAACCTTGGTGAAGGAAAAGAAGATGTCAAATCGAAAGGT 948
Query 1102 GGAGACTCCAGTCTGAAAGTCTTGCCTCCATGGATGATCAAGGAAGGAATGAATCTGACC 1161
||||| || ||||||||| | ||||||||||||||||||||| |||| ||||||||||||
Sbjct 949 GGAGATTCTAGTCTGAAAATGTTGCCTCCATGGATGATCAAGCAAGGCATGAATCTGACC 1008
Query 1162 GAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAAGGTTGATGG 1205
||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1009 GAGGAACAAAGAGGAGAGATGAGACAGGAAGCAAATGCTGATGG 1052
Score = 233 bits (126), Expect = 3e-60
Identities = 258/319 (81%), Gaps = 20/319 (6%)
Strand=Plus/Plus
Query 1282 GATGAGTATCTCAAAGCTTACTACGCCGAACT-TA-TGAAGCAGCAAGAGCTTGCTGCAA 1339
|||||||||||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct 1147 GATGAGTATCTCAAAGCTTACTACGCCG--CTATACTGGAGCAGCAAAAGCTTGCTGCAA 1204
Query 1340 GGC-GAAATCAACAAGAATCCGCTGGTGAA-C--CAACTTCTGGCATTCAGTCGGGTACT 1395
| ||| ||| ||||||||||| || ||| | |||| ||| |||| | |||| ||||
Sbjct 1205 AACTGAA-TCAGCAAGAATCCGCAGGCGAATCAACAACCACTGACATTGAATCGGCTACT 1263
Query 1396 GTATACTCAGGTCGTCAGGTTAGTATGAAGGCCAAACGTgaagaggatgaagacgaagat 1455
|| ||||| |||||||||| |||||||| ||||||| |||||||| | || | ||
Sbjct 1264 ACATCCTCAGATCGTCAGGTTGGTATGAAGTCCAAACGCGAAGAGGA--A-GA--A-GA- 1316
Query 1456 gaagaagaagtagaatgggaagaa-aagGCTCCTGTTACTGCTAATGGAAACTATAAGGT 1514
| ||||| || |||||||||||| ||| || |||| || || ||||||||||| |||||
Sbjct 1317 -A-GAAGATGTTGAATGGGAAGAACAAG-CTTCTGTGACAGCAAATGGAAACTACAAGGT 1373
Query 1515 GGACTTGAATGTGGAAGCAGAAGCTTCGGGTGGTGAAGAAGAAGAAGAGGAAGACGACGT 1574
||| ||||||||||||||||||| | | | ||||||||||||| || || ||| |
Sbjct 1374 GGATTTGAATGTGGAAGCAGAAGAGGCAGAAGAAAAAGAAGAAGAAGATGACGATGACAT 1433
Query 1575 CGATTGGGAAGAAGGCTGA 1593
|||||||||||||||||||
Sbjct 1434 CGATTGGGAAGAAGGCTGA 1452
> Ahg946115 jgi|Araly1|946115|scaffold_702344.1
Length=865
Score = 375 bits (203), Expect = 5e-103
Identities = 342/407 (84%), Gaps = 18/407 (4%)
Strand=Plus/Plus
Query 596 GGATGaa-aaaaaGGCTCAAAGATGAGCTAGAAGATAAGAATACTGTTCAGGAGTATGG- 653
||||||| ||||| | ||||| | || |||||||||||| ||| |||||| ||||||||
Sbjct 20 GGATGAAGAAAAA-GTTCAAACACGAACTAGAAGATAAGGATAATGTTCAAGAGTATGGA 78
Query 654 CTGTCCTAACTGCCAAAGGAAATATAATGCGCTGGATGCTCTGAGATTAATTTCTATGGT 713
| ||||||||||| |||| ||||||| ||| |||||||||||||||||| |||||||||
Sbjct 79 C-GTCCTAACTGCAAAAGAAAATATAGTGCACTGGATGCTCTGAGATTATTTTCTATGGA 137
Query 714 AGACGATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTGTGGAATGCAACAAGCT 773
|| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 138 AGGCGATTCTTTTCATTGTGAAAATTGCAATGGTGAACTTGTTATGGAATGTAACAAGCT 197
Query 774 AACTTCCGAAGAAGTAGT--T-GATGGA-GATGATAATGCAAGGAGACGGCGGCGGGAAA 829
||||||| |||||||| | | |||||| | ||| |||||||||||||||||| | |
Sbjct 198 AACTTCCCAAGAAGTACTAGTAGATGGAAG-TGACAATGCAAGGAGACGGCGG-G--ATC 253
Query 830 ACCTAAAAAATATGCTTCAGAA-ATTGGAGGTTCAAATGAAACCTCTGATGGATCAGT-T 887
| |||||| || ||||||||| || ||| |||| | ||||||||||||||||||| | |
Sbjct 254 ATCTAAAAGATTTGCTTCAGATTAT-GGAAGTTCGACTGAAACCTCTGATGGATCA-TAT 311
Query 888 AAATAGAGTAAAAGACCTACCAATACCT-GAATTTGGATCTTTTCTGGCATGGGAGGCCC 946
||| ||| ||||||||||||| | ||| | |||| |||||||| |||||||||||| |
Sbjct 312 AAACAGAATAAAAGACCTACCGGTTCCTAGC-TTTGAATCTTTTCCGGCATGGGAGGCTC 370
Query 947 GTGCAGCGATGGCTGCTCGCGAGAATGGTGATCTTAACCCTAATGAT 993
||||||| | | |||||| || |||||||||| ||| || |||||
Sbjct 371 GTGCAGCTACGTATGCTCGTGAAAATGGTGATCGTAATTCTGATGAT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71419209375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5